mRNA_F-distichus_contig1046.407.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1046.407.1
Unique NamemRNA_F-distichus_contig1046.407.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig1046.407.1 vs. uniprot
Match: D7FSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD6_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.010e-42
Identity = 95/195 (48.72%), Postives = 125/195 (64.10%), Query Frame = 1 
Query:   49 RRLSADTPAWKRTSVQVESPVELSVGDVVKARDTATSNGMWFEGVLTAIHDEFTFTVELTCNDQSED--MDCITVGINDLVRVMPWFCIEVDDIVEFQTNESRGWFRGVVVDIDSDKLVYDVELDS--DSTHD--EAHETVEVMGGGEWREEWRSDEGDGKEEAAGRSGVIYRVADDRIRKICSGRQAVAKRWKR 615
            +R SA  P W++ + +VE+P EL VGD+V+ RD    NGMWFEGVLTAIHDE TF VEL+ +D+ E+  +  ITVGI+D+VRVMPWFCIEV D+VE Q   +  W RG VV+I  ++ +YDV L+S  D   D  E +   +V GGG   E         K++       +YRV +  IRK+ SGRQA AKRWK+
Sbjct:  194 KRGSAVVPNWRKAAEEVETPNELCVGDIVRVRDKEL-NGMWFEGVLTAIHDESTFEVELSGDDEDEEGCVQHITVGIDDVVRVMPWFCIEVGDMVECQLEGTMIWLRGTVVNIHLEQALYDVALESCEDGQADGRETYGENDVAGGGGDCE---------KKQGEASPNTMYRVPESSIRKVVSGRQAAAKRWKK 378
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BLAST of mRNA_F-distichus_contig1046.407.1 vs. uniprot
Match: A0A6H5JS13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS13_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.330e-38
Identity = 91/203 (44.83%), Postives = 122/203 (60.10%), Query Frame = 1 
Query:   49 RRLSADTPAWKRTSVQVESPVELSVGDVVKARDTATS--NGMWFEGVLTAIHDEFTFTVELTCNDQSED--MDCITVGINDLVRVMPWFCIE---VDDIVEFQTNESRGWFRGVVVDIDSDKLVYDVELDSDST--HDEAHETV---EVMGGGEWREEWRSDEGDGKEEAAGRSGVIYRVADDRIRKICSGRQAVAKRWKRSV 621
            +R SA  P W++ + +VE+P EL VGD+V+ R       NGMWFEGVL AIHDE TF VEL  +D+ E+  +  ITVGI+D+VRVMPWFCIE   V D+VE Q   +  W RG VV++  ++ VYDV L+ +     D+   T     V GGGE  +         K++       +YRV +  IRK+ SGRQA AKRWK+ +
Sbjct:  209 KRGSAVVPNWRKAAEEVETPNELCVGDIVRVRQARDKELNGMWFEGVLAAIHDESTFEVELGGDDEDEEGGVQYITVGIDDVVRVMPWFCIEASLVGDMVECQLEGTMMWLRGTVVNVHLEQAVYDVALEPECEDGQDDGLATFGENAVAGGGEDCD---------KKQGEASPNTMYRVPESSIRKVVSGRQAAAKRWKKVI 402
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1046.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSD6_ECTSI1.010e-4248.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS13_9PHAE2.330e-3844.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1046contigF-distichus_contig1046:6655..9764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1087
Cds size645
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1046.407.1prot_F-distichus_contig1046.407.1Fucus distichus monoicouspolypeptideF-distichus_contig1046 7095..9764 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.4142132-UTR-F-distichus_contig1046:6654..70941622928965.4142132-UTR-F-distichus_contig1046:6654..7094Fucus distichus monoicousUTRF-distichus_contig1046 6655..7094 -
