mRNA_F-distichus_contig104601.409.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104601.409.1
Unique NamemRNA_F-distichus_contig104601.409.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104601.409.1 vs. uniprot
Match: D7G3N1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N1_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.470e-36
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 PAPTPTTNLFELVYSCREGGEDGPEI--TSKEACG-ISSVCFDASTTPETSEVTYQIAFDFTTDPRLAHDVMVEVKLFFDYMEDNETLYASVASNPVRCELNETCHRGCTDDERLFTVTLEDEMGDGWNAGAINLLNFF 408
            PAPT    LFELVYSCR+ G DG E+  TS E CG ++  C DA T P  SEVTYQ+AF+F      ++DV V+VKL+F+Y++  +  +A  + N VRC L+ETCHR C   E  F   L D MGDGWNAG INL + F
Sbjct:   68 PAPT-GKQLFELVYSCRKHGPDGEEVVLTSLEECGMVAEPCVDAGTNPGISEVTYQVAFEFEAQ---SYDVSVDVKLYFNYLKAGDKFHAKRSENAVRCLLSETCHRRCESGEWGFPAELRDSMGDGWNAGGINLFDHF 202
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BLAST of mRNA_F-distichus_contig104601.409.1 vs. uniprot
Match: A0A6H5KHK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK1_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.670e-33
Identity = 69/131 (52.67%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   25 LFELVYSCREGGEDGPEI--TSKEACG-ISSVCFDASTTPETSEVTYQIAFDFTTDPRLAHDVMVEVKLFFDYMEDNETLYASVASNPVRCELNETCHRGCTDDERLFTVTLEDEMGDGWNAGAINLLNFF 408
            LFELVYSCR+ G DG E+  TS E CG ++  C DA T P  SEVTYQ+AF+F   P   +DV V+VKLFF+Y++  +  +A  + N VRC L+ETCHR  +  E  F   L D MGDGWNAG INL + F
Sbjct:   86 LFELVYSCRKHGPDGEEVVLTSLEECGMVAEPCVDAGTNPGISEVTYQVAFEFEAQP---YDVSVDVKLFFNYLKAGDKFHAKRSENAVRCLLSETCHRRRSG-EWSFPAELRDSMGDGWNAGGINLFDHF 212
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104601.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3N1_ECTSI2.470e-3651.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHK1_9PHAE3.670e-3352.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104601contigF-distichus_contig104601:5..1611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104601.409.1prot_F-distichus_contig104601.409.1Fucus distichus monoicouspolypeptideF-distichus_contig104601 5..1611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.6522338-CDS-F-distichus_contig104601:4..981622928965.6522338-CDS-F-distichus_contig104601:4..98Fucus distichus monoicousCDSF-distichus_contig104601 5..98 -
1690885085.0436635-CDS-F-distichus_contig104601:4..981690885085.0436635-CDS-F-distichus_contig104601:4..98Fucus distichus monoicousCDSF-distichus_contig104601 5..98 -
1622928965.665834-CDS-F-distichus_contig104601:1042..11971622928965.665834-CDS-F-distichus_contig104601:1042..1197Fucus distichus monoicousCDSF-distichus_contig104601 1043..1197 -
1690885085.0538704-CDS-F-distichus_contig104601:1042..11971690885085.0538704-CDS-F-distichus_contig104601:1042..1197Fucus distichus monoicousCDSF-distichus_contig104601 1043..1197 -
1622928965.6796792-CDS-F-distichus_contig104601:1452..16111622928965.6796792-CDS-F-distichus_contig104601:1452..1611Fucus distichus monoicousCDSF-distichus_contig104601 1453..1611 -
1690885085.0629025-CDS-F-distichus_contig104601:1452..16111690885085.0629025-CDS-F-distichus_contig104601:1452..1611Fucus distichus monoicousCDSF-distichus_contig104601 1453..1611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104601.409.1

>prot_F-distichus_contig104601.409.1 ID=prot_F-distichus_contig104601.409.1|Name=mRNA_F-distichus_contig104601.409.1|organism=Fucus distichus monoicous|type=polypeptide|length=136bp
