mRNA_F-distichus_contig104525.403.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104525.403.1
Unique NamemRNA_F-distichus_contig104525.403.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104525.403.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 3.090e-42
Identity = 98/162 (60.49%), Postives = 114/162 (70.37%), Query Frame = 1 
Query:   34 GLGEAAGRLRGDTVTSVPE-NLWSFEPAFVFGASGGSGVNMGGVSVGGGMSPPITLGTGGASSAGS-FQGPAIESQQYELQMRMVDILMVSLQYARALGLLNNLLRRKIKSGQRSLVLFFVAKCYLKLRKVAACEAALERIVLEADEALGSLNSVGRSNSDQ 513
            G+G+  GR RG+   S    NL +FEP F +G           +S       P  +G GGA  AG+  QG AIE+QQYELQMRMV+ILM SLQY RAL LLNNLLRRKIKSGQRSLVL  VA+CYLKLRKVAACEAALER+VLEADEAL +   +GR++SDQ
Sbjct: 1722 GIGDTPGRFRGEGGGSAAAVNLKTFEPLFGYGXXXXXXXXXXXLS-------PTFIGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQ 1876
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BLAST of mRNA_F-distichus_contig104525.403.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.710e-41
Identity = 98/162 (60.49%), Postives = 115/162 (70.99%), Query Frame = 1 
Query:   34 GLGEAAGRLRGDTVTSV-PENLWSFEPAFVFGASGGSGVNMGGVSVGGGMSPPITLGTGGASSAGS-FQGPAIESQQYELQMRMVDILMVSLQYARALGLLNNLLRRKIKSGQRSLVLFFVAKCYLKLRKVAACEAALERIVLEADEALGSLNSVGRSNSDQ 513
            G+G+  GR RG+   +   ENL +FEPAF +                  +SP   +G GGA  AG+  QG AIE+QQYELQMRMV+ILM SLQY RAL LLNNLLRRKIKSGQRSLVL  VA+CYLKLRKVAACEAALER+VLEADEAL +   +GR++SDQ
Sbjct: 2168 GIGDTPGRFRGEGGGNAGAENLKTFEPAFGYXXXXXXXXXXXXXXX---LSPTF-IGPGGAHGAGAGMQGTAIETQQYELQMRMVEILMESLQYTRALRLLNNLLRRKIKSGQRSLVLVLVARCYLKLRKVAACEAALERVVLEADEALATYGQMGRTSSDQ 2325
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BLAST of mRNA_F-distichus_contig104525.403.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.040e-15
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:  205 GGASSAGSFQGPA--IESQQYELQMRMVDILMVSLQYARALGLLNNLLRRKIKSGQRSLVLFFVAKCYLKLRKVAACEAALERIVLEADEALGSLNSVG 495
            G     GS  GP+  +++QQYE+QM++ ++L  SLQ+ +A+ LL+ LLR ++ + QRS +   +A CYLK R++ A E +LER+ LEADEAL    S+G
Sbjct: 1277 GNGDMGGSAAGPSAVMDTQQYEVQMKLAEVLSTSLQFGKAVRLLHRLLRSRLVASQRSAIYMRLAHCYLKTRRLTAAEISLERVQLEADEALEVFASLG 1375
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104525.403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJE7_9PHAE3.090e-4260.49DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYV2_ECTSI2.710e-4160.49PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CI77_9STRA3.040e-1544.44DENN domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104525contigF-distichus_contig104525:29..1635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size513
