mRNA_F-distichus_contig104560.405.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104560.405.1
Unique NamemRNA_F-distichus_contig104560.405.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: D7G912_ECTSI (Serine/threonine-protein phosphatase 2A activator n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G912_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 3.900e-38
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 MTFRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQ--QTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            MTFRVPVRAIRT+ DLNHF+ S TY ELM FIRLCNDAVMGVR SSLQ    D   ++V RIV ML+QM +WVDDIPPIDEPMRFGNKAFR
Sbjct:    1 MTFRVPVRAIRTVTDLNHFKQSPTYKELMTFIRLCNDAVMGVRASSLQLDTPDTAMDTVSRIVRMLRQMGSWVDDIPPIDEPMRFGNKAFR 91          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: A0A7S3Y2V7_HETAK (Serine/threonine-protein phosphatase 2A activator n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2V7_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.330e-22
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    7 FRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            F++P RAI  + DL HF  S+TYSELM FIR+CN+ V G+++S +Q+    SE +G ++G+L  +  WV + PP+ +PMRFGNKAFR
Sbjct:   88 FQIPGRAIYNIQDLQHFSKSRTYSELMMFIRICNEKVKGLKVSDIQEH---SEIIGGLLGLLDTLEGWVGEHPPLQQPMRFGNKAFR 171          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: W7TJN7_9STRA (Serine/threonine-protein phosphatase 2A activator n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJN7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-20
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   19 VRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            VRAI T  DL  FQNSKTY++ +AFIR CN +V G+ IS       G   V  +V  L++   WVDDIP + +PMRFGNKAFR
Sbjct:    8 VRAITTQTDLEAFQNSKTYADFLAFIRACNQSVRGIAISQDYPNKNGPV-VSALVAYLEEAWGWVDDIPALQQPMRFGNKAFR 89          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: A0A7S2HGZ3_9STRA (Serine/threonine-protein phosphatase 2A activator (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGZ3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.880e-18
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    7 FRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRIS--SLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            F VP +AI   ADLN+F+ SKTYSE++ F+R CN+AV+G R+   S++    G +    ++ ML+    W+  IPP  +PMRFGN AFR
Sbjct:    3 FEVPKKAIFNTADLNNFKISKTYSEILVFVRRCNEAVLGRRLQDDSIEMPIAGQQ----VIVMLETFEGWIASIPPSQQPMRFGNAAFR 87          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: A0A6G0X172_9STRA (Serine/threonine-protein phosphatase 2A activator n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X172_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.500e-17
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 MTFRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            MTF +P RAI + ADL HF  S TY  +M F++  N++V G +++        S++V  +  +L  ++TW+D+IPPI +PMRFGNKAFR
Sbjct:    1 MTFVIPQRAIFSEADLRHFVRSNTYEMIMIFVKALNESVKGKKLTDEIPV---SQNVESVCTLLATLSTWIDEIPPIAQPMRFGNKAFR 86          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: S4RDM6_PETMA (Serine/threonine-protein phosphatase 2A activator n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RDM6_PETMA)

HSP 1 Score: 77.8 bits (190), Expect = 8.580e-17
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 FRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            F VP R I  + D+  ++ S+ Y++ M FI   N+AV G ++SS  +    SE+V ++V +L  M  W++++PP+D+P RFGNKAFR
Sbjct:    9 FMVPKREILAVPDMGKWKRSQAYADYMGFILTLNEAVKGKKLSSEFKV---SEAVEQLVCLLDMMDRWIEEVPPVDQPQRFGNKAFR 92          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: K1RWQ9_CRAGI (Serine/threonine-protein phosphatase 2A activator n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1RWQ9_CRAGI)

HSP 1 Score: 82.4 bits (202), Expect = 1.130e-16
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 FRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            ++VP + I    DL  ++ S+ Y +L+ FI   NDAV G +IS        S+++  +V ML +M+ W+D+IPPID+P RFGNKAFR
Sbjct:   45 YKVPTKEIYEPQDLKKWEESEAYRDLVGFITAINDAVKGKKISDSYPV---SQTIENLVAMLDKMSNWIDEIPPIDQPQRFGNKAFR 128          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: A0A087TH70_STEMI (Serine/threonine-protein phosphatase 2A activator (Fragment) n=3 Tax=Stegodyphus TaxID=175340 RepID=A0A087TH70_STEMI)

