mRNA_F-distichus_contig104766.422.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104766.422.1
Unique NamemRNA_F-distichus_contig104766.422.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.890e-16
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   10 YQERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            Y++RA+ L G E+  F+LVC +AT  QWAEWLR PLEHAA  ADH+LV  LL AGA +G  GW G
Sbjct:    7 YEDRANILRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGA-NGSTGWVG 70
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.910e-16
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   10 YQERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            Y+ERAS L+ L + IFKLVC +AT  QWAEWLR PLEHAA   + +LVD LL AGA  G  GWRG
Sbjct:    4 YEERASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVG-AGWRG 67
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.930e-15
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   13 QERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            ++RA  L     +IFKL+C +AT  QWAEWLR PLEHAA  A+ +LV+ LL+AGA DG  GWRG
Sbjct:    9 EDRAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGA-DGSAGWRG 71
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: D7G2A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 7.100e-15
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   19 RASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            RA  ++ L + IFKLVC + T  QW+EWLR PLEHAA  A++ELV  LLRAGA  G   WRG
Sbjct:    2 RARIMQDLGDTIFKLVCDRVTAEQWSEWLRAPLEHAAATANYELVSKLLRAGANGG-ASWRG 62
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.700e-14
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   10 YQERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            Y+ER+S L+ L +  FKLV  +AT +QWAEWLR PLEHAA   + +LVD LL AGA  G  GWRG
Sbjct:   46 YEERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGG-AGWRG 109
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: D7FQP2_ECTSI (Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.110e-14
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   13 QERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            ++R   L    ++IFKL+C +AT  QW EWLR PLEHAA  A+ +LV+ LL+AGA DG  GWRG
Sbjct:    9 EDRVKILGDAADMIFKLMCDRATSEQWTEWLRAPLEHAAGTANRDLVEKLLKAGA-DGSAGWRG 71
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.110e-13
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   25 SRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            S L+G E  IFKLV + AT  QWAEWLRVPLEHAA   + +LV+ LL+AGA DG  GWRG
Sbjct:    8 SLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGA-DGEAGWRG 66
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.750e-12
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 MLTYQERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            M  + ER S L+GL   +FKLV   A++ QWAEWLRVPLEHAA   +  LV+ LL+AGA D   GWRG
Sbjct:    1 MHIFPERTS-LDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGA-DAGAGWRG 66
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BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.540e-12
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 MLTYQERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            M  Y +R   L+G+E  I+KLV   AT  QW EWLRVPLEHAA   +  LV++LL AGA DG  GWRG
Sbjct:    1 MYVYPKRRL-LQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGA-DGSAGWRG 66
[Close]
BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.420e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 MLTYQERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHELVDTLLRAGAGDGIVGWRG 204
            M  Y ER   L+G+E  I+KLV   AT  QW EWLRVPL+HAA   +  LV++LL AGA DG  GW+G
Sbjct:    1 MRVYPERVL-LQGMESEIWKLVSYSATPQQWKEWLRVPLKHAAARGNLNLVNSLLEAGA-DGSAGWKG 66
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104766.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN3_ECTSI1.890e-1660.00Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]
D7G2A3_ECTSI2.910e-1663.08Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FQP1_ECTSI5.930e-1557.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2A9_ECTSI7.100e-1558.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHQ7_ECTSI2.700e-1458.46F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
D7FQP2_ECTSI5.110e-1454.69Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K513_9PHAE2.110e-1363.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ1_9PHAE1.750e-1255.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRS0_ECTSI2.540e-1255.88Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE3.420e-1254.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104766contigF-distichus_contig104766:2..205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D7FPN3
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.362875-CDS-F-distichus_contig104766:1..2051622928969.362875-CDS-F-distichus_contig104766:1..205Fucus distichus monoicousCDSF-distichus_contig104766 2..205 -
1690885085.9159245-CDS-F-distichus_contig104766:1..2051690885085.9159245-CDS-F-distichus_contig104766:1..205Fucus distichus monoicousCDSF-distichus_contig104766 2..205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104766.422.1prot_F-distichus_contig104766.422.1Fucus distichus monoicouspolypeptideF-distichus_contig104766 2..205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104766.422.1

>prot_F-distichus_contig104766.422.1 ID=prot_F-distichus_contig104766.422.1|Name=mRNA_F-distichus_contig104766.422.1|organism=Fucus distichus monoicous|type=polypeptide|length=68bp
MLTYQERASRLEGLEEVIFKLVCRKATQNQWAEWLRVPLEHAAEEADHEL
VDTLLRAGAGDGIVGWRG
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mRNA from alignment at F-distichus_contig104766:2..205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104766.422.1 ID=mRNA_F-distichus_contig104766.422.1|Name=mRNA_F-distichus_contig104766.422.1|organism=Fucus distichus monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at F-distichus_contig104766:2..205- (Fucus distichus monoicous)
ATGCTGACCTACCAAGAGCGGGCCAGCAGACTTGAAGGCTTAGAAGAGGT
CATCTTCAAGCTCGTGTGTCGAAAAGCTACACAAAACCAATGGGCGGAGT
GGCTTCGTGTGCCGCTAGAACACGCTGCAGAGGAGGCCGACCACGAGTTG
GTAGACACGTTACTGAGGGCCGGAGCAGGAGACGGTATCGTAGGCTGGAG
GGGC
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Coding sequence (CDS) from alignment at F-distichus_contig104766:2..205-

>mRNA_F-distichus_contig104766.422.1 ID=mRNA_F-distichus_contig104766.422.1|Name=mRNA_F-distichus_contig104766.422.1|organism=Fucus distichus monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at F-distichus_contig104766:2..205- (Fucus distichus monoicous)
ATGCTGACCTACCAAGAGCGGGCCAGCAGACTTGAAGGCTTAGAAGAGGT
CATCTTCAAGCTCGTGTGTCGAAAAGCTACACAAAACCAATGGGCGGAGT
GGCTTCGTGTGCCGCTAGAACACGCTGCAGAGGAGGCCGACCACGAGTTG
GTAGACACGTTACTGAGGGCCGGAGCAGGAGACGGTATCGTAGGCTGGAG
GGGCATGCTGACCTACCAAGAGCGGGCCAGCAGACTTGAAGGCTTAGAAG
AGGTCATCTTCAAGCTCGTGTGTCGAAAAGCTACACAAAACCAATGGGCG
GAGTGGCTTCGTGTGCCGCTAGAACACGCTGCAGAGGAGGCCGACCACGA
GTTGGTAGACACGTTACTGAGGGCCGGAGCAGGAGACGGTATCGTAGGCT
GGAGGGGC
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