mRNA_F-distichus_contig104687.415.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104687.415.1
Unique NamemRNA_F-distichus_contig104687.415.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: D7FLG8_ECTSI (Transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG8_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.250e-46
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPDVKGD++Y ISTFASK+GVKFTARAA A+LA+NY+SAI +G LSPAG FN+RVMVGGH+ LL  LG ++RRLVPD Q SIK FY RIWDLFYLEY +YPF+
Sbjct:  185 KDLPDVKGDKEYNISTFASKRGVKFTARAASAILAVNYLSAIAEGILSPAGTFNRRVMVGGHSALLAILGLAIRRLVPDDQGSIKRFYLRIWDLFYLEYAMYPFM 289          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A6H5JNV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV9_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.210e-46
Identity = 78/105 (74.29%), Postives = 93/105 (88.57%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPDVKGD++YKISTFASK+GVKFTARAA AVLA+NY+SAI +G+LSPAG FN+RVMVGGH+ LL  LG ++R+LVPD Q SIK FY RIWDLFYLEY +YPF+
Sbjct:  309 KDLPDVKGDKEYKISTFASKRGVKFTARAASAVLAVNYLSAIAEGALSPAGTFNRRVMVGGHSALLAILGLAIRKLVPDDQGSIKRFYLRIWDLFYLEYAMYPFM 413          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A835YU62_9STRA (Tocopherol polyprenyltransferase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU62_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.270e-33
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPDV+GD++Y ISTFA + GV   A AAC VL LNYVSAIV+ +L PA  FNK +M+ GH+   + L  +  +L PDS+ES+KAFY RIWDLFYLEY+LYPFI
Sbjct:  215 KDLPDVEGDKQYNISTFAVRAGVARIANAACIVLGLNYVSAIVEAALVPA--FNKAIMIAGHSAFALYLYRARTKLQPDSKESVKAFYARIWDLFYLEYLLYPFI 317          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: W7TS50_9STRA (Tocopherol polyprenyltransferase-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS50_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.050e-32
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPD +GD+KY + TFA++ GVK  AR A  VL LNY+SAI QG ++P+GAF + VMVGGH +L   L    ++L PDS  SIKAFYK IWDLFYLEY LYPF+
Sbjct:  298 KDLPDTEGDKKYNVRTFATRVGVKNMARGAAGVLFLNYLSAIAQGVVNPSGAFRQWVMVGGHTVLAALLIQRYKKLEPDSLASIKAFYKSIWDLFYLEYALYPFL 402          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A7S2TSF5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TSF5_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 5.040e-30
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   25 DLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            DLPD+KGD+++ + TFAS+ G K  A  AC  L  NYV AI     S  G FN  +MVG HA L + L  + ++L PD Q SIK FY RIWDLFYLEY LYPF+
Sbjct:    1 DLPDIKGDKEFGVKTFASRLGAKKVALMACLTLGANYVHAIGTALFSQPGTFNTPLMVGAHAALALMLARNHKKLDPDDQTSIKRFYARIWDLFYLEYALYPFL 104          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A7S2RLT5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLT5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.300e-29
Identity = 59/105 (56.19%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPD++GDR Y I TFA+K GV   A+ A   L LNYV AI  G LS AG FNK  M+GGH  L + L    R L P S  S+K +YK IWDLFYLEYVLY  I
Sbjct:    4 KDLPDIEGDRAYNIDTFATKVGVPNIAKGATVCLLLNYVHAIGTGVLSTAGTFNKIPMIGGHIALALMLLNHFRSLTPTSIPSVKTYYKHIWDLFYLEYVLYTLI 108          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A7S2UTD4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTD4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.040e-27
