mRNA_F-distichus_contig104951.432.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104951.432.1
Unique NamemRNA_F-distichus_contig104951.432.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104951.432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104951contigF-distichus_contig104951:2..1975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1726
Cds size954
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104951.432.1prot_F-distichus_contig104951.432.1Fucus distichus monoicouspolypeptideF-distichus_contig104951 785..1975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.5725162-UTR-F-distichus_contig104951:1..7451622928970.5725162-UTR-F-distichus_contig104951:1..745Fucus distichus monoicousUTRF-distichus_contig104951 2..745 +
1690885086.5085623-UTR-F-distichus_contig104951:1..7451690885086.5085623-UTR-F-distichus_contig104951:1..745Fucus distichus monoicousUTRF-distichus_contig104951 2..745 +
1622928970.5847216-UTR-F-distichus_contig104951:756..7841622928970.5847216-UTR-F-distichus_contig104951:756..784Fucus distichus monoicousUTRF-distichus_contig104951 757..784 +
1690885086.5189443-UTR-F-distichus_contig104951:756..7841690885086.5189443-UTR-F-distichus_contig104951:756..784Fucus distichus monoicousUTRF-distichus_contig104951 757..784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.596209-CDS-F-distichus_contig104951:784..10201622928970.596209-CDS-F-distichus_contig104951:784..1020Fucus distichus monoicousCDSF-distichus_contig104951 785..1020 +
1690885086.5270827-CDS-F-distichus_contig104951:784..10201690885086.5270827-CDS-F-distichus_contig104951:784..1020Fucus distichus monoicousCDSF-distichus_contig104951 785..1020 +
1622928970.6068685-CDS-F-distichus_contig104951:1257..19751622928970.6068685-CDS-F-distichus_contig104951:1257..1975Fucus distichus monoicousCDSF-distichus_contig104951 1258..1975 +
1690885086.538432-CDS-F-distichus_contig104951:1257..19751690885086.538432-CDS-F-distichus_contig104951:1257..1975Fucus distichus monoicousCDSF-distichus_contig104951 1258..1975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104951.432.1

>prot_F-distichus_contig104951.432.1 ID=prot_F-distichus_contig104951.432.1|Name=mRNA_F-distichus_contig104951.432.1|organism=Fucus distichus monoicous|type=polypeptide|length=318bp
MNRDVGGMPNREGHSGSAGRPAGADVGQEMRTTARGSAMFGGGPPGMGQG
PPRGPSSEKRGTNGPVGPGFVARDRNINRNFSQERTGGNGGGGSMESGMP
GNNRSPQEHGVPMDGRGSRQTNQQPRAPGADIGRVPPVMNRGQLPPPPPL
