mRNA_F-distichus_contig104968.433.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104968.433.1
Unique NamemRNA_F-distichus_contig104968.433.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A225VYH6_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYH6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.330e-12
Identity = 45/133 (33.83%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   31 REALRAAVDTALEAGLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKG----NGYRLVGDFKAVNQQSEPV 417
            R+A+   +  ALE G P   E++LR ++     D +R +L  DPPA+VDP +++LK  A    +K++PR Y PA   ++ E  ++L + G V ENP +  ++P   V K     + YR   D++ VN   E +
Sbjct:  352 RDAIEKMLRAALEQGFPRRLESKLRAIVFK--HDVWRLTLGDDPPAKVDPLEIRLKEGA--KSIKSKPRQYPPAVRTFMREFNSKLVELGWVYENPTSRWASPVLPVRKAGMSVDEYRQTCDYRLVNDLIEAL 480          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A2P4XB16_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XB16_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.150e-11
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   31 REALRAAVDTALEAGLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPK---GNGYRLVGDFKAVNQQSEPVA 420
            RE L   V  A + G  S     LR+++     D FR  L  DPPA+V+P ++ L+ DA     +ARPR YSPA +A+L E    L   G +  N  ++ +  A  VPK    N +RL  D++ VN  + P+A
Sbjct:  146 REKLNEMVVAAGDNGFDSGYLDSLREIVFE-YEDVFRIDLLADPPAKVEPLRITLRSDA--KPFRARPRRYSPAQSAFLSEHVRSLEKMGYIRRNNMSVWACAAVPVPKVNRPNEFRLTIDYRPVNAVTVPIA 275          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: G5A2I4_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2I4_PHYSP)

HSP 1 Score: 59.3 bits (142), Expect = 9.420e-9
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   73 GLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCEN 315
            GL +    RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YSP + A+LD   A+L + G+V  N
Sbjct:   18 GLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 95          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.970e-9
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   73 GLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKGN-------GYRLVGDFKAVNQQSEPV 417
            GL +    RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YSP + A+LD   A+L + G+V  N ++  ++  + V K           R+  D + VN+++E +
Sbjct:  486 GLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESM 604          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.360e-8
Identity = 40/114 (35.09%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   97 RLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKGN-------GYRLVGDFKAVNQQSEPV 417
            RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YSP + A+LD   A+L + G+V  N ++  ++  + V K           R+  D + VN+++E +
Sbjct:   21 RLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESM 131          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A6A3VFD8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFD8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.490e-8
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   37 ALRAAVDTALEA----GLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKGN-------GYRLVGDFKAVNQQSEPV 417
            A+   +D+ L A    GL +    RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YSP + A+LD   A+L + G+V  N ++  ++  + V K           R+  D + VN+++E +
Sbjct:  434 AVHGMLDSKLAAARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAM 568          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.530e-8
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   73 GLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKGN-------GYRLVGDFKAVNQQSEPV 417
            GL +    RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YSP + A+LD   A+L + G+V  N ++  ++  + V K           R+  D + VN+++E +
Sbjct:  315 GLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAM 433          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.620e-8
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   73 GLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKGN-------GYRLVGDFKAVNQQSEPV 417
            GL +    RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YSP + A+LD   A+L + G+V  N ++  ++  + V K           R+  D + VN+++E +
Sbjct:  450 GLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAM 568          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.520e-8
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   73 GLPSDAETRLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKGN-------GYRLVGDFKAVNQQSEPV 417
            GL +    RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YS  + A+LD   A+L + G+V  N ++  ++  + V K           R+  D + VN+++E +
Sbjct:  407 GLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTK--AQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAM 525          
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Match: A0A6A3GI80_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GI80_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.970e-8
Identity = 40/114 (35.09%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   97 RLRDLLLGPLFDGFRRSLSGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAGMVCENPQAICSNPAQAVPKGN-------GYRLVGDFKAVNQQSEPV 417
            RLR++LL    D FR     DPP +V P QV++KV+A  +K  A+PR YSP + A+LD   A+L + G+V  N ++  ++  + V K           R+  D + VN+++E +
Sbjct:    5 RLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAM 115          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104968.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A225VYH6_9STRA1.330e-1233.83RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A2P4XB16_9STRA1.150e-1136.09Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
G5A2I4_PHYSP9.420e-943.21Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A3YWA9_9STRA9.970e-934.43Reverse transcriptase domain-containing protein n=... [more]
A0A6G0NWQ3_9STRA2.360e-835.09Reverse transcriptase domain-containing protein n=... [more]
A0A6A3VFD8_9STRA2.490e-833.33Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6G0MLJ8_9STRA3.530e-834.43Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3Q7S3_9STRA3.620e-834.43Uncharacterized protein n=6 Tax=Phytophthora fraga... [more]
A0A2P4WWJ1_9STRA6.520e-833.61Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A3GI80_9STRA8.970e-835.09Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104968contigF-distichus_contig104968:447..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog164328.Phyra87041
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH3I@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.651431-CDS-F-distichus_contig104968:446..8691622928970.651431-CDS-F-distichus_contig104968:446..869Fucus distichus monoicousCDSF-distichus_contig104968 447..869 -
1690885086.5604303-CDS-F-distichus_contig104968:446..8691690885086.5604303-CDS-F-distichus_contig104968:446..869Fucus distichus monoicousCDSF-distichus_contig104968 447..869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104968.433.1prot_F-distichus_contig104968.433.1Fucus distichus monoicouspolypeptideF-distichus_contig104968 447..869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104968.433.1

