mRNA_F-distichus_contig104611.410.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: UPI0018D881BB (roundabout homolog 1-like isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D881BB) HSP 1 Score: 75.5 bits (184), Expect = 9.560e-13 Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 1
Query: 4 GTYTCVARNTINTDTDSGLLTVVGIKPKITIPSMPADQLLGA---DISWPCEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKDSQVTFDCQHEVDSALLGGLQINWFKDGV 480
G+Y C+A N+I T + V +P T P D+++ A +++ C V EG P P++ W + + + I +DNTL I + G Y+C+AENS G+++L + L V +PV V+F+C+ V + L I W KDG+
Sbjct: 217 GSYVCIATNSIGTRQSPPAILNVHARPSFTRPV--EDRIIAAPGDNVNLLC-VVEGDPTPSITWRRQDADMPQGRFQISDDNTLHIRQVLQEDEGTYICRAENSWGTETLTITLEVNTEPTFTREPVDQTVSVGQMVSFECK--VTGSPLPA--IFWQKDGL 371
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: A0A8B7YRH9_ACAPL (roundabout homolog 2-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YRH9_ACAPL) HSP 1 Score: 74.7 bits (182), Expect = 1.760e-12 Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 1
Query: 4 GTYTCVARNTINTDTDSGLLTVVGIKPKITIPSMPADQLLGA---DISWPCEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKDSQVTFDCQ 420
G+Y C+A N+I T + V +P T P D+++ A +++ C V EG P P+V W + + + I EDNTL I+ + G Y+C+AENS G+++L + L V +PV V+F+C+
Sbjct: 216 GSYVCIATNSIGTRESPPAILNVHARPSFTRPVQ--DRIIAAPGDNVNLHC-VVEGDPIPSVTWRRRDADMPKGRFQIHEDNTLHISQVVQEDEGSYICRAENSWGTEALTITLEVNTEPTFTREPVDQTVSAGHMVSFECK 354
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: UPI001454F3B7 (roundabout homolog 1-like isoform X1 n=3 Tax=Asterias rubens TaxID=7604 RepID=UPI001454F3B7) HSP 1 Score: 74.7 bits (182), Expect = 1.770e-12 Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 1
Query: 4 GTYTCVARNTINTDTDSGLLTVVGIKPKITIPSMPADQLLGADISWPCEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKDSQVTFDCQ 420
G+Y C+A NTI T + V +P T P+ A G + C V EG P PTV W + + + I EDN+L + + + G+Y+C+AEN G++++ V L+V ++P+ V+F+C+
Sbjct: 192 GSYVCIATNTIGTRQSPPAILNVHARPTFTRPAEDAIAAPGDTVDLHC-VVEGDPIPTVTWSRMDGDLPQGRFQIGEDNSLHLRHVIQDDEGIYICRAENGWGAETMMVTLDVNTEPTFTTEPLDQTVSIGQVVSFECK 329
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: A0A812F026_SEPPH (NRCAM n=3 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812F026_SEPPH) HSP 1 Score: 71.2 bits (173), Expect = 2.760e-11 Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 145 CEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKDSQVTFDCQHEVDSALLGGLQINWFKDGVNLDL 492
CE A+GKP P + W++ + + + I L I++ SG Y C+A N G++S EL VR ++IV P ++ F C DS L+INW+KDGV +DL
Sbjct: 473 CE-ADGKPTPVISWFRRDQLIKSKRHEILPSGHLRISDVQPTDSGEYTCRARNRFGTNSSTGELAVRTKTMIVEAPEDMVVIAGKIALFTCHATTDSFEFKNLEINWYKDGVLIDL 587
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: UPI0010696446 (hemicentin-1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010696446) HSP 1 Score: 70.1 bits (170), Expect = 6.580e-11 Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 1
Query: 1 AGTYTCVARNTINTDTDSGLLTVVGIKPKITIP-SMPADQLLGADISWPCEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVS 366
AGTY CVA N+I +D+ S L +V +KP +T+ S P G + C P TV WYKD + + +E TL+I+N K SG+Y C+A+N+ +D ++E+ V I +
Sbjct: 454 AGTYVCVANNSIGSDSKSATL-IVTVKPTVTVSCSSPVIVKEGDHFTCVCTEQGSNPPATVAWYKDGKQISDQR---EERQTLSISNIEKKDSGMYRCEAKNTVSNDKKSIEIIVHYKPTITA 572
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: UPI0015AA6117 (basement membrane-specific heparan sulfate proteoglycan core protein-like n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AA6117) HSP 1 Score: 69.7 bits (169), Expect = 7.160e-11 Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1
Query: 4 GTYTCVARNTINTDTDSGLLTVVGIKPKI-TIPSMPADQLLGADISWPCEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKD------SQVTFDCQ 420
GTY CV N S LTV PK+ P PA +G I+ C A G+P PTV W+++ + + S + T+ + A +G+YVCKAENSEG+ L V++ V S + P + + D VT CQ
Sbjct: 102 GTYRCVGTNAHGKSQSSASLTV-HYSPKVQATPKSPARVRIGETINLECH-ATGRPRPTVTWHREGGAKTGTSSSTEAKATVQVQAARSEDAGVYVCKAENSEGTVELKVQVTVEGGSQAPTPPRASILQADMVKVEGDSVTLQCQ 245
