mRNA_F-distichus_contig10503.441.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10503.441.1
Unique NamemRNA_F-distichus_contig10503.441.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10503.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10503contigF-distichus_contig10503:8918..9086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size158
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.965029-CDS-F-distichus_contig10503:8917..89931622928970.965029-CDS-F-distichus_contig10503:8917..8993Fucus distichus monoicousCDSF-distichus_contig10503 8918..8993 +
1690885086.6788087-CDS-F-distichus_contig10503:8917..89931690885086.6788087-CDS-F-distichus_contig10503:8917..8993Fucus distichus monoicousCDSF-distichus_contig10503 8918..8993 +
1622928970.9787543-CDS-F-distichus_contig10503:9006..90861622928970.9787543-CDS-F-distichus_contig10503:9006..9086Fucus distichus monoicousCDSF-distichus_contig10503 9007..9086 +
1690885086.6976693-CDS-F-distichus_contig10503:9006..90861690885086.6976693-CDS-F-distichus_contig10503:9006..9086Fucus distichus monoicousCDSF-distichus_contig10503 9007..9086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10503.441.1prot_F-distichus_contig10503.441.1Fucus distichus monoicouspolypeptideF-distichus_contig10503 8918..9086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10503.441.1

>prot_F-distichus_contig10503.441.1 ID=prot_F-distichus_contig10503.441.1|Name=mRNA_F-distichus_contig10503.441.1|organism=Fucus distichus monoicous|type=polypeptide|length=52bp
LGTVLQVLGSILRIPSGCPSVVHPVSPAATPPHQSHIYASSLLLTVMRHT
LG
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mRNA from alignment at F-distichus_contig10503:8918..9086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10503.441.1 ID=mRNA_F-distichus_contig10503.441.1|Name=mRNA_F-distichus_contig10503.441.1|organism=Fucus distichus monoicous|type=mRNA|length=169bp|location=Sequence derived from alignment at F-distichus_contig10503:8918..9086+ (Fucus distichus monoicous)
TTGGGCACTGTGTTGCAGGTGCTAGGATCCATCCTTCGCATCCCAAGCGG
CTGCCCAAGTGTTGTCCACCCCGTAAGTTATTCGTCCACGTCCCGCAGCC
ACACCTCCCCACCAATCTCACATCTACGCGAGTAGTTTGTTGTTGACCGT
CATGCGCCACACATTGGGC
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Coding sequence (CDS) from alignment at F-distichus_contig10503:8918..9086+

>mRNA_F-distichus_contig10503.441.1 ID=mRNA_F-distichus_contig10503.441.1|Name=mRNA_F-distichus_contig10503.441.1|organism=Fucus distichus monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at F-distichus_contig10503:8918..9086+ (Fucus distichus monoicous)
TTGGGCACTGTGTTGCAGGTGCTAGGATCCATCCTTCGCATCCCAAGCGG
CTGCCCAAGTGTTGTCCACCCCGTAATTGGGCACTGTGTTGCAGGTGCTA
GGATCCATCCTTCGCATCCCAAGCGGCTGCCCAAGTGTTGTCCACCCCGT
AAGTCCCGCAGCCACACCTCCCCACCAATCTCACATCTACGCGAGTAGTT
TGTTGTTGACCGTCATGCGCCACACATTGGGCGTCCCGCAGCCACACCTC
CCCACCAATCTCACATCTACGCGAGTAGTTTGTTGTTGACCGTCATGCGC
CACACATTGGGC
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