mRNA_F-distichus_contig104794.425.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104794.425.1
Unique NamemRNA_F-distichus_contig104794.425.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104794.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104794contigF-distichus_contig104794:85..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.7705548-UTR-F-distichus_contig104794:84..2241622928969.7705548-UTR-F-distichus_contig104794:84..224Fucus distichus monoicousUTRF-distichus_contig104794 85..224 +
1690885086.0882876-UTR-F-distichus_contig104794:84..2241690885086.0882876-UTR-F-distichus_contig104794:84..224Fucus distichus monoicousUTRF-distichus_contig104794 85..224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.7885094-CDS-F-distichus_contig104794:224..6021622928969.7885094-CDS-F-distichus_contig104794:224..602Fucus distichus monoicousCDSF-distichus_contig104794 225..602 +
1690885086.0973823-CDS-F-distichus_contig104794:224..6021690885086.0973823-CDS-F-distichus_contig104794:224..602Fucus distichus monoicousCDSF-distichus_contig104794 225..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104794.425.1prot_F-distichus_contig104794.425.1Fucus distichus monoicouspolypeptideF-distichus_contig104794 225..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104794.425.1

>prot_F-distichus_contig104794.425.1 ID=prot_F-distichus_contig104794.425.1|Name=mRNA_F-distichus_contig104794.425.1|organism=Fucus distichus monoicous|type=polypeptide|length=126bp
MNLNSSAFAEASAAVMPRFFLGPSAGIAALALADAGSPPPPPDLKAPAMV
SSAEEAIAKNALVDESSLQASNWSPHSRTSVESSEFLTDSRTSNFSSLFS
VRGHFSSSPSWLLSPSILSRGPVRSL
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mRNA from alignment at F-distichus_contig104794:85..602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104794.425.1 ID=mRNA_F-distichus_contig104794.425.1|Name=mRNA_F-distichus_contig104794.425.1|organism=Fucus distichus monoicous|type=mRNA|length=518bp|location=Sequence derived from alignment at F-distichus_contig104794:85..602+ (Fucus distichus monoicous)
TCTTCAAATTTTACGAGGGAGCGACGTGCGTATAACCTTTTCCTACACGC
CAAAACAATTATTCTCACTACTCTTCCTCATCGATTTTGACAAGGGAGCG
CCGTGCGTATGACATCAGTGTCTCGTCATTCGTCGACGCCATGAACCTCA
ACAGCTCAGCGTTTGCTGAGGCCTCTGCGGCGGTTATGCCGCGTTTTTTT
CTGGGCCCTTCGGCGGGCATTGCGGCGCTGGCGCTGGCAGACGCCGGATC
ACCGCCGCCACCGCCAGATCTAAAAGCCCCGGCAATGGTTTCGAGTGCAG
AGGAAGCTATCGCAAAAAATGCATTGGTGGACGAATCATCTTTGCAAGCG
TCAAACTGGTCTCCGCACTCTCGTACCTCCGTTGAAAGCTCAGAGTTCTT
GACAGATTCCAGGACGTCGAATTTTTCGAGCTTGTTCAGTGTACGAGGCC
ACTTCTCTTCGTCCCCGTCCTGGCTATTATCTCCATCCATATTGTCACGA
GGCCCTGTGCGCTCGCTC
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Coding sequence (CDS) from alignment at F-distichus_contig104794:85..602+

>mRNA_F-distichus_contig104794.425.1 ID=mRNA_F-distichus_contig104794.425.1|Name=mRNA_F-distichus_contig104794.425.1|organism=Fucus distichus monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at F-distichus_contig104794:85..602+ (Fucus distichus monoicous)
ATGAACCTCAACAGCTCAGCGTTTGCTGAGGCCTCTGCGGCGGTTATGCC
GCGTTTTTTTCTGGGCCCTTCGGCGGGCATTGCGGCGCTGGCGCTGGCAG
ACGCCGGATCACCGCCGCCACCGCCAGATCTAAAAGCCCCGGCAATGGTT
TCGAGTGCAGAGGAAGCTATCGCAAAAAATGCATTGGTGGACGAATCATC
TTTGCAAGCGTCAAACTGGTCTCCGCACTCTCGTACCTCCGTTGAAAGCT
CAGAGTTCTTGACAGATTCCAGGACGTCGAATTTTTCGAGCTTGTTCAGT
GTACGAGGCCACTTCTCTTCGTCCCCGTCCTGGCTATTATCTCCATCCAT
ATTGTCACGAGGCCCTGTGCGCTCGCTCATGAACCTCAACAGCTCAGCGT
TTGCTGAGGCCTCTGCGGCGGTTATGCCGCGTTTTTTTCTGGGCCCTTCG
GCGGGCATTGCGGCGCTGGCGCTGGCAGACGCCGGATCACCGCCGCCACC
GCCAGATCTAAAAGCCCCGGCAATGGTTTCGAGTGCAGAGGAAGCTATCG
CAAAAAATGCATTGGTGGACGAATCATCTTTGCAAGCGTCAAACTGGTCT
CCGCACTCTCGTACCTCCGTTGAAAGCTCAGAGTTCTTGACAGATTCCAG
GACGTCGAATTTTTCGAGCTTGTTCAGTGTACGAGGCCACTTCTCTTCGT
CCCCGTCCTGGCTATTATCTCCATCCATATTGTCACGAGGCCCTGTGCGC
TCGCTC
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