mRNA_F-distichus_contig10503.437.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10503.437.1
Unique NamemRNA_F-distichus_contig10503.437.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10503.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10503contigF-distichus_contig10503:2468..3488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10503.437.1prot_F-distichus_contig10503.437.1Fucus distichus monoicouspolypeptideF-distichus_contig10503 2611..3488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.806796-UTR-F-distichus_contig10503:2467..26101622928970.806796-UTR-F-distichus_contig10503:2467..2610Fucus distichus monoicousUTRF-distichus_contig10503 2468..2610 -
1690885086.6093988-UTR-F-distichus_contig10503:2467..26101690885086.6093988-UTR-F-distichus_contig10503:2467..2610Fucus distichus monoicousUTRF-distichus_contig10503 2468..2610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.8209405-CDS-F-distichus_contig10503:2610..27001622928970.8209405-CDS-F-distichus_contig10503:2610..2700Fucus distichus monoicousCDSF-distichus_contig10503 2611..2700 -
1690885086.6198432-CDS-F-distichus_contig10503:2610..27001690885086.6198432-CDS-F-distichus_contig10503:2610..2700Fucus distichus monoicousCDSF-distichus_contig10503 2611..2700 -
1622928970.833248-CDS-F-distichus_contig10503:3359..34881622928970.833248-CDS-F-distichus_contig10503:3359..3488Fucus distichus monoicousCDSF-distichus_contig10503 3360..3488 -
1690885086.6409647-CDS-F-distichus_contig10503:3359..34881690885086.6409647-CDS-F-distichus_contig10503:3359..3488Fucus distichus monoicousCDSF-distichus_contig10503 3360..3488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10503.437.1

>prot_F-distichus_contig10503.437.1 ID=prot_F-distichus_contig10503.437.1|Name=mRNA_F-distichus_contig10503.437.1|organism=Fucus distichus monoicous|type=polypeptide|length=73bp
QEQVECRSHEVVRAWLSRCSPPASLPACAIIRATFWRNLEKSNVSAPSCV
SCGRSQSLVVGPLVLSYPCMAF*
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mRNA from alignment at F-distichus_contig10503:2468..3488-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10503.437.1 ID=mRNA_F-distichus_contig10503.437.1|Name=mRNA_F-distichus_contig10503.437.1|organism=Fucus distichus monoicous|type=mRNA|length=1021bp|location=Sequence derived from alignment at F-distichus_contig10503:2468..3488- (Fucus distichus monoicous)
CAGGAGCAGGTTGAGTGTCGGTCGCATGAAGTGGTTCGAGCTTGGTTGAG
CCGGTGCTCCCCACCTGCCAGCCTGCCTGCCTGTGCGATCATCCGGGCGA
CGTTCTGGCGAAATCTGGAGAAATCAAATGTGTGTCATGTATACAACCCC
AATTGAGTAATGAACTTTAAGACCATATTAATTGTGTACTGGTATCTGAT
GTGCTGCTGCGTAGACTCTCTGATCGTGAGGAACGTTAAAAAAATAAAAA
AAGAGTTTTGTATTCGCGCGCCATGCCATGCCATGCGATGCGCTGCCAAG
ATGAAAAAGGAGCTTGTTGTGTTGGGCTCACGGCTCACCACACTTAGACC
TACAGACGGGCGGAGTCATTTCCTACCGGTATGTGACTGAAAAGACGGTC
GGCGCGGTGTATGGATGCGGTGATACATGCGTCGATATTGCGGGCTGTCC
CAAGTGCACTCATTCGTACAAAGGTGATATCCTGGACTACCTCAAAACGC
GCAGCCCCAAATCGTGTGTTCTATTCTCCACCGGCGTACTAGAGTTCACT
GACAAGTACGATGAAATCAAGCTAGAGATCGACAGGACATGCATAGCAAA
TTTTACGGAGTACTACAGCCCCTGGAATGTGACTTGGTATGCGTATGGCT
GCTCCTCCAACAACAGATGTGGCCTATTCAGAGGCATGCCGAGGAGAGTA
TTCTGGCGAACGCCTGTATGAACTAACTCTTCTCTGCGTTGCCCCGATCC
ATGCCGGCGTCGTACAATTTACCCATGTCACATTACAGGTTTCGGCGCCC
TCATGTGTATCATGCGGGAGGAGCCAGTCGTTAGTGGTTGGGCCCCTTGT
GCTATCATATCCCTGTATGGCATTCTGAGTGCGGTAGCTCCTGGCGTTCG
TTGCTGTCCATGTACGGCATTCTGAGCGCGGTTGCTCCTGGCATTCGTTT
GGCGGTGGTTTGACGGGCTGGTAGCTGTTGTAGAGGTAGTTTGGGACTTT
GTGCGTGTGTTGTTTTTGTTT
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Coding sequence (CDS) from alignment at F-distichus_contig10503:2468..3488-

>mRNA_F-distichus_contig10503.437.1 ID=mRNA_F-distichus_contig10503.437.1|Name=mRNA_F-distichus_contig10503.437.1|organism=Fucus distichus monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at F-distichus_contig10503:2468..3488- (Fucus distichus monoicous)
CAGGAGCAGGTTGAGTGTCGGTCGCATGAAGTGGTTCGAGCTTGGTTGAG
CCGGTGCTCCCCACCTGCCAGCCTGCCTGCCTGTGCGATCATCCGGGCGA
CGTTCTGGCGAAATCTGGAGAAATCAAATCAGGAGCAGGTTGAGTGTCGG
TCGCATGAAGTGGTTCGAGCTTGGTTGAGCCGGTGCTCCCCACCTGCCAG
CCTGCCTGCCTGTGCGATCATCCGGGCGACGTTCTGGCGAAATCTGGAGA
AATCAAATGTTTCGGCGCCCTCATGTGTATCATGCGGGAGGAGCCAGTCG
TTAGTGGTTGGGCCCCTTGTGCTATCATATCCCTGTATGGCATTCTGAGT
TTCGGCGCCCTCATGTGTATCATGCGGGAGGAGCCAGTCGTTAGTGGTTG
GGCCCCTTGTGCTATCATATCCCTGTATGGCATTCTGA
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