mRNA_F-distichus_contig104846.427.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104846.427.1
Unique NamemRNA_F-distichus_contig104846.427.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: D7FSY5_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY5_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.150e-37
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFDRR 210
            RELPIRWAE+GTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+EDEIISVLDLTEAILSRFGFDRR
Sbjct:  390 RELPIRWAEMGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLEDEIISVLDLTEAILSRFGFDRR 457
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BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A7R9WD93_9STRA (Threonine--tRNA ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD93_9STRA)

HSP 1 Score: 133 bits (335), Expect = 8.600e-37
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFDRRD 213
            R+LPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLP+Q+EDEI++VLDLTE+ILSRFGFD+ D
Sbjct:  232 RDLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPDQLEDEIVAVLDLTESILSRFGFDKYD 300
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BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.700e-36
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFDRR 210
            R LPIRWAE+GTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+EDEIISVLDLTEAILSRFGFDRR
Sbjct:  389 RHLPIRWAEMGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLEDEIISVLDLTEAILSRFGFDRR 456
[Close]
BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A7S2G206_9STRA (Threonine--tRNA ligase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G206_9STRA)

HSP 1 Score: 122 bits (306), Expect = 9.750e-35
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:   13 LPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGF 201
            LP RWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+ DEI+ VLDLTE+ILSRFGF
Sbjct:    1 LPKRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLTDEIVGVLDLTESILSRFGF 63
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BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A7S1GIN9_CYCTE (Threonine--tRNA ligase (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIN9_CYCTE)

HSP 1 Score: 128 bits (321), Expect = 2.230e-34
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFDRRD 213
            RELPIRW ELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ++DEI+ VLDL E ILSRFGF++ D
Sbjct:   57 RELPIRWGELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLQDEIVGVLDLAEKILSRFGFNKYD 125
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BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A1Z5K8X1_FISSO (Threonine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X1_FISSO)

HSP 1 Score: 132 bits (331), Expect = 2.890e-34
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFDRRD 213
            R+LP RWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+EDEI+ VLDLTE ILSRFGFD+ D
Sbjct:  373 RDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLEDEIVGVLDLTERILSRFGFDKYD 441
[Close]
BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: B5Y5F7_PHATC (Threonine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5F7_PHATC)

HSP 1 Score: 131 bits (329), Expect = 5.660e-34
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFDRRD 213
            R+LP RWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ++DEI+ VLDLTE ILSRFGFD+ D
Sbjct:  379 RDLPFRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLQDEIVGVLDLTETILSRFGFDKYD 447
[Close]
BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A7S0D919_9EUKA (Threonine--tRNA ligase n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D919_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 6.640e-34
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFD 204
            RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLP Q+EDE++ VLDLTE+ILSRFGFD
Sbjct:  275 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPNQLEDELVGVLDLTESILSRFGFD 340
[Close]
BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A7S3YRZ8_9EUKA (Threonine--tRNA ligase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YRZ8_9EUKA)

