mRNA_F-distichus_contig10440.395.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10440.395.1
Unique NamemRNA_F-distichus_contig10440.395.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10440.395.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.360e-25
Identity = 54/94 (57.45%), Postives = 76/94 (80.85%), Query Frame = 3 
Query:    3 GYVAATTNAVREGLLSLSNREVGGFRSAAEAAREMMHEDLIPLMASSIATAVQSSGDLSFQKNCLKVLGVGNEYMQQARLTEFVVSQVEDTLME 284
            GYV+A  +AVR+GLLSLSNRE GGFRSAAEAA++MM EDLIPL ASS+A+ V  S + +FQK CL+ LGVG+EY+Q+ RL++ +  ++++ + +
Sbjct:  515 GYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQ 608
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10440.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM1_ECTSI1.360e-2557.45Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10440contigF-distichus_contig10440:6733..8109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.1e-08
Seed eggNOG ortholog2880.D7FMM1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase-like ATPases
EggNOG OGs2E55C@1,2SBZP@2759
Ec32 ortholog descriptionHistidine kinase-like ATPase, C-terminal domain
Ec32 orthologEc-23_000850.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size448
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10440.395.1prot_F-distichus_contig10440.395.1Fucus distichus monoicouspolypeptideF-distichus_contig10440 6837..8059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.8423936-UTR-F-distichus_contig10440:6732..68361622928963.8423936-UTR-F-distichus_contig10440:6732..6836Fucus distichus monoicousUTRF-distichus_contig10440 6733..6836 +
1690885084.2335243-UTR-F-distichus_contig10440:6732..68361690885084.2335243-UTR-F-distichus_contig10440:6732..6836Fucus distichus monoicousUTRF-distichus_contig10440 6733..6836 +
1622928963.902275-UTR-F-distichus_contig10440:8059..81091622928963.902275-UTR-F-distichus_contig10440:8059..8109Fucus distichus monoicousUTRF-distichus_contig10440 8060..8109 +
1690885084.2807248-UTR-F-distichus_contig10440:8059..81091690885084.2807248-UTR-F-distichus_contig10440:8059..8109Fucus distichus monoicousUTRF-distichus_contig10440 8060..8109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.860842-CDS-F-distichus_contig10440:6836..68481622928963.860842-CDS-F-distichus_contig10440:6836..6848Fucus distichus monoicousCDSF-distichus_contig10440 6837..6848 +
1690885084.2455184-CDS-F-distichus_contig10440:6836..68481690885084.2455184-CDS-F-distichus_contig10440:6836..6848Fucus distichus monoicousCDSF-distichus_contig10440 6837..6848 +
1622928963.8740625-CDS-F-distichus_contig10440:7406..74901622928963.8740625-CDS-F-distichus_contig10440:7406..7490Fucus distichus monoicousCDSF-distichus_contig10440 7407..7490 +
1690885084.25871-CDS-F-distichus_contig10440:7406..74901690885084.25871-CDS-F-distichus_contig10440:7406..7490Fucus distichus monoicousCDSF-distichus_contig10440 7407..7490 +
1622928963.8871562-CDS-F-distichus_contig10440:7861..80591622928963.8871562-CDS-F-distichus_contig10440:7861..8059Fucus distichus monoicousCDSF-distichus_contig10440 7862..8059 +
1690885084.2711117-CDS-F-distichus_contig10440:7861..80591690885084.2711117-CDS-F-distichus_contig10440:7861..8059Fucus distichus monoicousCDSF-distichus_contig10440 7862..8059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10440.395.1