HSP 1 Score: 80.1 bits (196), Expect = 5.850e-16
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   13 VPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            +P+R + ++AD+  ++ S+ Y E M FI   N+AV G +IS +  T   SE V ++  ML+ +  W+D+IPPI++P RFGNKAFR
Sbjct:    7 LPIREVSSIADMKKWEQSEAYHEYMGFILAMNEAVKGKKISDVAVT---SEVVYKMCDMLEILDKWIDEIPPIEQPQRFGNKAFR 88          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: A0A4Y2EGK7_ARAVE (Serine/threonine-protein phosphatase 2A activator n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2EGK7_ARAVE)

HSP 1 Score: 79.7 bits (195), Expect = 8.220e-16
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 FRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            F  P + I +LAD+  ++NS  Y E   FI   N+AV G +IS +  T   SE+V ++  +L+ +  W+D+IPPI++P RFGNKAFR
Sbjct:    7 FITPAKEIHSLADMRKWENSDAYHEYTGFIMAMNEAVKGKKISDVAAT---SENVIKLRQLLETLDKWIDEIPPIEQPQRFGNKAFR 90          
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Match: A0A3R7H8I4_9STRA (Serine/threonine-protein phosphatase 2A activator n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H8I4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.580e-15
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 FRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQTDGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR 267
            F+ P RAI   +DL HF  S+    ++ F++  N++V G RISS  +    S +V + V ++ ++ +WVD+IPPI +PMRFGNKAFR
Sbjct:   11 FKEPSRAIFAQSDLRHFLGSEAQQMILVFVKHLNESVKGERISSEYEV---SPNVQKAVDLVDELNSWVDEIPPIQQPMRFGNKAFR 94          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104560.405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G912_ECTSI3.900e-3875.82Serine/threonine-protein phosphatase 2A activator ... [more]
A0A7S3Y2V7_HETAK1.330e-2250.57Serine/threonine-protein phosphatase 2A activator ... [more]
W7TJN7_9STRA1.030e-2053.01Serine/threonine-protein phosphatase 2A activator ... [more]
A0A7S2HGZ3_9STRA7.880e-1846.07Serine/threonine-protein phosphatase 2A activator ... [more]
A0A6G0X172_9STRA2.500e-1744.94Serine/threonine-protein phosphatase 2A activator ... [more]
S4RDM6_PETMA8.580e-1741.38Serine/threonine-protein phosphatase 2A activator ... [more]
K1RWQ9_CRAGI1.130e-1643.68Serine/threonine-protein phosphatase 2A activator ... [more]
A0A087TH70_STEMI5.850e-1643.53Serine/threonine-protein phosphatase 2A activator ... [more]
A0A4Y2EGK7_ARAVE8.220e-1643.68Serine/threonine-protein phosphatase 2A activator ... [more]
A0A3R7H8I4_9STRA1.580e-1543.68Serine/threonine-protein phosphatase 2A activator ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104560contigF-distichus_contig104560:499..988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue3.6e-31
Seed eggNOG ortholog2880.D7G912
Preferred nameRRD2
KEGG koko:K02132,ko:K17605,ko:K18464
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04144,ko04714,ko04931,ko05010,ko05012,ko05016,map00190,map01100,map04144,map04714,map04931,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categorymitochondrion
GOsGO:0000159,GO:0000166,GO:0000413,GO:0001101,GO:0003674,GO:0003755,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008160,GO:0008287,GO:0009056,GO:0009057,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010453,GO:0010468,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010921,GO:0010922,GO:0010923,GO:0010941,GO:0010942,GO:0016020,GO:0016021,GO:0016567,GO:0016853,GO:0016859,GO:0017076,GO:0018193,GO:0018208,GO:0019208,GO:0019211,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0023052,GO:0030163,GO:0030234,GO:0030554,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032515,GO:0032516,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033993,GO:0034702,GO:0034703,GO:0034704,GO:0035303,GO:0035304,GO:0035305,GO:0035306,GO:0035307,GO:0035308,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042802,GO:0042803,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043666,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0045175,GO:0045595,GO:0045936,GO:0045937,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051248,GO:0051336,GO:0051345,GO:0051346,GO:0051603,GO:0051721,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0072542,GO:0080090,GO:0097159,GO:0097305,GO:0097367,GO:0098772,GO:0098796,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1902495,GO:1903293,GO:1904785,GO:1905933,GO:1990351
EggNOG free text desc.phosphatase activator activity
EggNOG OGsCOG5057@1,KOG2867@2759
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko04131
Exons2
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.1569917-CDS-F-distichus_contig104560:498..6991622928965.1569917-CDS-F-distichus_contig104560:498..699Fucus distichus monoicousCDSF-distichus_contig104560 499..699 -
1690885084.8144927-CDS-F-distichus_contig104560:498..6991690885084.8144927-CDS-F-distichus_contig104560:498..699Fucus distichus monoicousCDSF-distichus_contig104560 499..699 -
1622928965.191625-CDS-F-distichus_contig104560:919..9881622928965.191625-CDS-F-distichus_contig104560:919..988Fucus distichus monoicousCDSF-distichus_contig104560 920..988 -
1690885084.827306-CDS-F-distichus_contig104560:919..9881690885084.827306-CDS-F-distichus_contig104560:919..988Fucus distichus monoicousCDSF-distichus_contig104560 920..988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104560.405.1prot_F-distichus_contig104560.405.1Fucus distichus monoicouspolypeptideF-distichus_contig104560 499..988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104560.405.1

