mRNA_F-distichus_contig104462.397.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104462.397.1
Unique NamemRNA_F-distichus_contig104462.397.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104462.397.1 vs. uniprot
Match: A0A6H5KN31_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN31_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 6.070e-57
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    7 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLILLVRNPIDNQDAWMRYMAGKGQMMREYLPVWQGHISHWLASAGDIPIYVFRYEDMLYRAEDVLR 303
            RPPNATSPILYKSHTPFFPSYNKPSLMPE+TCML+LLVRNPIDN DAW RYMAGK   +R+YLPVWQGH+SHW+A+AGDIPIYVFRYEDML RAE+VLR
Sbjct:  261 RPPNATSPILYKSHTPFFPSYNKPSLMPEDTCMLVLLVRNPIDNHDAWQRYMAGKAPCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLR 359
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BLAST of mRNA_F-distichus_contig104462.397.1 vs. uniprot
Match: A0A6H5KVH5_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH5_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 4.200e-55
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    7 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLILLVRNPIDNQDAWMRYMAGKGQMMREYLPVWQGHISHWLASAGDIPIYVFRYEDMLYRAEDVLR 303
            RPPNATSPILYKSHTPFFPSYNKPSLMPEETCML+LLVRNPIDN DAW RYM  K  ++REYLP+WQGH+SHW+A+AGDIPIYVFRYEDML RAE+VLR
Sbjct:  267 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLVLLVRNPIDNHDAWQRYMYHKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLR 365
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BLAST of mRNA_F-distichus_contig104462.397.1 vs. uniprot
Match: D8LQP3_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP3_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 4.290e-55
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    7 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLILLVRNPIDNQDAWMRYMAGKGQMMREYLPVWQGHISHWLASAGDIPIYVFRYEDMLYRAEDVLR 303
            RPPNATSPILYKSHTPFFPSYNKPSLMPEETCML+LLVRNPIDN DAW RYM  K  ++REYLP+WQGH+SHW+A+AGDIPIYVFRYEDML RAE+VLR
Sbjct:  267 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLVLLVRNPIDNHDAWQRYMYKKSIVVREYLPLWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLR 365
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BLAST of mRNA_F-distichus_contig104462.397.1 vs. uniprot
Match: D8LQP4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP4_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 8.810e-55
Identity = 86/99 (86.87%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    7 RPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLILLVRNPIDNQDAWMRYMAGKGQMMREYLPVWQGHISHWLASAGDIPIYVFRYEDMLYRAEDVLR 303
            RPPNATSPILYKSHTPFFPSYNKPSLMPE+TCML+LLVRNPIDN DAW RYMAGK Q +R+YLPVWQGH+SHW+A+AGDIPIYVFRYEDML RAE+VLR
Sbjct:  996 RPPNATSPILYKSHTPFFPSYNKPSLMPEDTCMLVLLVRNPIDNHDAWQRYMAGKAQCLRDYLPVWQGHLSHWVAAAGDIPIYVFRYEDMLLRAEEVLR 1094
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BLAST of mRNA_F-distichus_contig104462.397.1 vs. uniprot
Match: A0A835YVS2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.410e-34
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:   13 PNATSPILYKSHTPFFPSYNKPSLMPEETCMLILLVRNPIDNQDAWMRYMAGKGQMMREYLPVWQGHISHWLASAGDIPIYVFRYEDMLYRAEDVL 300
            P    P+L KSHTPFFPSY++P+L P  TC ++L+VRNP+D  DAW RY  G  + +R++LPVW GH++HW+A   D+PI  FRYED+L+RA+ VL
Sbjct:  132 PAPDDPVLMKSHTPFFPSYDRPALDPGATCAVLLIVRNPLDAHDAWRRYAGGTAEPLRKWLPVWAGHLTHWVADTRDLPIIAFRYEDLLWRADKVL 227
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104462.397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KN31_9PHAE6.070e-5785.86Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5KVH5_9PHAE4.200e-5584.85Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D8LQP3_ECTSI4.290e-5584.85Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D8LQP4_ECTSI8.810e-5586.87F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YVS2_9STRA5.410e-3455.21P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104462contigF-distichus_contig104462:481..1965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue1.8e-47
Seed eggNOG ortholog2880.D8LQP4
Hectar predicted targeting categoryother localisation