Identity = 61/108 (56.48%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   13 AFYQDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            A  +DLPDV+GDRKY I+T   +KGV   A+ A  VL  NY+SAIV G ++PA  FNK VMV GHAL  V L    + L   S  S+K FYK IWDLFY EY LYPFI
Sbjct:  280 AITKDLPDVEGDRKYNINTLTVRKGVPAVAKLATGVLLANYISAIVNGIVAPAQQFNKVVMVSGHALFSVWLIKLYKDLNASSTTSVKKFYKGIWDLFYAEYCLYPFI 387          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A7S2C156_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C156_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.630e-27
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPD++GD+K+ + T +++ GVK  A AA AVL LNY  A+    L+  G +N   M GGHAL  + L    R+  PDS  SIK +YKRIWDLFYLEY++Y FI
Sbjct:  124 KDLPDIEGDKKFAVETLSTRLGVKPIATAATAVLLLNYAGAVATALLAGPGVYNTAFMAGGHALAGLWLALGFRKFQPDSMASIKGYYKRIWDLFYLEYLMYVFI 228          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A6U3TIV9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3TIV9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.010e-27
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPD++GD+K++I T +++ GV   A+ A  +L  NY  A+    L+P G F++  M G H L    L  S R+L P+S +SIKAFYKRIWDLFYLEY LYPFI
Sbjct:  288 KDLPDIEGDKKFEIETLSTRYGVSLIAKVATGLLLANYAGAVATALLAPPGTFHRAFMAGSHILAGTVLAVSARKLDPNSMDSIKAFYKRIWDLFYLEYCLYPFI 392          
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Match: A0A7S2HIJ7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HIJ7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.800e-27
Identity = 57/105 (54.29%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   22 QDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIVQGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWDLFYLEYVLYPFI 336
            +DLPD+ GD+ Y I TFA+K GV   A  A ++L LNY+ AI+ G LS AG +    M+GGHA L   L A  ++L PDS ES+K FYK IWDLFYLEY LY  I
Sbjct:  162 KDLPDIDGDKAYNIETFATKLGVAKIAAGATSLLFLNYIHAILTGILSKAGTYKTIPMLGGHAALACVLIARFKQLKPDSMESVKKFYKHIWDLFYLEYGLYTLI 266          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104687.415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG8_ECTSI2.250e-4673.33Transferase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JNV9_9PHAE5.210e-4674.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YU62_9STRA2.270e-3360.95Tocopherol polyprenyltransferase-like protein n=1 ... [more]
W7TS50_9STRA1.050e-3260.00Tocopherol polyprenyltransferase-like protein n=2 ... [more]
A0A7S2TSF5_9EUKA5.040e-3053.85Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2RLT5_9STRA2.300e-2956.19Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2UTD4_9STRA1.040e-2756.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2C156_9STRA1.630e-2750.48Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U3TIV9_9STRA3.010e-2750.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2HIJ7_9STRA3.800e-2754.29Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104687contigF-distichus_contig104687:1120..1858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog2880.D7FLG8
Preferred nameVTE2-2
KEGG rclassRC01840
KEGG koko:K12501
KEGG ReactionR08782
KEGG Pathwayko00130,map00130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.homogentisate solanyltransferase activity
EggNOG OGs2QUHT@2759,COG0382@1
EC2.5.1.117
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928966.3331547-CDS-F-distichus_contig104687:1119..12891622928966.3331547-CDS-F-distichus_contig104687:1119..1289Fucus distichus monoicousCDSF-distichus_contig104687 1120..1289 -