>prot_F-distichus_contig104560.405.1 ID=prot_F-distichus_contig104560.405.1|Name=mRNA_F-distichus_contig104560.405.1|organism=Fucus distichus monoicous|type=polypeptide|length=90bp
MTFRVPVRAIRTLADLNHFQNSKTYSELMAFIRLCNDAVMGVRISSLQQT
DGGSESVGRIVGMLQQMATWVDDIPPIDEPMRFGNKAFR*
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mRNA from alignment at F-distichus_contig104560:499..988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104560.405.1 ID=mRNA_F-distichus_contig104560.405.1|Name=mRNA_F-distichus_contig104560.405.1|organism=Fucus distichus monoicous|type=mRNA|length=490bp|location=Sequence derived from alignment at F-distichus_contig104560:499..988- (Fucus distichus monoicous)
ATGACATTCAGGGTACCAGTGCGAGCGATCAGGACACTTGCCGACTTGAA CCACTTTCAAAACTCCAAGGTGAAACGGAAAAACACTGCAGGTGGTGAAA AACACTGCAGGTGGTGGGCTTCTTCGTGCCCAAAACGGAAAAACACTGCA GGTGGTGGGCTTCTTCGTGCCCAATTAACAGATGATGTGCGTGTGCGTCG ATGTGTTGTACCTCGTGCAAGTTTCCGGAACATGTTTAGTTCTGTATTTG ATGATCGTCCGTTGCTTGTCGGCTGCTGAACGTTTACAGACCTACTCGGA GCTGATGGCCTTCATCCGGTTGTGTAACGATGCTGTGATGGGCGTTCGGA TTTCATCGCTTCAGCAAACTGACGGGGGAAGTGAAAGCGTCGGTCGCATA GTGGGAATGTTGCAGCAGATGGCAACCTGGGTAGACGATATTCCCCCTAT TGACGAGCCAATGAGGTTTGGCAACAAGGCCTTCAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig104560:499..988-

>mRNA_F-distichus_contig104560.405.1 ID=mRNA_F-distichus_contig104560.405.1|Name=mRNA_F-distichus_contig104560.405.1|organism=Fucus distichus monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at F-distichus_contig104560:499..988- (Fucus distichus monoicous)
ATGACATTCAGGGTACCAGTGCGAGCGATCAGGACACTTGCCGACTTGAA
CCACTTTCAAAACTCCAAGATGACATTCAGGGTACCAGTGCGAGCGATCA
GGACACTTGCCGACTTGAACCACTTTCAAAACTCCAAGACCTACTCGGAG
CTGATGGCCTTCATCCGGTTGTGTAACGATGCTGTGATGGGCGTTCGGAT
TTCATCGCTTCAGCAAACTGACGGGGGAAGTGAAAGCGTCGGTCGCATAG
TGGGAATGTTGCAGCAGATGGCAACCTGGGTAGACGATATTCCCCCTATT
GACGAGCCAATGAGGTTTGGCAACAAGGCCTTCAGGTGAACCTACTCGGA
GCTGATGGCCTTCATCCGGTTGTGTAACGATGCTGTGATGGGCGTTCGGA
TTTCATCGCTTCAGCAAACTGACGGGGGAAGTGAAAGCGTCGGTCGCATA
GTGGGAATGTTGCAGCAGATGGCAACCTGGGTAGACGATATTCCCCCTAT
TGACGAGCCAATGAGGTTTGGCAACAAGGCCTTCAGGTGA
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