PAPTPTTNLFELVYSCREGGEDGPEITSKEACGISSVCFDASTTPETSEV
TYQIAFDFTTDPRLAHDVMVEVKLFFDYMEDNETLYASVASNPVRCELNE
TCHRGCTDDERLFTVTLEDEMGDGWNAGAINLLNFF
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mRNA from alignment at F-distichus_contig104601:5..1611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104601.409.1 ID=mRNA_F-distichus_contig104601.409.1|Name=mRNA_F-distichus_contig104601.409.1|organism=Fucus distichus monoicous|type=mRNA|length=1607bp|location=Sequence derived from alignment at F-distichus_contig104601:5..1611- (Fucus distichus monoicous)
CCAGCACCAACACCAACGACTAACCTTTTCGAGCTGGTGTACAGCTGCCG
AGAGGGTGGCGAAGACGGACCTGAAATCACCTCCAAGGAGGCATGCGGTA
TATCATCCGTTTGCTTCGATGCCAGCACCACCCCAGAGACATCCGAAGTC
ACGTATCAGGTGAGTCAACTCTAACGATCACACCCCAAAGAGTAGAATAG
TTGTAATATCTTGTAATACGTCTTGGCTTTTTAAGAGAGGGTGTTCATCA
CCTTGCCAGCAGTGTGCCCAAGCCGAGTTTTCGAGAAGATTGCACTCTAC
CATCATCATGAGAAAACGTTTATGAACACAAGCATCCTCTATCGATTTCT
CGTCCCTCGCGACCCTCGACTTCTGCCGACGCTCGCCCCATCGATCTCTG
ATGAACCGGCACAGATTGCCTTCGATTTCACGACTGACCCACGCCTCGCT
CATGACGTGATGGTGGAGGTGAAACTTTTCTTTGATTACATGGAGGACAA
CGAAACTCTCTACGCCTCCGTGGCCAGCAATCCTGTCCGCTGCGAGCTGA
ACGAAACTTGTCACCGCGGGTGAGACGAGACGAGGGGTTGGACGAGAGGT
TAGGCGTTATTATTTCCTCCCAAGTGTGACGAATACTGACATCTTCGTTC
TTCATCTCTGTATCTTAAGAGTTACGTAAACGAGCCAAAACGTTCCACAC
TCAAAAGCATTTTAACGGTACGATAGCTTTTCCTTGCGGAGGCCAGTCCT
CCGACTCGACATCTGGTGGGCATGGAAGCCGTGCTGCATGTGCAGCAGCA
AACGAAGGGAAGCCTAATCTCTCACTATAATAGTAGGCGATGTAGTTCAC
CTCCACAAGCCACTTGATGACCTTCACAGCCTCGTCGCCCAAGTGATCTA
GTCTAGTGGTTAACCTCGCATGTCATATCCACTAGTAGTGCCGATATCGT
AGTTCGATTGTTGGCAGAGCAGGCTTTTTGTTCTGGCTTCCCGTATTGTA
GTAATAGCGGAAAGCGTGACAACGTTGGTAAGCAAAATTCAACCATTGGT
TGACGAATTGTAAGAGTGCTGAACTTGCATCGCGATAAAAAAGTTTGAAA
GGCGAGAACCGGGGAGAGATGGGAAGATCCTTCGTGGCCACAGGCAGGAC
GGCATCGTTACAGTAGGTAGGGTTGGTGACCTAGCACGTTGAGGACCATC
GGCCATAAAAGTGAGATTTAAAAAAATAAAAATGAGCAAATACACGCCAC
TTGTTGACCTTAACATACCACCACTTGTCGCCTATTCTGTGCTATTGATA
TTAATAACTAATGGGAGCAAAAGCAAGTTGTTTTATTTGACACCGTCTAT
CTATAGTCTAGAGCGCTATAATAGTGCCTCCTGTCTGGGATTGGACCGGA
ATATTTGCACAAAGGGAACTTTTCCATCCATTCACGCCCCCGAAATCTAT
ACACCCTTCCCCCTATAACGCCCTCAAGATCTAAACCCCTTGTTTCTCCG
CCGTCGCTCCCAGCTGCACAGATGACGAGCGATTATTCACAGTCACGCTA
GAGGACGAGATGGGTGACGGCTGGAACGCTGGGGCCATCAATCTTCTTAA
CTTCTTT
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Coding sequence (CDS) from alignment at F-distichus_contig104601:5..1611-

>mRNA_F-distichus_contig104601.409.1 ID=mRNA_F-distichus_contig104601.409.1|Name=mRNA_F-distichus_contig104601.409.1|organism=Fucus distichus monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at F-distichus_contig104601:5..1611- (Fucus distichus monoicous)
CCAGCACCAACACCAACGACTAACCTTTTCGAGCTGGTGTACAGCTGCCG
AGAGGGTGGCGAAGACGGACCTGAAATCACCTCCAAGGAGGCATGCGGTA
TATCATCCGTTTGCTTCGATGCCAGCACCACCCCAGAGACATCCGAAGTC
ACGTATCAGCCAGCACCAACACCAACGACTAACCTTTTCGAGCTGGTGTA
CAGCTGCCGAGAGGGTGGCGAAGACGGACCTGAAATCACCTCCAAGGAGG
CATGCGGTATATCATCCGTTTGCTTCGATGCCAGCACCACCCCAGAGACA
TCCGAAGTCACGTATCAGATTGCCTTCGATTTCACGACTGACCCACGCCT
CGCTCATGACGTGATGGTGGAGGTGAAACTTTTCTTTGATTACATGGAGG
ACAACGAAACTCTCTACGCCTCCGTGGCCAGCAATCCTGTCCGCTGCGAG
CTGAACGAAACTTGTCACCGCGGATTGCCTTCGATTTCACGACTGACCCA
CGCCTCGCTCATGACGTGATGGTGGAGGTGAAACTTTTCTTTGATTACAT
GGAGGACAACGAAACTCTCTACGCCTCCGTGGCCAGCAATCCTGTCCGCT
GCGAGCTGAACGAAACTTGTCACCGCGGCTGCACAGATGACGAGCGATTA
TTCACAGTCACGCTAGAGGACGAGATGGGTGACGGCTGGAACGCTGGGGC
CATCAATCTTCTTAACTTCTTTCTGCACAGATGACGAGCGATTATTCACA
GTCACGCTAGAGGACGAGATGGGTGACGGCTGGAACGCTGGGGCCATCAA
TCTTCTTAACTTCTTT
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