EggNOG OGs2EZ9R@1,2T0MS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.9886262-CDS-F-distichus_contig104462:480..6311622928963.9886262-CDS-F-distichus_contig104462:480..631Fucus distichus monoicousCDSF-distichus_contig104462 481..631 -
1690885084.2982213-CDS-F-distichus_contig104462:480..6311690885084.2982213-CDS-F-distichus_contig104462:480..631Fucus distichus monoicousCDSF-distichus_contig104462 481..631 -
1622928964.0041595-CDS-F-distichus_contig104462:1810..19651622928964.0041595-CDS-F-distichus_contig104462:1810..1965Fucus distichus monoicousCDSF-distichus_contig104462 1811..1965 -
1690885084.307802-CDS-F-distichus_contig104462:1810..19651690885084.307802-CDS-F-distichus_contig104462:1810..1965Fucus distichus monoicousCDSF-distichus_contig104462 1811..1965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104462.397.1prot_F-distichus_contig104462.397.1Fucus distichus monoicouspolypeptideF-distichus_contig104462 481..1965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104462.397.1

>prot_F-distichus_contig104462.397.1 ID=prot_F-distichus_contig104462.397.1|Name=mRNA_F-distichus_contig104462.397.1|organism=Fucus distichus monoicous|type=polypeptide|length=102bp
MNRPPNATSPILYKSHTPFFPSYNKPSLMPEETCMLILLVRNPIDNQDAW
MRYMAGKGQMMREYLPVWQGHISHWLASAGDIPIYVFRYEDMLYRAEDVL
R*
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mRNA from alignment at F-distichus_contig104462:481..1965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104462.397.1 ID=mRNA_F-distichus_contig104462.397.1|Name=mRNA_F-distichus_contig104462.397.1|organism=Fucus distichus monoicous|type=mRNA|length=1485bp|location=Sequence derived from alignment at F-distichus_contig104462:481..1965- (Fucus distichus monoicous)
ATGAACAGGCCACCGAACGCGACGTCGCCGATCCTGTACAAGAGCCACAC
TCCTTTCTTCCCCTCGTACAACAAGCCATCCCTCATGCCCGAGGAGACGT
GTATGCTGATCCTCCTCGTGCGAAATCCCATCGACAATCAAGACGCCTGG
ATGAGGTACGGTAAACGGACTGGAAAGGGGCTATAAAGAAACTCTTTATT
GACCTAGCGACCACAAGAGTAGCCTGTAGTCGATGTGGTACTTATTTATA
GTATTGTCCGCTGCTCTCATTTACTCTGTTTGGCTTGGTTTTGTCTAGTC
ATGGGCCAGACTCAAGTTTTACATATTACATGTTATATTGCATACAGTAT
TCTTTCATGAAGCTGCGGGCTTGCTCTGTTTTGCCTTTGCTGGCTAGGCT
AAGCTAGGCTTTTTTTTTTAACATTATTTTCATTTTCTTGCCTTCTCTCC
CGCTGAAAAGATGAAAATGGAGAGAAATCGTGGGGAACTTTCCGAGAAAC
CAAAGTCATCAAAGATCGAAGGCCCTCCTCAATATCCGTGATTAAAAAAT
ATATTTATGTGTGTGTGTGGCGTCCGGTACGAAAACGATGAAAAAATCTA
GATATAATCATGGAACACTACGGTACAAATCATGAACACGGCGATAAGTA
TGGAACTGGCAAGGGTTTTGTCGCAATTTGGATCCCCGTTAGTTTGAGTA
CAGTAACGCCTCCTTACCATGATTTGACCCGTTGACCTTCGTGTCCCTTT
TAATGACCACGAGCGAGCTTGGCTGACGCGGTAGTTTATTCAGTTGCAAG
GACAATACGCTGAATGTGTGAATCAACAACGACAACAACAACGCTCTGAA
GTACTGCCATAGCCCTCTACCTTTCGCCGTTGCTCTCTCCTATTCTTAAT
CCGTCATAGTCCTTCACTCTGTGTTTTCTAGCTCGTCGTAGATTACGAGC
AGTCGGTCAAATCCTTCACCCCATCCCATCGCTGCTCTGTACATGCCTCG
CAAGTACACGGGCAAATCCTCCGGTTCGTCGCTTTCAGTACACCTTGTAA
CATATAATATAATGTAACATAATGTAACATAATATAGCATGATAGGTGGG
CAGCAAGAGGGTCCGTTTGTGTGGGCATTACCGTGACATCGCCATTACAT
CCGGCGCCAAGAAACTTACTTCACTTTACCTCTCACTCACCCGCTTCCGC
CATATTACAGAGTATAGTATATTCAAGTATATATCTTGGTTCGTACACGG
ACTTGGCAACCAATCCTCCCTCCGTTTTCATGGCTGTTATTGCTTAATTG
CTGCTGCATTGGTTGTGTCTGGCGGGTAGGACAGGTACATGGCCGGAAAG
GGACAGATGATGAGGGAGTATCTTCCCGTGTGGCAGGGGCACATCTCTCA
TTGGCTGGCGTCGGCGGGAGACATCCCCATCTACGTTTTCCGTTACGAGG
ACATGCTGTATAGGGCTGAAGACGTTCTTAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig104462:481..1965-

>mRNA_F-distichus_contig104462.397.1 ID=mRNA_F-distichus_contig104462.397.1|Name=mRNA_F-distichus_contig104462.397.1|organism=Fucus distichus monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at F-distichus_contig104462:481..1965- (Fucus distichus monoicous)
ATGAACAGGCCACCGAACGCGACGTCGCCGATCCTGTACAAGAGCCACAC
TCCTTTCTTCCCCTCGTACAACAAGCCATCCCTCATGCCCGAGGAGACGT
GTATGCTGATCCTCCTCGTGCGAAATCCCATCGACAATCAAGACGCCTGG
ATGAGATGAACAGGCCACCGAACGCGACGTCGCCGATCCTGTACAAGAGC
CACACTCCTTTCTTCCCCTCGTACAACAAGCCATCCCTCATGCCCGAGGA
GACGTGTATGCTGATCCTCCTCGTGCGAAATCCCATCGACAATCAAGACG
CCTGGATGAGGTACATGGCCGGAAAGGGACAGATGATGAGGGAGTATCTT
CCCGTGTGGCAGGGGCACATCTCTCATTGGCTGGCGTCGGCGGGAGACAT
CCCCATCTACGTTTTCCGTTACGAGGACATGCTGTATAGGGCTGAAGACG
TTCTTAGGTGAGTACATGGCCGGAAAGGGACAGATGATGAGGGAGTATCT
TCCCGTGTGGCAGGGGCACATCTCTCATTGGCTGGCGTCGGCGGGAGACA
TCCCCATCTACGTTTTCCGTTACGAGGACATGCTGTATAGGGCTGAAGAC
GTTCTTAGGTGA
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