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104525.403.1prot_F-distichus_contig104525.403.1Fucus distichus monoicouspolypeptideF-distichus_contig104525 29..1635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.9185982-CDS-F-distichus_contig104525:28..3511622928964.9185982-CDS-F-distichus_contig104525:28..351Fucus distichus monoicousCDSF-distichus_contig104525 29..351 +
1690885084.721569-CDS-F-distichus_contig104525:28..3511690885084.721569-CDS-F-distichus_contig104525:28..351Fucus distichus monoicousCDSF-distichus_contig104525 29..351 +
1622928964.9335806-CDS-F-distichus_contig104525:1113..11981622928964.9335806-CDS-F-distichus_contig104525:1113..1198Fucus distichus monoicousCDSF-distichus_contig104525 1114..1198 +
1690885084.730078-CDS-F-distichus_contig104525:1113..11981690885084.730078-CDS-F-distichus_contig104525:1113..1198Fucus distichus monoicousCDSF-distichus_contig104525 1114..1198 +
1622928964.9487689-CDS-F-distichus_contig104525:1530..16351622928964.9487689-CDS-F-distichus_contig104525:1530..1635Fucus distichus monoicousCDSF-distichus_contig104525 1531..1635 +
1690885084.7380083-CDS-F-distichus_contig104525:1530..16351690885084.7380083-CDS-F-distichus_contig104525:1530..1635Fucus distichus monoicousCDSF-distichus_contig104525 1531..1635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104525.403.1

>prot_F-distichus_contig104525.403.1 ID=prot_F-distichus_contig104525.403.1|Name=mRNA_F-distichus_contig104525.403.1|organism=Fucus distichus monoicous|type=polypeptide|length=171bp
MGGAAGGVGGNGLGEAAGRLRGDTVTSVPENLWSFEPAFVFGASGGSGVN
MGGVSVGGGMSPPITLGTGGASSAGSFQGPAIESQQYELQMRMVDILMVS
LQYARALGLLNNLLRRKIKSGQRSLVLFFVAKCYLKLRKVAACEAALERI
VLEADEALGSLNSVGRSNSDQ
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mRNA from alignment at F-distichus_contig104525:29..1635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104525.403.1 ID=mRNA_F-distichus_contig104525.403.1|Name=mRNA_F-distichus_contig104525.403.1|organism=Fucus distichus monoicous|type=mRNA|length=1607bp|location=Sequence derived from alignment at F-distichus_contig104525:29..1635+ (Fucus distichus monoicous)
ATGGGGGGAGCAGCAGGCGGGGTCGGGGGTAATGGACTGGGCGAGGCGGC
CGGCAGGCTTCGTGGAGATACTGTTACCTCGGTGCCCGAAAACCTGTGGT
CCTTCGAGCCAGCGTTCGTGTTTGGTGCTTCCGGAGGGAGTGGCGTTAAC
ATGGGAGGCGTTAGTGTCGGGGGGGGGATGTCACCGCCGATCACGCTAGG
GACCGGAGGAGCCTCGTCGGCCGGGAGTTTCCAGGGCCCCGCGATAGAGA
GCCAGCAGTACGAGCTCCAGATGAGGATGGTGGACATTCTCATGGTGTCG
CTGCAGTACGCTAGAGCCCTCGGGTGAGGCAGACGCTCAAGGCTTGAGGT
TTCACGTGACTCGTGCGTTCGGAAGAGGCGGGAAAGGAGTGACGAGGCAT
GCCGTTTTGAGGCATTCCTAGGACGATGTGTTATTCCATGAGTTGTAAAC
TTGTTCGGTAGAAATCATTTCATATCTATGTGCGATCGACGGAAAGCGCT
