mRNA_F-distichus_contig10503.436.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10503.436.1
Unique NamemRNA_F-distichus_contig10503.436.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10503.436.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 303 bits (776), Expect = 4.140e-100
Identity = 150/256 (58.59%), Postives = 193/256 (75.39%), Query Frame = 1 
Query:    1 KKIPKGPSTKVWCNVSQLQARRLILRVGLGRDLVPADFATARKPNNLC*TLTKMLRSSCTKGWKVSKFVAAGGDGDVFR-VKADGTNAVMKVQIGSAQQINREIKTQKHFAK-GLAPKILAHCSFKPKNRLNLADHKRMNKLVKDTDVPFP-----PGGSLVHLVIMEAIDDVVGNWLRRLKSKEQLAQLTLEIFELIKAFKQHKLTHGDLHLDNIGYVYTDSSKKYMKLLPIDFGRSYVGKAHTSLEIGALMRIL 747
            K  P+    KVWC++SQ++ARRLIL+V LGRD+ P D ATA+ PN LC TLTKML  SC +GW+V+KF++AG  G VFR V  +GT+A +KVQ G A+++  E+  Q+ F K GLAPKI+ +CSFKPK RL +  H+R+N+ V+D  VPF      P G+LVH++IME I  V+G WLRR KS +QL +   EI +L+ AF+ H LTHGDLHL+NIGYVYTD+SK+YM+L+PIDFGRSYVGKA TSLE+GALMR L
Sbjct:    6 KAAPRPKQPKVWCDLSQIEARRLILKVALGRDIGPGDVATAKNPNRLCETLTKMLACSCMRGWRVTKFLSAGAYGHVFRAVHTNGTSAALKVQTGDAKRLRGELSAQRAFHKRGLAPKIIRYCSFKPKTRLGMVAHERLNRAVQDKSVPFQTEDESPAGNLVHVIIMEEIAGVLGQWLRREKSNQQLHKTAFEITKLMVAFRNHGLTHGDLHLNNIGYVYTDASKRYMRLMPIDFGRSYVGKAFTSLEVGALMRTL 261
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BLAST of mRNA_F-distichus_contig10503.436.1 vs. uniprot
Match: Q8QNH4_ESV1K (EsV-1-104 n=2 Tax=root TaxID=1 RepID=Q8QNH4_ESV1K)

HSP 1 Score: 74.7 bits (182), Expect = 3.830e-12
Identity = 60/220 (27.27%), Postives = 101/220 (45.91%), Query Frame = 1 
Query:   37 CNVSQLQARRLILRVGLGRDLVPADFATARKPNNLC*TLTKMLRSSCTKGWKVSKFVAAGGDGDVFRVKADGTNAVMKVQIGSAQQINREIKTQKHFAK-GLAPKILAHCSFKPKNRLNLADHKRMNKLVKDTDVPFPPGGSLVHLVIMEAIDDVVGNWLRRLKSKEQLAQLTLEIFELIKAFKQHKLTHGDLHLDNIGYVYTDSSKKYMKLLPIDFGRS 693
            CN+S LQ    + ++G    ++    A+ +  +++C  +TK L  +C K WK   F+ +G  G  F +  + +  V   +I S     RE++ Q+  A  G+APK+   C                 KL K   V       L    +  ++ D+VG    +   K++L  L  EI + ++A ++  ++HGDL LDN+GY+        + L  IDFG S
Sbjct:   29 CNISPLQVVNTLKKMGAPSHII----ASVKTRSDMCRNITKALDLNCLKNWKFRAFLGSGAHGSTFSI-VNKSGMVRAAKIVSVDPF-REVRAQRKMASIGVAPKVYDTC-----------------KLAKGVWV-------LTMDRVNGSVQDLVGG--HKSLGKKKLRNLFQEIVKTVEAMEKANVSHGDLSLDNMGYIVRPDGSYGVML--IDFGWS 214
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10503.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNC6_ESV1K4.140e-10058.59EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q8QNH4_ESV1K3.830e-1227.27EsV-1-104 n=2 Tax=root TaxID=1 RepID=Q8QNH4_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10503contigF-distichus_contig10503:167..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size753
Cds size594
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.1659946-CDS-F-distichus_contig10503:166..7601622928971.1659946-CDS-F-distichus_contig10503:166..760Fucus distichus monoicousCDSF-distichus_contig10503 167..760 -
1690885086.7478166-CDS-F-distichus_contig10503:166..7601690885086.7478166-CDS-F-distichus_contig10503:166..760Fucus distichus monoicousCDSF-distichus_contig10503 167..760 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.2235508-UTR-F-distichus_contig10503:760..9191622928971.2235508-UTR-F-distichus_contig10503:760..919Fucus distichus monoicousUTRF-distichus_contig10503 761..919 -
1690885086.75758-UTR-F-distichus_contig10503:760..9191690885086.75758-UTR-F-distichus_contig10503:760..919Fucus distichus monoicousUTRF-distichus_contig10503 761..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10503.436.1prot_F-distichus_contig10503.436.1Fucus distichus monoicouspolypeptideF-distichus_contig10503 167..760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10503.436.1