>prot_F-distichus_contig10440.395.1 ID=prot_F-distichus_contig10440.395.1|Name=mRNA_F-distichus_contig10440.395.1|organism=Fucus distichus monoicous|type=polypeptide|length=98bp
MMHEDLIPLMASSIATAVQSSGDLSFQKNCLKVLGVGNEYMQQARLTEFV
VSQVEDTLMEEEERRAAAKARAAARREEKAQEARKASTRRKQQTKNS*
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mRNA from alignment at F-distichus_contig10440:6733..8109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10440.395.1 ID=mRNA_F-distichus_contig10440.395.1|Name=mRNA_F-distichus_contig10440.395.1|organism=Fucus distichus monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at F-distichus_contig10440:6733..8109+ (Fucus distichus monoicous)
AGGGTTACGTAGCTGCGACAACCAACGCCGTCCGTGAAGGGTTACTCTCG
CTGAGCAACCGCGAGGTGGGCGGTTTTCGATCTGCCGCGGAGGCGGCCAG
GGAGATGATGCACGAGGTTTGACATTTTTCACGACAGACTATATCCCCAC
CCCTTTTCACACCAAACCGACGTTTTCAGAGGAAAGAATACGTTTACATA
TATATCTACGGTATGTAGTGTTAAAGAAATAGCAGCAATAATACTAAAAA
GCATTCGAGATTCGAGCGGCATCGAAAGCTGCAACAACAACGGAAGTGCG
CAGCCTATGTTTCCACCTGTCTTGATATGATATTTTCCCCCCGCTTTTGC
GAGGGAATGCTCAGAAGGTTTAGATGCGTTCAGATTTTTCTTTAAACGGA
AGTTTATGCTTGTCAGTTAGAAGGCGATCTGCGCAGTGTTTGCCCAGTAT
TGCTATGCTTGTGGAAAGGACCGCTATGGAGAAAATTCTGGGGGGAAAGC
AGCTATTATGTTAACACTCTTTCGGTTCCTACAATATTACTGTATCACGG
GGTTATAATCAGGGCGAAGGACTTGCGTCTGTCACCCTTTATCGTGCACC
ATACGACCACTTGAACGCTAACGGTTAAACGGTTAGTGTCGGTTTCCAAT
TCGGGGTGTCGACACGGTCTACAGGATTTAATTCCGCTTATGGCCTCAAG
CATAGCGACTGCCGTACAAAGCAGCGGGGACTTGTCGTTCCAGAAGAACT
GTCTTAAGGTGAGTATCTCCGGTTGTCGCCGAAGGCAGCGGTAGGTCTGC
GTCTAGCCATACAGTTACTGTTGTTGCGACCCATTGATAATATACTACTA
GCAAAAACGTTGATTACGCGCTGAGCAGTCAACGCTGCCAAACAAATTTC
AGGATTGATTGCGATACTGTAGGCTTAGGATAGATGATGCCGAAAGTCGT
TGGTCCAATGCACTCATTCTGGTCTATTCAGTTTGAAAATTGGCATTTTA
CGGAACCACTGTAGATCTTTACAGTGAGCACCGTTCCAGGCACTACTTCC
AGTATGGACAGCCTCAGGGCCAAACACGCCCCTTCCATCTCAAAGCAAAT
CGGATTGCACATTCCGCACTCCAACTAAGGTGCTCGGCGTAGGGAATGAG
TACATGCAGCAGGCGCGACTCACCGAGTTCGTAGTGTCTCAAGTGGAAGA
CACACTGATGGAGGAGGAAGAACGCCGCGCCGCGGCAAAGGCGCGAGCGG
CTGCGCGAAGAGAAGAAAAGGCCCAGGAGGCACGGAAGGCCAGCACACGG
AGGAAACAACAAACCAAAAACTCCTGAAAAGGGCGCACAGCCTTTGCTAC
AACGATATCGTGCAAGTGCTCGACAAA
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Coding sequence (CDS) from alignment at F-distichus_contig10440:6733..8109+

>mRNA_F-distichus_contig10440.395.1 ID=mRNA_F-distichus_contig10440.395.1|Name=mRNA_F-distichus_contig10440.395.1|organism=Fucus distichus monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at F-distichus_contig10440:6733..8109+ (Fucus distichus monoicous)
ATGATGCACGAGATGATGCACGAGGATTTAATTCCGCTTATGGCCTCAAG
CATAGCGACTGCCGTACAAAGCAGCGGGGACTTGTCGTTCCAGAAGAACT
GTCTTAAGGATTTAATTCCGCTTATGGCCTCAAGCATAGCGACTGCCGTA
CAAAGCAGCGGGGACTTGTCGTTCCAGAAGAACTGTCTTAAGGTGCTCGG
CGTAGGGAATGAGTACATGCAGCAGGCGCGACTCACCGAGTTCGTAGTGT
CTCAAGTGGAAGACACACTGATGGAGGAGGAAGAACGCCGCGCCGCGGCA
AAGGCGCGAGCGGCTGCGCGAAGAGAAGAAAAGGCCCAGGAGGCACGGAA
GGCCAGCACACGGAGGAAACAACAAACCAAAAACTCCTGAGTGCTCGGCG
TAGGGAATGAGTACATGCAGCAGGCGCGACTCACCGAGTTCGTAGTGTCT
CAAGTGGAAGACACACTGATGGAGGAGGAAGAACGCCGCGCCGCGGCAAA
GGCGCGAGCGGCTGCGCGAAGAGAAGAAAAGGCCCAGGAGGCACGGAAGG
CCAGCACACGGAGGAAACAACAAACCAAAAACTCCTGA
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