1690885084.915703-UTR-F-distichus_contig1046:6654..70941690885084.915703-UTR-F-distichus_contig1046:6654..7094Fucus distichus monoicousUTRF-distichus_contig1046 6655..7094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.4325447-CDS-F-distichus_contig1046:7094..73101622928965.4325447-CDS-F-distichus_contig1046:7094..7310Fucus distichus monoicousCDSF-distichus_contig1046 7095..7310 -
1690885084.9264493-CDS-F-distichus_contig1046:7094..73101690885084.9264493-CDS-F-distichus_contig1046:7094..7310Fucus distichus monoicousCDSF-distichus_contig1046 7095..7310 -
1622928965.4488847-CDS-F-distichus_contig1046:7654..77711622928965.4488847-CDS-F-distichus_contig1046:7654..7771Fucus distichus monoicousCDSF-distichus_contig1046 7655..7771 -
1690885084.9343128-CDS-F-distichus_contig1046:7654..77711690885084.9343128-CDS-F-distichus_contig1046:7654..7771Fucus distichus monoicousCDSF-distichus_contig1046 7655..7771 -
1622928965.4663548-CDS-F-distichus_contig1046:8099..81951622928965.4663548-CDS-F-distichus_contig1046:8099..8195Fucus distichus monoicousCDSF-distichus_contig1046 8100..8195 -
1690885084.9446797-CDS-F-distichus_contig1046:8099..81951690885084.9446797-CDS-F-distichus_contig1046:8099..8195Fucus distichus monoicousCDSF-distichus_contig1046 8100..8195 -
1622928965.4793558-CDS-F-distichus_contig1046:8356..84291622928965.4793558-CDS-F-distichus_contig1046:8356..8429Fucus distichus monoicousCDSF-distichus_contig1046 8357..8429 -
1690885084.9547088-CDS-F-distichus_contig1046:8356..84291690885084.9547088-CDS-F-distichus_contig1046:8356..8429Fucus distichus monoicousCDSF-distichus_contig1046 8357..8429 -
1622928965.4924173-CDS-F-distichus_contig1046:9621..97641622928965.4924173-CDS-F-distichus_contig1046:9621..9764Fucus distichus monoicousCDSF-distichus_contig1046 9622..9764 -
1690885084.964443-CDS-F-distichus_contig1046:9621..97641690885084.964443-CDS-F-distichus_contig1046:9621..9764Fucus distichus monoicousCDSF-distichus_contig1046 9622..9764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1046.407.1

>prot_F-distichus_contig1046.407.1 ID=prot_F-distichus_contig1046.407.1|Name=mRNA_F-distichus_contig1046.407.1|organism=Fucus distichus monoicous|type=polypeptide|length=215bp
NVAGETATVGVLQGPSRRLSADTPAWKRTSVQVESPVELSVGDVVKARDT
ATSNGMWFEGVLTAIHDEFTFTVELTCNDQSEDMDCITVGINDLVRVMPW
FCIEVDDIVEFQTNESRGWFRGVVVDIDSDKLVYDVELDSDSTHDEAHET
VEVMGGGEWREEWRSDEGDGKEEAAGRSGVIYRVADDRIRKICSGRQAVA
KRWKRSVQDTRTSE*
