mRNA_F-distichus_contig104898.428.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104898.428.1
Unique NamemRNA_F-distichus_contig104898.428.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104898.428.1 vs. uniprot
Match: A0A6H5JAD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 9.080e-15
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 FTEAFSRVEQALELSPLDHAEAMGLEAWEVGDNSGTIAGFKGKKV 153
            F  AFS VEQALELSPLDHAEAMGLE WE   +SGTIAGFKGKKV
Sbjct:   16 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGKKV 60
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BLAST of mRNA_F-distichus_contig104898.428.1 vs. uniprot
Match: D8LIG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.860e-14
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   19 FTEAFSRVEQALELSPLDHAEAMGLEAWEVGDNSGTIAGFKGKKV 153
            F  AFS VEQALELSPLDHAEAMGLE WE   +SGTIAGFKG+KV
Sbjct:  159 FAAAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGRKV 203
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104898.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAD8_9PHAE9.080e-1582.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIG6_ECTSI4.860e-1480.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104898contigF-distichus_contig104898:252..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D8LIG6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CHM3@1,2T2RF@2759
Ec32 ortholog descriptionRed chlorophyll catabolite reductase
Ec32 orthologEc-18_003740.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.109123-CDS-F-distichus_contig104898:251..4041622928970.109123-CDS-F-distichus_contig104898:251..404Fucus distichus monoicousCDSF-distichus_contig104898 252..404 +
1690885086.1963396-CDS-F-distichus_contig104898:251..4041690885086.1963396-CDS-F-distichus_contig104898:251..404Fucus distichus monoicousCDSF-distichus_contig104898 252..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104898.428.1prot_F-distichus_contig104898.428.1Fucus distichus monoicouspolypeptideF-distichus_contig104898 252..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104898.428.1

>prot_F-distichus_contig104898.428.1 ID=prot_F-distichus_contig104898.428.1|Name=mRNA_F-distichus_contig104898.428.1|organism=Fucus distichus monoicous|type=polypeptide|length=51bp
AAVGEGFTEAFSRVEQALELSPLDHAEAMGLEAWEVGDNSGTIAGFKGKK
V
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mRNA from alignment at F-distichus_contig104898:252..404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104898.428.1 ID=mRNA_F-distichus_contig104898.428.1|Name=mRNA_F-distichus_contig104898.428.1|organism=Fucus distichus monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at F-distichus_contig104898:252..404+ (Fucus distichus monoicous)
GCAGCGGTCGGCGAGGGGTTTACGGAGGCGTTCTCCAGAGTAGAGCAAGC
CCTCGAGCTTTCGCCGCTGGACCACGCCGAGGCTATGGGGCTGGAAGCCT
GGGAGGTAGGGGACAACAGCGGCACGATCGCGGGCTTCAAAGGGAAAAAG
GTA
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Coding sequence (CDS) from alignment at F-distichus_contig104898:252..404+

>mRNA_F-distichus_contig104898.428.1 ID=mRNA_F-distichus_contig104898.428.1|Name=mRNA_F-distichus_contig104898.428.1|organism=Fucus distichus monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at F-distichus_contig104898:252..404+ (Fucus distichus monoicous)
GCAGCGGTCGGCGAGGGGTTTACGGAGGCGTTCTCCAGAGTAGAGCAAGC
CCTCGAGCTTTCGCCGCTGGACCACGCCGAGGCTATGGGGCTGGAAGCCT
GGGAGGTAGGGGACAACAGCGGCACGATCGCGGGCTTCAAAGGGAAAAAG
GTAGCAGCGGTCGGCGAGGGGTTTACGGAGGCGTTCTCCAGAGTAGAGCA
AGCCCTCGAGCTTTCGCCGCTGGACCACGCCGAGGCTATGGGGCTGGAAG
CCTGGGAGGTAGGGGACAACAGCGGCACGATCGCGGGCTTCAAAGGGAAA
AAGGTA
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