HSP 1 Score: 127 bits (319), Expect = 6.200e-33
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGF 201
            RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDD HIFCLP Q+EDEI+ VLDLTE++LSRFGF
Sbjct:  295 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDGHIFCLPSQLEDEIVGVLDLTESVLSRFGF 359
[Close]
BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Match: A0A7S2MRP2_9STRA (Threonine--tRNA ligase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MRP2_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.120e-33
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    7 RELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDEIISVLDLTEAILSRFGFDR 207
            R+LPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQ+ DEI+ VLDLTE ILSRFGF++
Sbjct:  384 RDLPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQLTDEIVQVLDLTERILSRFGFEK 450
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104846.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY5_ECTSI1.150e-3797.06Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
A0A7R9WD93_9STRA8.600e-3788.41Threonine--tRNA ligase (Fragment) n=1 Tax=Pseudict... [more]
A0A6H5JBI8_9PHAE3.700e-3695.59Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
A0A7S2G206_9STRA9.750e-3590.48Threonine--tRNA ligase (Fragment) n=1 Tax=Florenci... [more]
A0A7S1GIN9_CYCTE2.230e-3485.51Threonine--tRNA ligase (Fragment) n=1 Tax=Cyclopho... [more]
A0A1Z5K8X1_FISSO2.890e-3488.41Threonine--tRNA ligase n=2 Tax=Fistulifera solaris... [more]
B5Y5F7_PHATC5.660e-3486.96Threonine--tRNA ligase n=1 Tax=Phaeodactylum trico... [more]
A0A7S0D919_9EUKA6.640e-3490.91Threonine--tRNA ligase n=2 Tax=Amorphochlora amoeb... [more]
A0A7S3YRZ8_9EUKA6.200e-3389.23Threonine--tRNA ligase (Fragment) n=1 Tax=Lotharel... [more]
A0A7S2MRP2_9STRA7.120e-3388.06Threonine--tRNA ligase n=2 Tax=Dictyocha speculum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104846contigF-distichus_contig104846:1269..1481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.2e-31
Seed eggNOG ortholog2880.D7FSY5
KEGG rclassRC00055,RC00523
KEGG koko:K01868
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.threonyl-tRNA aminoacylation
EggNOG OGsCOG0441@1,KOG1637@2759
EC6.1.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.0549676-CDS-F-distichus_contig104846:1268..14811622928970.0549676-CDS-F-distichus_contig104846:1268..1481Fucus distichus monoicousCDSF-distichus_contig104846 1269..1481 -
1690885086.1839905-CDS-F-distichus_contig104846:1268..14811690885086.1839905-CDS-F-distichus_contig104846:1268..1481Fucus distichus monoicousCDSF-distichus_contig104846 1269..1481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104846.427.1prot_F-distichus_contig104846.427.1Fucus distichus monoicouspolypeptideF-distichus_contig104846 1269..1481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104846.427.1

>prot_F-distichus_contig104846.427.1 ID=prot_F-distichus_contig104846.427.1|Name=mRNA_F-distichus_contig104846.427.1|organism=Fucus distichus monoicous|type=polypeptide|length=71bp
MGRELPIRWAELGTVYRYERSGTLHGLMRVRGFTQDDAHIFCLPEQVEDE
IISVLDLTEAILSRFGFDRRD
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mRNA from alignment at F-distichus_contig104846:1269..1481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104846.427.1 ID=mRNA_F-distichus_contig104846.427.1|Name=mRNA_F-distichus_contig104846.427.1|organism=Fucus distichus monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at F-distichus_contig104846:1269..1481- (Fucus distichus monoicous)
ATGGGCAGAGAGCTGCCGATTCGATGGGCGGAGCTTGGAACCGTGTATCG
CTACGAACGCAGCGGCACGTTGCACGGCCTGATGAGGGTTCGAGGGTTCA
CTCAGGACGACGCGCACATCTTCTGTCTCCCGGAGCAAGTGGAGGACGAG
ATCATTTCCGTGCTGGACCTGACGGAAGCCATCCTCAGCCGCTTCGGCTT
TGACAGGCGAGAC
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Coding sequence (CDS) from alignment at F-distichus_contig104846:1269..1481-

>mRNA_F-distichus_contig104846.427.1 ID=mRNA_F-distichus_contig104846.427.1|Name=mRNA_F-distichus_contig104846.427.1|organism=Fucus distichus monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at F-distichus_contig104846:1269..1481- (Fucus distichus monoicous)
ATGGGCAGAGAGCTGCCGATTCGATGGGCGGAGCTTGGAACCGTGTATCG
CTACGAACGCAGCGGCACGTTGCACGGCCTGATGAGGGTTCGAGGGTTCA
CTCAGGACGACGCGCACATCTTCTGTCTCCCGGAGCAAGTGGAGGACGAG
ATCATTTCCGTGCTGGACCTGACGGAAGCCATCCTCAGCCGCTTCGGCTT
TGACAGGCGAGACATGGGCAGAGAGCTGCCGATTCGATGGGCGGAGCTTG
GAACCGTGTATCGCTACGAACGCAGCGGCACGTTGCACGGCCTGATGAGG
GTTCGAGGGTTCACTCAGGACGACGCGCACATCTTCTGTCTCCCGGAGCA
AGTGGAGGACGAGATCATTTCCGTGCTGGACCTGACGGAAGCCATCCTCA
GCCGCTTCGGCTTTGACAGGCGAGAC
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