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mRNA from alignment at F-distichus_contig1046:6655..9764-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1046.407.1 ID=mRNA_F-distichus_contig1046.407.1|Name=mRNA_F-distichus_contig1046.407.1|organism=Fucus distichus monoicous|type=mRNA|length=3110bp|location=Sequence derived from alignment at F-distichus_contig1046:6655..9764- (Fucus distichus monoicous)
AACGTGGCGGGGGAAACGGCGACGGTAGGAGTTCTGCAGGGACCGAGCCG
ACGCTTATCGGCGGACACCCCGGCTTGGAAGCGGACATCAGTCCAGGTGG
AAAGCCCTGTCGAACTATCCGTCGGTGACGTGGTGAAGGCAAGGTAGGGC
ACAGGCGCTCGCGGTTGATTCGCGTCCAGTACTGCATCTATCCAGAATTT
TTGCGTGATCTCCGGGGGCCAAGTTTCAGTTAGTTAGCCATTCGGAAATC
CCCCCCGTTTCCCTCTTCTTCCCGTCTTAGGGCACCGACGCGATCCCGTC
TTTCCGTTCATGCTTCTGCCGAGACATTTTCTTCCCAGAATATTGTTTTT
TTTTCCCTGTCGGAGCGTGGAGTTAAAAAATAAAGTGGTTGATGAAGCTG
ATATTATCACCTCAGCTCTACTCACAACGTCGGTAGCTTTTTGGCAGCTG
CAGGTGATGGTTTATAGTGGTAATCGAGGTGGGATAAGTCCTCTGCAGCA
CCTCTCCCTGCTCATGCAACGACCACGCTTACTTGTACCAGTATGCTTCT
ATATCCATTTCTGCATGTGCCTATAAACTGGTTATAATCCCCAGACCATA
GTCTAACCCTGTTTGGAGTCCCCGGCGTTTGGGAGACCCCAGCCATTACC
TTGTACCAAGTGCCCACCAGAAAATGCTGGAATACACTTTGAATATAAGT
ATCTCCTAAAGGAAAAATCTCGTGGGTATCTGCTTCCAGTGGGCAATCAA
CTTTACTCTGTCACATTTAGACATCGCCTTTGCGCCATACGTCGGTACAC
TGCTAATGGTAATTTTTGCTGCAGCATAGCTCGTACAAACAAACATCACA
ACATAGCACTCTTCATGAGATACCCTGTACACCTTAACTACAACTGCCCG
AACCTTCGATTCCTGTTTACAAACTAGTATTATTCTAGATGCAAACTTAT
TTCAGCGTTCTAGATGCAAATTTATTTCAGCGTCAACGCGTATTAGTAAT
ACCTTTTAGTTCCGAGTATTCCATCTCATTTCCTTTTGTTCGCACCCAGG
AGTTTTCCCTCTGTGAAGCTATGCTTATGCTGGCCTTTGGGCAGAAATAA
CAATTTAGAGGGAACTAGTCGTGACCAAATAAGGCGTCATTGTGGCGCGT
AATTTTGATTATGTTTCCTGTTTCATCCCCGTCTATGAAGTACAAGTATA
TACTTATACTTAGTGTGACTCCTTCCGTCGCCGAACATGCCTAAATATCA
TATTCTTCTCTCCTGAACTTATCTACAACCTCTTTGATCCCTGCCTTGAT
TACGTGAACCTTCACTGGGGATGTTTCGTGAGTAGGGATACCGCCACCTC
GAATGGGATGTGGTTCGAAGGGGTTTTAACTGCCATTCACGACGAGTTTA
CCTTCACGGTGGGTTTCTCGGTACCCGCCTGTATATTAATAATCTGCCAG
ACTCTCACGTCAAGGTCTCCAGAAGAAATGAGCCCAAATGAATGTTGCCC
GTCGCATAGAACGTCCCCCCGGTTTCTAGCTGTGGCACCCCTCGCTTTTC
CCTCATGGCGATCCGTCAGGTGGAGCTGACATGTAACGACCAAAGCGAAG
ACATGGACTGCATCACGGTTGGAATCAACGACCTCGTGCGCGTCATGCCA
TGGTTTTGTATAGAGGTGCGTGCTTCTCGATTCTGAGTGCCCCGGCTACA
CAATAGGGCAACGTATTCATGTGCCACGCGGAGAGGTGGACTTGTGAGGT
GACTCAAGCACATCCGGTAGAAAGTCAACATAAACATTCCTTGTCGACGA
TACGGGTGTGTTTGGGAAGGGCAACATGGACATTCGAGTGCATATTGTTT
CGTTCTGTCTCACACCGCGACCGCGCGCATCACACGCCTTCTTAGGAAGG
GTGCCGGACCGCACCAAAGTGTGCATTTTTGCTGGAATATATGTCATTAC
TAAAACGATGTGTTGCACGAGTGCCTCGATCGAAATGCACCAGGTGGACG
ATATCGTGGAATTTCAGACAAACGAGTCGAGAGGATGGTTCCGCGGCGTT
GTGGTAGACATCGACTCGGACAAGCTTGTTTACGATGTCGAGCTCGACTC
TGATTCAACGGTGAGTGCGTTCCAAAACAATACATCTGAAAGGATTTGCT
ACTTTAAAATAACGATAAAAGCCAGCCAATTTATTTTCCAGACTCATGCG
ATTCGTTGAATAGTTTACTTCCAGCAATTAACACGTGTCGCAAGGCCACG
