mRNA_F-distichus_contig104469.398.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104469.398.1
Unique NamemRNA_F-distichus_contig104469.398.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104469.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104469contigF-distichus_contig104469:890..1465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104469.398.1prot_F-distichus_contig104469.398.1Fucus distichus monoicouspolypeptideF-distichus_contig104469 1055..1372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.0405424-UTR-F-distichus_contig104469:889..10541622928964.0405424-UTR-F-distichus_contig104469:889..1054Fucus distichus monoicousUTRF-distichus_contig104469 890..1054 +
1690885084.3219075-UTR-F-distichus_contig104469:889..10541690885084.3219075-UTR-F-distichus_contig104469:889..1054Fucus distichus monoicousUTRF-distichus_contig104469 890..1054 +
1622928964.0697227-UTR-F-distichus_contig104469:1372..14651622928964.0697227-UTR-F-distichus_contig104469:1372..1465Fucus distichus monoicousUTRF-distichus_contig104469 1373..1465 +
1690885084.3514252-UTR-F-distichus_contig104469:1372..14651690885084.3514252-UTR-F-distichus_contig104469:1372..1465Fucus distichus monoicousUTRF-distichus_contig104469 1373..1465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.054699-CDS-F-distichus_contig104469:1054..13721622928964.054699-CDS-F-distichus_contig104469:1054..1372Fucus distichus monoicousCDSF-distichus_contig104469 1055..1372 +
1690885084.3377357-CDS-F-distichus_contig104469:1054..13721690885084.3377357-CDS-F-distichus_contig104469:1054..1372Fucus distichus monoicousCDSF-distichus_contig104469 1055..1372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104469.398.1

>prot_F-distichus_contig104469.398.1 ID=prot_F-distichus_contig104469.398.1|Name=mRNA_F-distichus_contig104469.398.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
MTSLGVFSSSGSSSASSAPSAPASAAAAAAAAVAARTAAAAFLRSRSVDN
DLAAAAAPSPAPLPPQNLPAPSRSPPSSFPSPPAPGRSPSWIASTATARS
TPGPR*
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mRNA from alignment at F-distichus_contig104469:890..1465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104469.398.1 ID=mRNA_F-distichus_contig104469.398.1|Name=mRNA_F-distichus_contig104469.398.1|organism=Fucus distichus monoicous|type=mRNA|length=576bp|location=Sequence derived from alignment at F-distichus_contig104469:890..1465+ (Fucus distichus monoicous)
TGCTGCTCGGCGCCTTGGTCTTTCTTTCCGCCTCCCTCTGCATCCGCCTT
TTCTTTCGCCGCCGCAGCCTGGACCACCGCAGCTTGCACCGCCGCCATGC
GCGCGGCCACCGCCGAAGGCAACTGACGACGCTGTAACGCTGCCGCGGGA
TCCTCCACTCGCTCCATGACCTCTCTCGGCGTCTTCTCTTCTTCAGGAAG
CTCCTCGGCATCTTCGGCACCCTCAGCCCCAGCCTCCGCAGCAGCAGCTG
CGGCAGCAGCTGTGGCAGCGCGCACGGCGGCCGCTGCTTTTCTCCGCTCC
AGGAGCGTCGACAACGATCTCGCCGCCGCGGCTGCTCCGTCCCCAGCACC
ACTTCCACCACAAAACTTGCCCGCACCTTCACGCTCACCACCGTCGTCCT
TCCCGTCACCACCAGCGCCAGGGCGTTCACCATCGTGGATAGCATCCACC
GCCACCGCGCGTTCAACCCCTGGGCCGCGATGATCCTTGGACGGCGCATC
GCGCTCGACGCCCACAGCCGCAGCACCAGGAGCAGTATTTCCAGCAATGC
CAGCATTAGAAACAGCAGCAATAGCA
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Coding sequence (CDS) from alignment at F-distichus_contig104469:890..1465+

>mRNA_F-distichus_contig104469.398.1 ID=mRNA_F-distichus_contig104469.398.1|Name=mRNA_F-distichus_contig104469.398.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig104469:890..1465+ (Fucus distichus monoicous)
ATGACCTCTCTCGGCGTCTTCTCTTCTTCAGGAAGCTCCTCGGCATCTTC
GGCACCCTCAGCCCCAGCCTCCGCAGCAGCAGCTGCGGCAGCAGCTGTGG
CAGCGCGCACGGCGGCCGCTGCTTTTCTCCGCTCCAGGAGCGTCGACAAC
GATCTCGCCGCCGCGGCTGCTCCGTCCCCAGCACCACTTCCACCACAAAA
CTTGCCCGCACCTTCACGCTCACCACCGTCGTCCTTCCCGTCACCACCAG
CGCCAGGGCGTTCACCATCGTGGATAGCATCCACCGCCACCGCGCGTTCA
ACCCCTGGGCCGCGATGAATGACCTCTCTCGGCGTCTTCTCTTCTTCAGG
AAGCTCCTCGGCATCTTCGGCACCCTCAGCCCCAGCCTCCGCAGCAGCAG
CTGCGGCAGCAGCTGTGGCAGCGCGCACGGCGGCCGCTGCTTTTCTCCGC
TCCAGGAGCGTCGACAACGATCTCGCCGCCGCGGCTGCTCCGTCCCCAGC
ACCACTTCCACCACAAAACTTGCCCGCACCTTCACGCTCACCACCGTCGT
CCTTCCCGTCACCACCAGCGCCAGGGCGTTCACCATCGTGGATAGCATCC
ACCGCCACCGCGCGTTCAACCCCTGGGCCGCGATGA
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