GATACCCCTAAATATCTTTTTAATTTCGTCAAGTTACGGTGTACTACAGG
GTTAGAATTGCCGTAGGTCGGGTGTTTGCTCTGTACGATACACACCCCAT
CATGAGGGTATGGTGGAAAAAGTTGTTTTCGCCTGATCTGACTTTCCTTG
GTATTTTACGAAATCTTCTCAAATGCAGGAAGAGCGAGGAAACGCTGTGG
TTGATCGGTAGACGAGCGTTATGCTCCAAAAGTTCAGTATCGAAATACTA
TGTAAAAATATCGGGTTGGGGGGGAGGGGGCGAGGGGGGAGTGCTAACAC
ACTAGTCATTAGCGATGCTGTTTTCGAAGAAGAGACGATAGCAACGAACT
ACCAACACCAAATACAAATTCAGCCCATACCAACACCTGTGTTACAACCT
TTTCACTCGTTATATATAGTAACAATGGTTTTGATACTACATCTGGCGTT
CCATTGTCTTTTAGCGGGGTTTTGGTTCAAATATTATGATTCGTGTCATA
GTTCGCTCCATATTTACTTTACTTCATTCAATCCCTATCCCCCATTATCC
CGCTTCCCCGGATAACACGAAACGGGACGGAAAAGCCTCCTGAACAACCT
CTTGAGGAGAAAGATCAAGTCCGGGCAACGCTCCTTGGTTCTCTTTTTCG
TAGCCAAGTGCTATCTCAAGGTTAGCCCTATGCTGTAAAACTACTGTACG
CAGAATATATGATTTCCGTACGATTGCGGTGGCTTGTCATTAATGATATG
ATAAATAATGGGAAGCGTGGATCTATTTTGTTTACTGTCGTTCGAACGGA
ACTGTTGTACTCTACCGAAGGGGTACCCTAAATGAGCATCGCGGTTCGCG
ACGTTTGCCCTGTCTTGCCTCGCCGTACCTTGCCTCGTGGCCCGCTGTCA
CGTACGCACGTACATTGGGCTGTGTGCGGTAAGCGATGGTCGAGGCGGTT
GGTCTGTGCATGTGTTGATTGTTGATTCATTATGTGTCGGCTGATTGGAC
AGCTCCGCAAGGTGGCCGCCTGTGAGGCTGCCCTGGAACGAATCGTCCTG
GAGGCGGACGAGGCGCTCGGATCTTTGAACAGCGTAGGGCGGTCCAACTC
CGACCAG
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Coding sequence (CDS) from alignment at F-distichus_contig104525:29..1635+

>mRNA_F-distichus_contig104525.403.1 ID=mRNA_F-distichus_contig104525.403.1|Name=mRNA_F-distichus_contig104525.403.1|organism=Fucus distichus monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at F-distichus_contig104525:29..1635+ (Fucus distichus monoicous)
ATGGGGGGAGCAGCAGGCGGGGTCGGGGGTAATGGACTGGGCGAGGCGGC
CGGCAGGCTTCGTGGAGATACTGTTACCTCGGTGCCCGAAAACCTGTGGT
CCTTCGAGCCAGCGTTCGTGTTTGGTGCTTCCGGAGGGAGTGGCGTTAAC
ATGGGAGGCGTTAGTGTCGGGGGGGGGATGTCACCGCCGATCACGCTAGG
GACCGGAGGAGCCTCGTCGGCCGGGAGTTTCCAGGGCCCCGCGATAGAGA
GCCAGCAGTACGAGCTCCAGATGAGGATGGTGGACATTCTCATGGTGTCG
CTGCAGTACGCTAGAGCCCTCGGATGGGGGGAGCAGCAGGCGGGGTCGGG
GGTAATGGACTGGGCGAGGCGGCCGGCAGGCTTCGTGGAGATACTGTTAC
CTCGGTGCCCGAAAACCTGTGGTCCTTCGAGCCAGCGTTCGTGTTTGGTG
CTTCCGGAGGGAGTGGCGTTAACATGGGAGGCGTTAGTGTCGGGGGGGGG
ATGTCACCGCCGATCACGCTAGGGACCGGAGGAGCCTCGTCGGCCGGGAG
TTTCCAGGGCCCCGCGATAGAGAGCCAGCAGTACGAGCTCCAGATGAGGA
TGGTGGACATTCTCATGGTGTCGCTGCAGTACGCTAGAGCCCTCGGCCTC
CTGAACAACCTCTTGAGGAGAAAGATCAAGTCCGGGCAACGCTCCTTGGT
TCTCTTTTTCGTAGCCAAGTGCTATCTCAAGCCTCCTGAACAACCTCTTG
AGGAGAAAGATCAAGTCCGGGCAACGCTCCTTGGTTCTCTTTTTCGTAGC
CAAGTGCTATCTCAAGCTCCGCAAGGTGGCCGCCTGTGAGGCTGCCCTGG
AACGAATCGTCCTGGAGGCGGACGAGGCGCTCGGATCTTTGAACAGCGTA
GGGCGGTCCAACTCCGACCAGCTCCGCAAGGTGGCCGCCTGTGAGGCTGC
CCTGGAACGAATCGTCCTGGAGGCGGACGAGGCGCTCGGATCTTTGAACA
GCGTAGGGCGGTCCAACTCCGACCAG
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