APSHHHLEQRSPGGHSMERRGPGGVGAANSGGGGVGMDRSIRPPHHLERL
VGGGPVGPGGPMGPGGPVMPAGIQRVVGDPSGDRGGGGHQGSMGREGAGF
GPGGGMGFGPSSGVPNLNNPPPQDGSVVRGTGGGTLGGLAAGGRGVAGFG
SAPSFGPIGQGDPVFGPP
back to top

mRNA from alignment at F-distichus_contig104951:2..1975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104951.432.1 ID=mRNA_F-distichus_contig104951.432.1|Name=mRNA_F-distichus_contig104951.432.1|organism=Fucus distichus monoicous|type=mRNA|length=1974bp|location=Sequence derived from alignment at F-distichus_contig104951:2..1975+ (Fucus distichus monoicous)
GGGCCGTCAGAAAACATACGAAGGCAGCTAGAAAATATGCGTATGTCGGC
AGAAAGCATGCGCGGATCGGTAGACAACATGCGCGGACCAGGAGAAAATA
CACGTGGACTGGGAGAGAATATGCGCGCCGGTGGAAGCGGAGGCGGTGGA
GCCCAGGGAATGCCCCTGCCGAGCAATATGAAGGGGAACGATCGGCGCGG
GGACGGGCGAGGTGGGAGCAACGTCGGCGTTCGTCCCCCCTCCGGTGGTC
CGCGTAACGGCCCAGACGGGATGCGAGGAGACTCGCGCGGGAGCCCCGGA
GACGGCGCTCAAGGTAACAATAATATCCCTACCGGAGTTCGGGGAGGTGG
TATTCGAGGTGGGAGGTCCCCCATGAGACCCGGGATGGACGGGGGGCCGA
ACGGCATGCGAGGGGACACCGGGGGTGGAAGTGGTGGTGGCAACATGGGT
GCGGGTCGAAGCGTGGAACGGGGTCCTTCCGGAGTGATGGGAGCCCAGCC
ACCCGTTTCTCACGGCATGTACCCCAGAGGAGGAGGGGAAGGGTCGCCGT
TCGGGCCCCCCGGCGGCAGGGGCCGCAATGGACGTTCGCCGGTGCGACAA
GGGTCGGAAGAAGGGGGGCCGCGTCAGGGGGCTCCTGGGATGAGAATGGG
CGGCCCAGGCCCACGCCCGGGACAGCAGCAAGACGCAGGGCCGGGGGCAC
GGGCGTTAGGCGGCCCTGGAGGAAACATGCACGCTAGTGGGGGACGAAAC
GGCGTGGGAGGCGAAGGCTTGGGTCGACCGGGAATGAATCGGGACGTCGG
TGGGATGCCCAATCGCGAAGGTCACTCGGGGTCCGCCGGAAGACCAGCTG
GAGCGGACGTTGGGCAGGAGATGCGCACGACCGCAAGGGGGTCAGCTATG
TTTGGGGGAGGTCCGCCGGGAATGGGTCAAGGACCGCCTCGCGGACCGAG
CTCTGAAAAACGGGGAACGAACGGTCCCGTCGGCCCGGGATTCGTTGCGC
GGGATCGTAACATAAACAGGTATGGGTACTTCAGACAAATTTATCAAAGT
TTTAGCTTGTCGTCTGGGAAGTTTCTTGATATTGTGAGGAGGCGGGGAAT
GGGGTGGAGAGGGGTGCATATGCGATCCCGCTTTAGCTACAGAATCATTT
GCAGGGGGGAGGGGGGTTGAAGTGTTGCACTTCGCGGATGTGAAAATGCT
CAAAGCGCCTCGCGCCTACGTATTGCGCTCGTGTTGCTCTTTCTCCTTTC
CACCAGAAATTTCTCGCAAGAACGAACTGGCGGTAATGGCGGCGGTGGTA
GTATGGAGAGTGGTATGCCGGGCAACAACCGTTCTCCTCAAGAGCATGGT
GTCCCCATGGACGGCCGAGGATCACGACAGACCAACCAACAACCCAGGGC
CCCGGGAGCCGACATCGGTCGAGTCCCACCCGTTATGAATCGAGGCCAGC
TTCCTCCGCCACCGCCCCTGGCACCATCTCACCACCACCTGGAGCAGCGT
AGCCCAGGAGGACATAGTATGGAACGCCGTGGCCCGGGAGGCGTGGGGGC
AGCTAACAGTGGTGGTGGCGGCGTGGGCATGGACCGCAGCATTAGGCCGC
CGCATCATTTGGAGCGCTTGGTCGGTGGAGGACCTGTAGGCCCCGGCGGG
CCGATGGGCCCCGGTGGACCCGTCATGCCAGCGGGTATCCAAAGGGTGGT
TGGAGACCCCTCGGGTGATCGGGGTGGCGGGGGCCACCAAGGGTCCATGG
GGCGCGAAGGAGCGGGGTTTGGCCCCGGCGGCGGGATGGGCTTCGGCCCG
AGCAGCGGCGTCCCCAACTTGAACAATCCTCCGCCCCAGGACGGTTCGGT
