mRNA_F-distichus_contig104493.400.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104493.400.1
Unique NamemRNA_F-distichus_contig104493.400.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig104493.400.1 vs. uniprot
Match: D7FT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT41_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.150e-18
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 AAARRFCQQSFLSGAQQRLCYAVEPFSAEVARWLSMGVPPERVCRKLSVRNP 156
            AA  R+C+QSFLSG+QQR+CY++ PF+AEV +WL MGV PERVCRKL  RNP
Sbjct:   52 AAIERYCEQSFLSGSQQRVCYSIAPFAAEVGKWLGMGVSPERVCRKLGKRNP 103
[Close]
BLAST of mRNA_F-distichus_contig104493.400.1 vs. uniprot
Match: A0A836CK57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK57_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.030e-15
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:   13 RFCQQSFLSGAQQRLCYAVEPFSAEVARWLSMGVPPERVCRKLSVRNPDAYCFDAREAERQDIRPLDWHNRPPSIPEGIE---CSIEHRNSPAPRWVLL 300
            R+CQQSFL+ AQ++LCY +EP   +VA+ +  G+PP+RVC +LS  NPD    +      QD   L +  +P   P G+    C++E+ +S    WV L
Sbjct:   62 RYCQQSFLNSAQRKLCYHLEPMKVDVAQLIQRGLPPDRVCTRLSSSNPDVCAVE------QDAAALSF--KPGGEPAGMSSMNCTVEYTSSRQSVWVAL 152
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104493.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT41_ECTSI5.150e-1869.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CK57_9STRA1.030e-1539.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104493contigF-distichus_contig104493:1015..1809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104493.400.1prot_F-distichus_contig104493.400.1Fucus distichus monoicouspolypeptideF-distichus_contig104493 1015..1809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.5292332-CDS-F-distichus_contig104493:1014..10951622928964.5292332-CDS-F-distichus_contig104493:1014..1095Fucus distichus monoicousCDSF-distichus_contig104493 1015..1095 +
1690885084.560066-CDS-F-distichus_contig104493:1014..10951690885084.560066-CDS-F-distichus_contig104493:1014..1095Fucus distichus monoicousCDSF-distichus_contig104493 1015..1095 +
1622928964.5436687-CDS-F-distichus_contig104493:1407..14821622928964.5436687-CDS-F-distichus_contig104493:1407..1482Fucus distichus monoicousCDSF-distichus_contig104493 1408..1482 +
1690885084.5703225-CDS-F-distichus_contig104493:1407..14821690885084.5703225-CDS-F-distichus_contig104493:1407..1482Fucus distichus monoicousCDSF-distichus_contig104493 1408..1482 +
1622928964.555541-CDS-F-distichus_contig104493:1659..18091622928964.555541-CDS-F-distichus_contig104493:1659..1809Fucus distichus monoicousCDSF-distichus_contig104493 1660..1809 +
1690885084.580308-CDS-F-distichus_contig104493:1659..18091690885084.580308-CDS-F-distichus_contig104493:1659..1809Fucus distichus monoicousCDSF-distichus_contig104493 1660..1809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104493.400.1

>prot_F-distichus_contig104493.400.1 ID=prot_F-distichus_contig104493.400.1|Name=mRNA_F-distichus_contig104493.400.1|organism=Fucus distichus monoicous|type=polypeptide|length=102bp
AAARRFCQQSFLSGAQQRLCYAVEPFSAEVARWLSMGVPPERVCRKLSVR
NPDAYCFDAREAERQDIRPLDWHNRPPSIPEGIECSIEHRNSPAPRWVLL
D*
back to top

mRNA from alignment at F-distichus_contig104493:1015..1809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104493.400.1 ID=mRNA_F-distichus_contig104493.400.1|Name=mRNA_F-distichus_contig104493.400.1|organism=Fucus distichus monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at F-distichus_contig104493:1015..1809+ (Fucus distichus monoicous)
GCTGCGGCGCGCAGGTTCTGCCAGCAATCGTTCCTGAGCGGCGCCCAACA
GCGTCTGTGCTACGCCGTCGAACCATTTTCCGTGAGTGCGTCGCTTTTGC
CGCCATCAAATAACGGCAAAAAAATCGCGACTGTTCCAGATTTTTCGGAT
GTCTTGATAGCAGCGCGTGTTTATCATGAAATGTTTCGATAGTACCCTAC
ACTATTCCGCTCACCTGAGCAAACGCAGAGCTCTAGTGCGAGAGCTCTGC
CCGCGAGTTGTGTGGCAGCCAAGAATAACTCAAAGTGCGACGGGGGAAAG
GCTCTGCAACATCAGGGAAAATGAAATACGTCTTCGTAATTCCTGCTAAA
CGACGAGCAAACAGCGCATTCGATCCTCTCTTGTTGCCGGCAGGCAGAAG
TGGCGCGGTGGCTGAGCATGGGGGTTCCACCGGAACGCGTTTGCCGCAAG
CTCAGCGTGCGGAATCCCGTGAGTGTCGAGAGTGTTTGCCCCCTTATTCA
GCAGCCGCCGACGAGCCCTCCCTCAAGCAAGATCCGCACTTTTCTTTTTG
CCAGCGCTATACGATCTTATTTTTCACCCAATCGGCGTGACATCGCGCGG
TGTTCCCCCATTCTTACGCCTCGCCAATGCTGCGCCTCGAGTTAGGATGC
TTACTGCTTTGACGCGAGGGAAGCTGAGCGACAGGACATTCGGCCATTGG
ATTGGCACAATAGACCACCCTCTATCCCCGAGGGTATCGAATGCTCTATC
GAGCACCGCAACTCCCCGGCTCCGCGGTGGGTGCTGCTGGACTAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig104493:1015..1809+

>mRNA_F-distichus_contig104493.400.1 ID=mRNA_F-distichus_contig104493.400.1|Name=mRNA_F-distichus_contig104493.400.1|organism=Fucus distichus monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at F-distichus_contig104493:1015..1809+ (Fucus distichus monoicous)
GCTGCGGCGCGCAGGTTCTGCCAGCAATCGTTCCTGAGCGGCGCCCAACA
GCGTCTGTGCTACGCCGTCGAACCATTTTCCGCTGCGGCGCGCAGGTTCT
GCCAGCAATCGTTCCTGAGCGGCGCCCAACAGCGTCTGTGCTACGCCGTC
GAACCATTTTCCGCAGAAGTGGCGCGGTGGCTGAGCATGGGGGTTCCACC
GGAACGCGTTTGCCGCAAGCTCAGCGTGCGGAATCCCGCAGAAGTGGCGC
GGTGGCTGAGCATGGGGGTTCCACCGGAACGCGTTTGCCGCAAGCTCAGC
GTGCGGAATCCCGATGCTTACTGCTTTGACGCGAGGGAAGCTGAGCGACA
GGACATTCGGCCATTGGATTGGCACAATAGACCACCCTCTATCCCCGAGG
GTATCGAATGCTCTATCGAGCACCGCAACTCCCCGGCTCCGCGGTGGGTG
CTGCTGGACTAGGATGCTTACTGCTTTGACGCGAGGGAAGCTGAGCGACA
GGACATTCGGCCATTGGATTGGCACAATAGACCACCCTCTATCCCCGAGG
GTATCGAATGCTCTATCGAGCACCGCAACTCCCCGGCTCCGCGGTGGGTG
CTGCTGGACTAG
back to top