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: A0A7M7NDJ2_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NDJ2_STRPU) HSP 1 Score: 69.7 bits (169), Expect = 9.500e-11 Identity = 45/141 (31.91%), Postives = 70/141 (49.65%), Query Frame = 1
Query: 4 GTYTCVARNTINTDTDSGLLTVVGIKPKITIPSMPADQLL--GADISWPCEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKDSQVTFDCQ 420
G Y CVA N+ + ++ +P T +P D L G I+ PC VAEG+PAPT+ W K + ++ L ++ +D++L I+NA SG Y+C A+N+ G S+ + V + + PV F CQ
Sbjct: 58 GNYVCVATNSEGAKRSAAGRLIINSRPAFT--EVPFDTLAIPGETITLPC-VAEGEPAPTIRWVKQDGTLPLNRNTMLQDSSLRISNAESSDSGTYICTAQNTWGDKSVEAIVTVSSAPMFTRVPVDRTVVVGQDAFFLCQ 195
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: UPI001863A970 (basement membrane-specific heparan sulfate proteoglycan core protein-like n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001863A970) HSP 1 Score: 67.0 bits (162), Expect = 6.100e-10 Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1
Query: 4 GTYTCVARNTINTDTDSGLLTVVGIKPKITI-PSMPADQLLGADISWPCEVAEGKPAPTVLWYKDNLSVDLEAVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKD------SQVTFDCQ 420
GTY CVA N S LTV PKI I PS P G I C A G+P P+V W++ ++ S + + ++ A +G+YVCKA+NSEG+ VE+ V + I + P + + D + VT CQ
Sbjct: 88 GTYRCVATNAFGKAHGSASLTVKQ-SPKIDITPSGPVKVQAGEPIKLECH-ATGRPRPSVTWHRQGTGETGQSSSTEAKAVVQVSAARSEDAGVYVCKAQNSEGTAETKVEVKVEGGAQISTMPQASVLQTDMVAVEGATVTLHCQ 231
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: UPI0019399492 (hemicentin-1-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI0019399492) HSP 1 Score: 66.2 bits (160), Expect = 1.590e-9 Identity = 44/161 (27.33%), Postives = 71/161 (44.10%), Query Frame = 1
Query: 4 GTYTCVARNTINTDTDSGLLTVVG-IKPKITIPSMPADQLLGADISWPCEVAEGKPAPTVLWYKDNLSVDLEA-VSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKDSQVTFDCQHEVDSALLGGLQINWFKDGV 480
G YTC A N D S + + G +KP IT+ ++G I+ PC + G P P+ W +D+ D +S+ ++ ++ IT A +G YVC A+N G S L+V I + ++ +T C+ + + W K GV
Sbjct: 887 GLYTCSAANQFGGDAKSAEVDITGLVKPWITLTEERPHVIIGQSIALPCRITSGNPTPSRQWRRDSRVFDPTGRISVSQEGSVVITQAQSSDAGEYVCIAKNVAGEHSTNTMLDVWVPPSISTPETDYTTIEERSITLRCETSGNPVPT----VQWTKAGV 1043
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Match: UPI000E459B61 (hemicentin-1 n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=UPI000E459B61) HSP 1 Score: 65.1 bits (157), Expect = 4.000e-9 Identity = 44/162 (27.16%), Postives = 81/162 (50.00%), Query Frame = 1
Query: 1 AGTYTCVARNTINTDTDSGLLTVVGIKPKITIPSMPADQL--LGADISWPCEVAEGKPAPTVLWYKDNLSVDLE-AVSIDEDNTLTITNANKGHSGLYVCKAENSEGSDSLAVELNVRNHSVIVSDPVQVLFEKDSQVTFDCQHEVDSALLGGLQINWFKDG 477
AGTYTCVA N++ T G + V +P + + ++ + LG + CEV G P PT+ W K+ ++V++ + + ++ +L I +G Y+C A N G ++V L ++ I +PV+ + + + V +C+ E + + I W + G
Sbjct: 4302 AGTYTCVAENSVGTIKSLGFVYVK--EPPVIDGDLRSNHIEPLGGNAILNCEV-RGDPLPTIQWSKNGINVEISNRIRVLDNGSLAIYGTVSEDAGNYMCVATNDAGVVEMSVTLTLQRSPTITVEPVEPVVDAGNTVILNCKAEGEPTPM----IEWSRQG 4456 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104611.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig104611.410.1 >prot_F-distichus_contig104611.410.1 ID=prot_F-distichus_contig104611.410.1|Name=mRNA_F-distichus_contig104611.410.1|organism=Fucus distichus monoicous|type=polypeptide|length=169bp AGTYTCVARNTINTDTDSGLLTVVGIKPKITIPSMPADQLLGADISWPCEback to top mRNA from alignment at F-distichus_contig104611:1212..1718- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig104611.410.1 ID=mRNA_F-distichus_contig104611.410.1|Name=mRNA_F-distichus_contig104611.410.1|organism=Fucus distichus monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at F-distichus_contig104611:1212..1718- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig104611:1212..1718- >mRNA_F-distichus_contig104611.410.1 ID=mRNA_F-distichus_contig104611.410.1|Name=mRNA_F-distichus_contig104611.410.1|organism=Fucus distichus monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at F-distichus_contig104611:1212..1718- (Fucus distichus monoicous)back to top |