TGCTTGCTGAGGGGTACGGGCTTTCGTGTGCGGCATACTCGAAATTACGT
GGTTTGTTCTGTAGCATTTTTCAATAGCCAGATTCTCGAAGTCGGGAAAC
ATCATTTCCTAGCGTTCGTGTACACTAAAGAGGGGCAATAATGCGTCCCG
TTTTTTTTAATCTTCAAACCCCAAATTCTCGCCCCCGAACCGATGCGATG
CAAGCATGATGAGGCCCACGAGACCGTGGAAGTCATGGGAGGAGGGGAGT
GGAGGGAGGAATGGCGTAGCGATGAAGGCGACGGGAAAGAGGAAGCAGCG
GGTAGGTCCGGCGTTATTTACCGAGTCGCGGACGACAGGATCAGAAAGAT
TTGCAGTGGCCGACAGGCGGTCGCGAAGCGATGGAAAAGAAGTGTTCAAG
ACACCCGTACCTCAGAATGAGAGCATCTCCTTCGAAGGGGCAGCTAAACA
ATCGAATAATGGAGAGTTTTCAACTCTCCGACAAAAGGCGTCTTTCGAAG
TGCGCATGCGTTCACGCTCGCGTGACCTTAGTTATAGTTCTAGGGATACA
CTTGTGTGGATATCTACTTTGAGGGCAGTGACGTCCTGTTGCGCTTGGTT
TTGGTTGGCATATAAGCCATACCCTCCCCTTCTTTCACCACTTGTTCATT
ACTCTGACTGTCCTCTCTCTTCTTTCCTGAGGTGAACCAGGGAAAATTCA
CACTCAACGATCACTTTTGCAAACATCGGATCCATCGGTTTTGCTTGCCG
TGAGTTTTAGTTGTATTACGAAAGAAGGGTGTACCTGGGAAGTTGACCCG
GGCGGTTCATCTAGTGAAGCCCCACAGTGGTGGTACCCAAGAGACATGGA
AATGTAATTG
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Coding sequence (CDS) from alignment at F-distichus_contig1046:6655..9764-

>mRNA_F-distichus_contig1046.407.1 ID=mRNA_F-distichus_contig1046.407.1|Name=mRNA_F-distichus_contig1046.407.1|organism=Fucus distichus monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at F-distichus_contig1046:6655..9764- (Fucus distichus monoicous)
AACGTGGCGGGGGAAACGGCGACGGTAGGAGTTCTGCAGGGACCGAGCCG
ACGCTTATCGGCGGACACCCCGGCTTGGAAGCGGACATCAGTCCAGGTGG
AAAGCCCTGTCGAACTATCCGTCGGTGACGTGGTGAAGGCAAGAACGTGG
CGGGGGAAACGGCGACGGTAGGAGTTCTGCAGGGACCGAGCCGACGCTTA
TCGGCGGACACCCCGGCTTGGAAGCGGACATCAGTCCAGGTGGAAAGCCC
TGTCGAACTATCCGTCGGTGACGTGGTGAAGGCAAGGGATACCGCCACCT
CGAATGGGATGTGGTTCGAAGGGGTTTTAACTGCCATTCACGACGAGTTT
ACCTTCACGGGATACCGCCACCTCGAATGGGATGTGGTTCGAAGGGGTTT
TAACTGCCATTCACGACGAGTTTACCTTCACGGTGGAGCTGACATGTAAC
GACCAAAGCGAAGACATGGACTGCATCACGGTTGGAATCAACGACCTCGT
GCGCGTCATGCCATGGTTTTGTATAGAGGTGGAGCTGACATGTAACGACC
AAAGCGAAGACATGGACTGCATCACGGTTGGAATCAACGACCTCGTGCGC
GTCATGCCATGGTTTTGTATAGAGGTGGACGATATCGTGGAATTTCAGAC
AAACGAGTCGAGAGGATGGTTCCGCGGCGTTGTGGTAGACATCGACTCGG
ACAAGCTTGTTTACGATGTCGAGCTCGACTCTGATTCAACGGTGGACGAT
ATCGTGGAATTTCAGACAAACGAGTCGAGAGGATGGTTCCGCGGCGTTGT
GGTAGACATCGACTCGGACAAGCTTGTTTACGATGTCGAGCTCGACTCTG
ATTCAACGCATGATGAGGCCCACGAGACCGTGGAAGTCATGGGAGGAGGG
GAGTGGAGGGAGGAATGGCGTAGCGATGAAGGCGACGGGAAAGAGGAAGC
AGCGGGTAGGTCCGGCGTTATTTACCGAGTCGCGGACGACAGGATCAGAA
AGATTTGCAGTGGCCGACAGGCGGTCGCGAAGCGATGGAAAAGAAGTGTT
CAAGACACCCGTACCTCAGAATGACATGATGAGGCCCACGAGACCGTGGA
AGTCATGGGAGGAGGGGAGTGGAGGGAGGAATGGCGTAGCGATGAAGGCG
ACGGGAAAGAGGAAGCAGCGGGTAGGTCCGGCGTTATTTACCGAGTCGCG
GACGACAGGATCAGAAAGATTTGCAGTGGCCGACAGGCGGTCGCGAAGCG
ATGGAAAAGAAGTGTTCAAGACACCCGTACCTCAGAATGA
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