>prot_F-distichus_contig104968.433.1 ID=prot_F-distichus_contig104968.433.1|Name=mRNA_F-distichus_contig104968.433.1|organism=Fucus distichus monoicous|type=polypeptide|length=141bp
MEVGNEVIARREALRAAVDTALEAGLPSDAETRLRDLLLGPLFDGFRRSL
SGDPPARVDPFQVKLKVDADLSKVKARPRVYSPANTAWLDEQFAQLADAG
MVCENPQAICSNPAQAVPKGNGYRLVGDFKAVNQQSEPVAA
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mRNA from alignment at F-distichus_contig104968:447..869-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104968.433.1 ID=mRNA_F-distichus_contig104968.433.1|Name=mRNA_F-distichus_contig104968.433.1|organism=Fucus distichus monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at F-distichus_contig104968:447..869- (Fucus distichus monoicous)
ATGGAGGTTGGCAATGAAGTAATCGCCCGTCGGGAAGCGCTGAGGGCGGC CGTGGATACTGCGCTGGAGGCTGGTTTGCCGTCTGACGCCGAGACTCGTC TACGTGATCTCTTGCTTGGTCCGCTGTTTGATGGGTTTCGTCGATCATTG TCGGGGGATCCACCGGCGAGGGTGGACCCTTTCCAAGTGAAGCTGAAGGT GGATGCCGATTTGTCCAAGGTGAAGGCAAGGCCAAGGGTATATTCACCGG CAAATACGGCATGGCTGGACGAGCAGTTTGCGCAACTTGCCGACGCCGGA ATGGTGTGCGAGAACCCACAAGCGATATGTTCAAATCCTGCCCAGGCGGT TCCGAAGGGCAATGGCTACCGCTTGGTTGGTGATTTCAAGGCTGTTAATC AACAGAGTGAGCCGGTGGCTGCC
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Coding sequence (CDS) from alignment at F-distichus_contig104968:447..869-

>mRNA_F-distichus_contig104968.433.1 ID=mRNA_F-distichus_contig104968.433.1|Name=mRNA_F-distichus_contig104968.433.1|organism=Fucus distichus monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at F-distichus_contig104968:447..869- (Fucus distichus monoicous)
ATGGAGGTTGGCAATGAAGTAATCGCCCGTCGGGAAGCGCTGAGGGCGGC
CGTGGATACTGCGCTGGAGGCTGGTTTGCCGTCTGACGCCGAGACTCGTC
TACGTGATCTCTTGCTTGGTCCGCTGTTTGATGGGTTTCGTCGATCATTG
TCGGGGGATCCACCGGCGAGGGTGGACCCTTTCCAAGTGAAGCTGAAGGT
GGATGCCGATTTGTCCAAGGTGAAGGCAAGGCCAAGGGTATATTCACCGG
CAAATACGGCATGGCTGGACGAGCAGTTTGCGCAACTTGCCGACGCCGGA
ATGGTGTGCGAGAACCCACAAGCGATATGTTCAAATCCTGCCCAGGCGGT
TCCGAAGGGCAATGGCTACCGCTTGGTTGGTGATTTCAAGGCTGTTAATC
AACAGAGTGAGCCGGTGGCTGCCATGGAGGTTGGCAATGAAGTAATCGCC
CGTCGGGAAGCGCTGAGGGCGGCCGTGGATACTGCGCTGGAGGCTGGTTT
GCCGTCTGACGCCGAGACTCGTCTACGTGATCTCTTGCTTGGTCCGCTGT
TTGATGGGTTTCGTCGATCATTGTCGGGGGATCCACCGGCGAGGGTGGAC
CCTTTCCAAGTGAAGCTGAAGGTGGATGCCGATTTGTCCAAGGTGAAGGC
AAGGCCAAGGGTATATTCACCGGCAAATACGGCATGGCTGGACGAGCAGT
TTGCGCAACTTGCCGACGCCGGAATGGTGTGCGAGAACCCACAAGCGATA
TGTTCAAATCCTGCCCAGGCGGTTCCGAAGGGCAATGGCTACCGCTTGGT
TGGTGATTTCAAGGCTGTTAATCAACAGAGTGAGCCGGTGGCTGCC
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