mRNA_F-distichus_contig10450.401.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10450.401.1
Unique NamemRNA_F-distichus_contig10450.401.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Match: A0A6H5J9E2_9PHAE (DDE-1 domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-17
Identity = 56/111 (50.45%), Postives = 65/111 (58.56%), Query Frame = 3 
Query:   99 HNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLATIVANASVAK*LREEAVSRKMKMGTKGLAEGG------TSPTCWTPR-RC*PRLERRSSAKAKTLP 410
            H +L+D  GQV+V+  PPNCTS HQP D+GIIA TK +YR +LL   V+   VA  LR EA SRKM  GT GLAEG        +    T R R  P    R   KAKTLP
Sbjct:  211 HGDLIDPVGQVEVVMYPPNCTSVHQPMDMGIIAATKVIYRRELLDAKVSTMLVAHALRAEAKSRKMARGTAGLAEGNHPHVLDAADLLKTARGRITPTTIARCFVKAKTLP 321
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BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Match: A0A6H5KWS4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.700e-16
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 3 
Query:   99 HNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLATIVANASVAK*LREEAVSRKMKMGTKGLAEG 326
            H +LVD RGQV +   PPNCTS HQP D+GIIA TK  YR +LL    +   VA  LR EA +RKMK GT GLA+G
Sbjct:  208 HGDLVDDRGQVTIKFYPPNCTSVHQPMDLGIIAETKCNYRKELLDVKTSTMLVADTLRAEAKARKMKAGTMGLAQG 283
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BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Match: A0A6H5L4D9_9PHAE (DDE-1 domain-containing protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.470e-16
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = 3 
Query:   99 HNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLATIVANASVAK*LREEAVSRKMKMGTKGLAEG 326
            H +LVD RGQV +   PPNCTS HQP D+GIIA TK  YR +LL    +   VA  LR EA +RKMK GT GLA+G
Sbjct:  281 HGDLVDDRGQVTIKFYPPNCTSVHQPVDLGIIAETKCNYRKELLDVKTSTMLVADTLRAEAKARKMKAGTMGLAQG 356
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BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Match: A0A6H5JB59_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB59_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.560e-14
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:   99 HNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLATIVANASVAK*LREEAVSRKMKMGTKGLAEG 326
            H +LVD + QVK++  PPNCTSKHQP D GIIA  K  YR++LL   V   + A  LRE+A  R++  G  GLAEG
Sbjct:  107 HADLVDPKEQVKILDLPPNCTSKHQPMDAGIIAAWKVRYRTKLLGIRVDTMTSAAQLREQAKERRVIRGCMGLAEG 182
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BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Match: A0A6H5K258_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K258_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 8.780e-13
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 3 
Query:   99 HNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLATIVANASVAK*LREEAVSRKMKMGTKGLAEG 326
            H +LVD + QVK+   PPNCTSKHQP D GIIA  K  YR++LL   V   +    LRE+A  RK+  G   LAEG
Sbjct:  228 HADLVDTKEQVKIRELPPNCTSKHQPMDAGIIAAWKVRYRAKLLGIRVDTMTSTTQLREQAKERKVIRGCMRLAEG 303
[Close]
BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Match: A0A6H5KT98_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT98_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.570e-10
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 3 
Query:   84 WMQ--LVHNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLATIVANASVAK*LREEAVSRKMKMGTKGLAEG 326
            W Q  L H   V +  +VK++  PPNCTSKHQP D GIIA  K  YR++L    V   + A  LRE+A  RK+  G  GLAEG
Sbjct:  192 WSQVFLPHVRSVTSE-KVKILELPPNCTSKHQPMDAGIIAAWKVRYRTKLPGIRVDTMTSAAQLREQAKERKVIRGCMGLAEG 273
[Close]
BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Match: A0A6H5JM90_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM90_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 8.240e-8
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:   99 HNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLATIVANASVAK*LR 272
            H +LVD + QVK++  PPNCTSKHQP D GIIA  K  +R++LL   V   + A  LR
Sbjct:  206 HADLVDPKEQVKILELPPNCTSKHQPMDAGIIAAWKVRHRTKLLRIRVDTMTSAAQLR 263
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10450.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5J9E2_9PHAE1.350e-1750.45DDE-1 domain-containing protein (Fragment) n=2 Tax... [more]
A0A6H5KWS4_9PHAE1.700e-1657.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4D9_9PHAE4.470e-1657.89DDE-1 domain-containing protein n=8 Tax=Ectocarpus... [more]