>prot_F-distichus_contig10503.436.1 ID=prot_F-distichus_contig10503.436.1|Name=mRNA_F-distichus_contig10503.436.1|organism=Fucus distichus monoicous|type=polypeptide|length=198bp
MLRSSCTKGWKVSKFVAAGGDGDVFRVKADGTNAVMKVQIGSAQQINREI
KTQKHFAKGLAPKILAHCSFKPKNRLNLADHKRMNKLVKDTDVPFPPGGS
LVHLVIMEAIDDVVGNWLRRLKSKEQLAQLTLEIFELIKAFKQHKLTHGD
LHLDNIGYVYTDSSKKYMKLLPIDFGRSYVGKAHTSLEIGALMRILKK
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mRNA from alignment at F-distichus_contig10503:167..919-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10503.436.1 ID=mRNA_F-distichus_contig10503.436.1|Name=mRNA_F-distichus_contig10503.436.1|organism=Fucus distichus monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at F-distichus_contig10503:167..919- (Fucus distichus monoicous)
AAAAAGATACCGAAGGGCCCCTCCACAAAGGTTTGGTGCAATGTGTCTCA
GCTGCAGGCCCGTCGTCTAATCCTCAGAGTTGGTCTCGGCCGTGACCTCG
TACCGGCGGACTTCGCGACGGCCAGGAAACCAAACAATCTGTGTTGAACA
TTGACCAAAATGCTCAGGAGCTCTTGTACGAAAGGTTGGAAAGTTAGCAA
GTTTGTCGCGGCGGGCGGCGACGGCGACGTATTCCGCGTGAAGGCTGACG
GTACGAACGCAGTCATGAAAGTTCAGATTGGCTCCGCGCAACAGATCAAT
CGTGAAATCAAAACCCAAAAACATTTTGCCAAGGGTCTCGCACCGAAAAT
ACTGGCACATTGTAGCTTTAAACCGAAGAACAGGCTAAATTTGGCTGATC
ACAAGCGAATGAACAAGCTTGTAAAGGACACCGATGTTCCTTTCCCGCCG
GGTGGGAGCCTTGTCCACCTGGTAATTATGGAGGCGATTGATGATGTTGT
CGGCAACTGGCTCCGCCGCCTAAAGTCCAAAGAACAGCTGGCACAGCTCA
CCCTCGAGATATTTGAACTCATCAAGGCTTTCAAGCAACACAAGCTGACA
CATGGAGACCTCCACCTAGACAACATCGGTTACGTATACACCGATAGCTC
CAAAAAGTACATGAAGCTCTTGCCAATCGATTTCGGCAGGTCGTACGTGG
GTAAAGCGCACACGAGCCTTGAAATTGGCGCGCTCATGCGTATCCTGAAG
AAG
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Coding sequence (CDS) from alignment at F-distichus_contig10503:167..919-

>mRNA_F-distichus_contig10503.436.1 ID=mRNA_F-distichus_contig10503.436.1|Name=mRNA_F-distichus_contig10503.436.1|organism=Fucus distichus monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at F-distichus_contig10503:167..919- (Fucus distichus monoicous)
ATGCTCAGGAGCTCTTGTACGAAAGGTTGGAAAGTTAGCAAGTTTGTCGC
GGCGGGCGGCGACGGCGACGTATTCCGCGTGAAGGCTGACGGTACGAACG
CAGTCATGAAAGTTCAGATTGGCTCCGCGCAACAGATCAATCGTGAAATC
AAAACCCAAAAACATTTTGCCAAGGGTCTCGCACCGAAAATACTGGCACA
TTGTAGCTTTAAACCGAAGAACAGGCTAAATTTGGCTGATCACAAGCGAA
TGAACAAGCTTGTAAAGGACACCGATGTTCCTTTCCCGCCGGGTGGGAGC
CTTGTCCACCTGGTAATTATGGAGGCGATTGATGATGTTGTCGGCAACTG
GCTCCGCCGCCTAAAGTCCAAAGAACAGCTGGCACAGCTCACCCTCGAGA
TATTTGAACTCATCAAGGCTTTCAAGCAACACAAGCTGACACATGGAGAC
CTCCACCTAGACAACATCGGTTACGTATACACCGATAGCTCCAAAAAGTA
CATGAAGCTCTTGCCAATCGATTTCGGCAGGTCGTACGTGGGTAAAGCGC
ACACGAGCCTTGAAATTGGCGCGCTCATGCGTATCCTGAAGAAGATGCTC
AGGAGCTCTTGTACGAAAGGTTGGAAAGTTAGCAAGTTTGTCGCGGCGGG
CGGCGACGGCGACGTATTCCGCGTGAAGGCTGACGGTACGAACGCAGTCA
TGAAAGTTCAGATTGGCTCCGCGCAACAGATCAATCGTGAAATCAAAACC
CAAAAACATTTTGCCAAGGGTCTCGCACCGAAAATACTGGCACATTGTAG
CTTTAAACCGAAGAACAGGCTAAATTTGGCTGATCACAAGCGAATGAACA
AGCTTGTAAAGGACACCGATGTTCCTTTCCCGCCGGGTGGGAGCCTTGTC
CACCTGGTAATTATGGAGGCGATTGATGATGTTGTCGGCAACTGGCTCCG
CCGCCTAAAGTCCAAAGAACAGCTGGCACAGCTCACCCTCGAGATATTTG
AACTCATCAAGGCTTTCAAGCAACACAAGCTGACACATGGAGACCTCCAC
CTAGACAACATCGGTTACGTATACACCGATAGCTCCAAAAAGTACATGAA
GCTCTTGCCAATCGATTTCGGCAGGTCGTACGTGGGTAAAGCGCACACGA
GCCTTGAAATTGGCGCGCTCATGCGTATCCTGAAGAAG
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