CGTTCGGGGAACCGGTGGGGGCACGCTGGGCGGCCTGGCGGCCGGTGGCC
GTGGCGTCGCCGGGTTTGGAAGTGCACCCTCCTTTGGTCCGATTGGCCAA
GGTGATCCCGTTTTTGGCCCTCCC
back to top

Coding sequence (CDS) from alignment at F-distichus_contig104951:2..1975+

>mRNA_F-distichus_contig104951.432.1 ID=mRNA_F-distichus_contig104951.432.1|Name=mRNA_F-distichus_contig104951.432.1|organism=Fucus distichus monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at F-distichus_contig104951:2..1975+ (Fucus distichus monoicous)
ATGAATCGGGACGTCGGTGGGATGCCCAATCGCGAAGGTCACTCGGGGTC
CGCCGGAAGACCAGCTGGAGCGGACGTTGGGCAGGAGATGCGCACGACCG
CAAGGGGGTCAGCTATGTTTGGGGGAGGTCCGCCGGGAATGGGTCAAGGA
CCGCCTCGCGGACCGAGCTCTGAAAAACGGGGAACGAACGGTCCCGTCGG
CCCGGGATTCGTTGCGCGGGATCGTAACATAAACAGATGAATCGGGACGT
CGGTGGGATGCCCAATCGCGAAGGTCACTCGGGGTCCGCCGGAAGACCAG
CTGGAGCGGACGTTGGGCAGGAGATGCGCACGACCGCAAGGGGGTCAGCT
ATGTTTGGGGGAGGTCCGCCGGGAATGGGTCAAGGACCGCCTCGCGGACC
GAGCTCTGAAAAACGGGGAACGAACGGTCCCGTCGGCCCGGGATTCGTTG
CGCGGGATCGTAACATAAACAGAAATTTCTCGCAAGAACGAACTGGCGGT
AATGGCGGCGGTGGTAGTATGGAGAGTGGTATGCCGGGCAACAACCGTTC
TCCTCAAGAGCATGGTGTCCCCATGGACGGCCGAGGATCACGACAGACCA
ACCAACAACCCAGGGCCCCGGGAGCCGACATCGGTCGAGTCCCACCCGTT
ATGAATCGAGGCCAGCTTCCTCCGCCACCGCCCCTGGCACCATCTCACCA
CCACCTGGAGCAGCGTAGCCCAGGAGGACATAGTATGGAACGCCGTGGCC
CGGGAGGCGTGGGGGCAGCTAACAGTGGTGGTGGCGGCGTGGGCATGGAC
CGCAGCATTAGGCCGCCGCATCATTTGGAGCGCTTGGTCGGTGGAGGACC
TGTAGGCCCCGGCGGGCCGATGGGCCCCGGTGGACCCGTCATGCCAGCGG
GTATCCAAAGGGTGGTTGGAGACCCCTCGGGTGATCGGGGTGGCGGGGGC
CACCAAGGGTCCATGGGGCGCGAAGGAGCGGGGTTTGGCCCCGGCGGCGG
GATGGGCTTCGGCCCGAGCAGCGGCGTCCCCAACTTGAACAATCCTCCGC
CCCAGGACGGTTCGGTCGTTCGGGGAACCGGTGGGGGCACGCTGGGCGGC
CTGGCGGCCGGTGGCCGTGGCGTCGCCGGGTTTGGAAGTGCACCCTCCTT
TGGTCCGATTGGCCAAGGTGATCCCGTTTTTGGCCCTCCCAAATTTCTCG
CAAGAACGAACTGGCGGTAATGGCGGCGGTGGTAGTATGGAGAGTGGTAT
GCCGGGCAACAACCGTTCTCCTCAAGAGCATGGTGTCCCCATGGACGGCC
GAGGATCACGACAGACCAACCAACAACCCAGGGCCCCGGGAGCCGACATC
GGTCGAGTCCCACCCGTTATGAATCGAGGCCAGCTTCCTCCGCCACCGCC
CCTGGCACCATCTCACCACCACCTGGAGCAGCGTAGCCCAGGAGGACATA
GTATGGAACGCCGTGGCCCGGGAGGCGTGGGGGCAGCTAACAGTGGTGGT
GGCGGCGTGGGCATGGACCGCAGCATTAGGCCGCCGCATCATTTGGAGCG
CTTGGTCGGTGGAGGACCTGTAGGCCCCGGCGGGCCGATGGGCCCCGGTG
GACCCGTCATGCCAGCGGGTATCCAAAGGGTGGTTGGAGACCCCTCGGGT
GATCGGGGTGGCGGGGGCCACCAAGGGTCCATGGGGCGCGAAGGAGCGGG
GTTTGGCCCCGGCGGCGGGATGGGCTTCGGCCCGAGCAGCGGCGTCCCCA
ACTTGAACAATCCTCCGCCCCAGGACGGTTCGGTCGTTCGGGGAACCGGT
GGGGGCACGCTGGGCGGCCTGGCGGCCGGTGGCCGTGGCGTCGCCGGGTT
TGGAAGTGCACCCTCCTTTGGTCCGATTGGCCAAGGTGATCCCGTTTTTG
GCCCTCCC
back to top