A0A6H5JB59_9PHAE3.560e-1452.63DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K258_9PHAE8.780e-1351.32DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT98_9PHAE2.570e-1048.19DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JM90_9PHAE8.240e-851.72HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10450contigF-distichus_contig10450:5304..6125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size410
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10450.401.1prot_F-distichus_contig10450.401.1Fucus distichus monoicouspolypeptideF-distichus_contig10450 5860..6039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.597261-UTR-F-distichus_contig10450:5303..53311622928964.597261-UTR-F-distichus_contig10450:5303..5331Fucus distichus monoicousUTRF-distichus_contig10450 5304..5331 -
1690885084.5918264-UTR-F-distichus_contig10450:5303..53311690885084.5918264-UTR-F-distichus_contig10450:5303..5331Fucus distichus monoicousUTRF-distichus_contig10450 5304..5331 -
1622928964.6091545-UTR-F-distichus_contig10450:5743..58591622928964.6091545-UTR-F-distichus_contig10450:5743..5859Fucus distichus monoicousUTRF-distichus_contig10450 5744..5859 -
1690885084.6023226-UTR-F-distichus_contig10450:5743..58591690885084.6023226-UTR-F-distichus_contig10450:5743..5859Fucus distichus monoicousUTRF-distichus_contig10450 5744..5859 -
1622928964.6353073-UTR-F-distichus_contig10450:6039..61251622928964.6353073-UTR-F-distichus_contig10450:6039..6125Fucus distichus monoicousUTRF-distichus_contig10450 6040..6125 -
1690885084.6183863-UTR-F-distichus_contig10450:6039..61251690885084.6183863-UTR-F-distichus_contig10450:6039..6125Fucus distichus monoicousUTRF-distichus_contig10450 6040..6125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.6223612-CDS-F-distichus_contig10450:5859..60391622928964.6223612-CDS-F-distichus_contig10450:5859..6039Fucus distichus monoicousCDSF-distichus_contig10450 5860..6039 -
1690885084.6105616-CDS-F-distichus_contig10450:5859..60391690885084.6105616-CDS-F-distichus_contig10450:5859..6039Fucus distichus monoicousCDSF-distichus_contig10450 5860..6039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10450.401.1

>prot_F-distichus_contig10450.401.1 ID=prot_F-distichus_contig10450.401.1|Name=mRNA_F-distichus_contig10450.401.1|organism=Fucus distichus monoicous|type=polypeptide|length=60bp
MQLVHNELVDARGQVKVMTCPPNCTSKHQPRDVGIIATTKRLYRSQLLAT
IVANASVAK*
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mRNA from alignment at F-distichus_contig10450:5304..6125-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10450.401.1 ID=mRNA_F-distichus_contig10450.401.1|Name=mRNA_F-distichus_contig10450.401.1|organism=Fucus distichus monoicous|type=mRNA|length=822bp|location=Sequence derived from alignment at F-distichus_contig10450:5304..6125- (Fucus distichus monoicous)
ACGACCTTCAAGAAATGGTGAAACTTGCGCCTCCTGCCGAAGGTTTGCGC
GTGGACCCATGAAAAGGTGCTGCTCCTGATGGATGGATGCAGCTTGTGCA
CAACGAGCTCGTAGACGCCCGCGGCCAGGTGAAGGTGATGACGTGCCCGC
CGAACTGTACCAGCAAGCACCAGCCGAGGGACGTGGGCATTATCGCGACA
ACTAAGAGGCTATACAGGAGCCAGCTGCTCGCCACCATTGTGGCGAACGC
GTCCGTAGCAAAGTAGCTGCGGGAGGAGGCGGTGTCTCGGAAGATGAAGA
TGGGCACGAAAGGGCTGGCGGAGGGGGGTACAAGCCCCACCTGTTGGACG
CCGCGGAGATGCTGACCGAGGCTTGAAAGGAGGTTGACCATGAGAGTATC
GCAAAGTACTCGTTCGTGCTGTGTTGATGTTTTTCCTCTGATATAGTACG
ACTGTATTGTAGTCACTTCGTGTTTGCTTGTTTTGCCCTTTTCAATTGTT
TTTATATATATTTTGACGTCTTCGTTTTTTTTTAGAATAATACGTTGATT
GACATTGACATTATTTCCCTCTTGCCGTATTTTTGTGTTTTATGTGGGTT
CTTTTATGTACCTATTCGTTTGCCCACGGTTGGCACAGTGCTGCACTGCT
TTTCCTTCCGCTTGGCACAGTATTGGGGTCGGACTGCTCTTGATTGGCTG
ACTGTACCGCAAAAAATAATGCATCATGGCACTTGTCCTGGAAGGTAGCT
ATCAATAGCTCTTACACGTTCCAAATCTATCCCCCCCGCCACAGGTCCTC
CGCGAAGGCGAAGACGCTGCCA
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Coding sequence (CDS) from alignment at F-distichus_contig10450:5304..6125-

>mRNA_F-distichus_contig10450.401.1 ID=mRNA_F-distichus_contig10450.401.1|Name=mRNA_F-distichus_contig10450.401.1|organism=Fucus distichus monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at F-distichus_contig10450:5304..6125- (Fucus distichus monoicous)
ATGCAGCTTGTGCACAACGAGCTCGTAGACGCCCGCGGCCAGGTGAAGGT
GATGACGTGCCCGCCGAACTGTACCAGCAAGCACCAGCCGAGGGACGTGG
GCATTATCGCGACAACTAAGAGGCTATACAGGAGCCAGCTGCTCGCCACC
ATTGTGGCGAACGCGTCCGTAGCAAAGTAGATGCAGCTTGTGCACAACGA
GCTCGTAGACGCCCGCGGCCAGGTGAAGGTGATGACGTGCCCGCCGAACT
GTACCAGCAAGCACCAGCCGAGGGACGTGGGCATTATCGCGACAACTAAG
AGGCTATACAGGAGCCAGCTGCTCGCCACCATTGTGGCGAACGCGTCCGT
AGCAAAGTAG
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