1690885085.3197434-CDS-F-distichus_contig104687:1119..12891690885085.3197434-CDS-F-distichus_contig104687:1119..1289Fucus distichus monoicousCDSF-distichus_contig104687 1120..1289 -
1622928966.3520534-CDS-F-distichus_contig104687:1689..18581622928966.3520534-CDS-F-distichus_contig104687:1689..1858Fucus distichus monoicousCDSF-distichus_contig104687 1690..1858 -
1690885085.3329175-CDS-F-distichus_contig104687:1689..18581690885085.3329175-CDS-F-distichus_contig104687:1689..1858Fucus distichus monoicousCDSF-distichus_contig104687 1690..1858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104687.415.1prot_F-distichus_contig104687.415.1Fucus distichus monoicouspolypeptideF-distichus_contig104687 1120..1858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104687.415.1

>prot_F-distichus_contig104687.415.1 ID=prot_F-distichus_contig104687.415.1|Name=mRNA_F-distichus_contig104687.415.1|organism=Fucus distichus monoicous|type=polypeptide|length=113bp
VFNFAFYQDLPDVKGDRKYKISTFASKKGVKFTARAACAVLALNYVSAIV
QGSLSPAGAFNKRVMVGGHALLLVGLGASLRRLVPDSQESIKAFYKRIWD
LFYLEYVLYPFI*
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mRNA from alignment at F-distichus_contig104687:1120..1858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104687.415.1 ID=mRNA_F-distichus_contig104687.415.1|Name=mRNA_F-distichus_contig104687.415.1|organism=Fucus distichus monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at F-distichus_contig104687:1120..1858- (Fucus distichus monoicous)
GTGTTTAATTTCGCTTTTTACCAGGACCTCCCCGACGTCAAGGGTGATCG AAAGTACAAAATATCGACCTTCGCTTCAAAGAAGGGCGTCAAGTTCACGG CCAGAGCGGCGTGCGCGGTGCTGGCGCTCAACTACGTATCGGCCATCGTC CAAGGCTCCCTGTCTCCCGGTACGCCGAGACATAGGAGATATGTTTTGTG AGACACAACATCACGCATCATGTGACGTTACAGACGCAGAAGCGATCGGT TTCGCGCAAATATCCCTTAGGCGGGAGGTGGCATGTCGCTCATTCAATTG CTTCGAAACAGACGTAAACTTATCATATTGCGATCGTTATATATAGCGCC GGATGATGCACGTACAGTGGTACAGCGTGCCTGTGCCATGTATTTGTGTA CGTGCAAGTGTAAAGTGTATCTATATGTGTGTTTCCAGGTCTGCGTTTGC CTGATTGAGTCCTTCATCTGACGAAGTTGTTTGTGTCATAGGCTCCCGAC GCTTCCGCCACCGTCACGCCCAACGACTGACCAACCCGATCATTTTCGTT CCCGCATGCTCTCGATCAGCCGGCGCGTTCAACAAGAGGGTCATGGTCGG AGGCCACGCCCTGCTGTTGGTGGGTCTCGGGGCGTCTCTGCGACGTCTTG TGCCGGACTCTCAGGAGAGCATCAAGGCCTTCTACAAGCGAATCTGGGAC CTTTTCTACCTGGAGTACGTCTTGTACCCCTTCATCTGA
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Coding sequence (CDS) from alignment at F-distichus_contig104687:1120..1858-

>mRNA_F-distichus_contig104687.415.1 ID=mRNA_F-distichus_contig104687.415.1|Name=mRNA_F-distichus_contig104687.415.1|organism=Fucus distichus monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at F-distichus_contig104687:1120..1858- (Fucus distichus monoicous)
GTGTTTAATTTCGCTTTTTACCAGGACCTCCCCGACGTCAAGGGTGATCG
AAAGTACAAAATATCGACCTTCGCTTCAAAGAAGGGCGTCAAGTTCACGG
CCAGAGCGGCGTGCGCGGTGCTGGCGCTCAACTACGTATCGGCCATCGTC
CAAGGCTCCCTGTCTCCCGGTGTTTAATTTCGCTTTTTACCAGGACCTCC
CCGACGTCAAGGGTGATCGAAAGTACAAAATATCGACCTTCGCTTCAAAG
AAGGGCGTCAAGTTCACGGCCAGAGCGGCGTGCGCGGTGCTGGCGCTCAA
CTACGTATCGGCCATCGTCCAAGGCTCCCTGTCTCCCGCCGGCGCGTTCA
ACAAGAGGGTCATGGTCGGAGGCCACGCCCTGCTGTTGGTGGGTCTCGGG
GCGTCTCTGCGACGTCTTGTGCCGGACTCTCAGGAGAGCATCAAGGCCTT
CTACAAGCGAATCTGGGACCTTTTCTACCTGGAGTACGTCTTGTACCCCT
TCATCTGACCGGCGCGTTCAACAAGAGGGTCATGGTCGGAGGCCACGCCC
TGCTGTTGGTGGGTCTCGGGGCGTCTCTGCGACGTCTTGTGCCGGACTCT
CAGGAGAGCATCAAGGCCTTCTACAAGCGAATCTGGGACCTTTTCTACCT
GGAGTACGTCTTGTACCCCTTCATCTGA
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