mRNA_F-distichus_contig10437.393.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10437.393.1
Unique NamemRNA_F-distichus_contig10437.393.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10437.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10437contigF-distichus_contig10437:5005..8907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_003890.1
Exons2
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.5086844-CDS-F-distichus_contig10437:5006..51531622928963.5086844-CDS-F-distichus_contig10437:5006..5153Fucus distichus monoicousCDSF-distichus_contig10437 5007..5153 -
1690885084.150636-CDS-F-distichus_contig10437:5006..51531690885084.150636-CDS-F-distichus_contig10437:5006..5153Fucus distichus monoicousCDSF-distichus_contig10437 5007..5153 -
1622928963.5238-CDS-F-distichus_contig10437:8736..89071622928963.5238-CDS-F-distichus_contig10437:8736..8907Fucus distichus monoicousCDSF-distichus_contig10437 8737..8907 -
1690885084.1603074-CDS-F-distichus_contig10437:8736..89071690885084.1603074-CDS-F-distichus_contig10437:8736..8907Fucus distichus monoicousCDSF-distichus_contig10437 8737..8907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10437.393.1prot_F-distichus_contig10437.393.1Fucus distichus monoicouspolypeptideF-distichus_contig10437 5007..8907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10437.393.1

>prot_F-distichus_contig10437.393.1 ID=prot_F-distichus_contig10437.393.1|Name=mRNA_F-distichus_contig10437.393.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
GERGERELDKVRKAKTAIQDSGGMPACREKGRVEPASLRSQEGLDGCDRG
RDGEKIEYLHGTVNFPRATLVSCSKNTSKGKTLNTSGSVGGLDHLERIEL
KRAFYE
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mRNA from alignment at F-distichus_contig10437:5005..8907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10437.393.1 ID=mRNA_F-distichus_contig10437.393.1|Name=mRNA_F-distichus_contig10437.393.1|organism=Fucus distichus monoicous|type=mRNA|length=3903bp|location=Sequence derived from alignment at F-distichus_contig10437:5005..8907- (Fucus distichus monoicous)
GGCGAGAGGGGCGAGAGGGAGCTGGACAAGGTCCGGAAGGCGAAAACAGC
GATCCAAGATTCCGGAGGAATGCCTGCCTGCCGCGAAAAGGGTAGGGTGG
AACCAGCATCGCTTCGTAGTCAGGAAGGTTTGGATGGGTGTGACCGAGGT
CGAGATGGGGAAAAAATCGAGGTGAGGCCTAGACCGGAGAAGGCATTTGT
TCTCCCGAGTATATCACTATTAAATAAGACATGTAAACCCGCGACCCCGA
CGGCGCGATTTTTTTTTTCTGTTTTCACGGACGATGCTTGGTATGTTCGA
TCTATGGCAATTCATCACACCCCCACCTGGTTGCCATGGTAACCGTTCCT
GCCCGTCTTCAAACTCCGTACCTCGGTTCTTTCTCGGCGTGAGGAGAGGA
GCACGACGATGGTTCCTTTCTTCGGCACTCATTTTTTTGTATGTCATTAC
ATGCAGTCAGTCCGATCGAAGTTAAAGAAAGGACTCTACCCACGATAGGA
TGGCAGGCCTCACGAGAGGGAGTGTGTGTGGCTAGTGCTTGGTTTGCTTG
GTAGGGTAAGGAAAACACACTGATATTAGGGGGTTATGGGCACGGGAGTC
CTAGATGACTCTCCAAAGTCTTACACAGGCATGCAACAAAATAAGTGAGC
AAACCTATCCTGGCCCCTATTGGTCAACATAAAACTACTCCATCCGCATT
AGGAGTCAACAACGTTCAACCCCCCTTCCGAGTGATGGGATGTATACCTA
AATAGCCCCCCAAAACCTTAGTATCCTTCGAGACTTAAGCCAGTCCCTCA
GCTGTGTCACAACACAAGCATTCACACAACATGCACAAAAACATGCACAA
ATCAACATGCACAAATCAAGCCGTCGATCTATCGCAAAGATAAAACAAAC
TCATTAAGCACTTAAATTCATTAAGAAACTTCGGTGGGTTGCGAACACAT
CGAATGCTTCGCTACAATGTCCGCATGCTGATATTCAGAAGAAACGTACT
GAAATGTCCTCCTGGGGAACAAGCTCTCAAAGGAAACTTACTGTATTCGG
AACTTTGACACTCAAAACATACTCAAATGTTATTCGGCATACTTTGCTAT
CAATCATAGCGGTCGCCATCTAGGGCTTTAGTGATACGTAATCTCGCATC
ACATGCTCTATATTAACCAAACAATTGCAAATGTTTAGAATTGTCCCAAC
AACTCTTTGCAAACACATGGAATTGGCATGCCGTGCGGCCAAAATCTAGC
TATTGATATCTGATGTATTACAAGATATATCATCTACTATTCTATGCGGG
CAACTAAATTATTCCTACTACATTGGCAGAAAATAGCCCTCACTATAAAG
GATTAGGACAAAAAAGACGATTTAGTTATCACGGTATCGCATTCAAATGA
AATTACAAAGATCAAAAGTCGCTGGTAGAGACGAATGGAAAGCATGGCTT
CGATCTCAAAAACATTCATTTATTCTCGTAATATATATTTTTCAAAGAGA
TTGGTGAGGGGATTACCTCCTTTCCCTCAGGCCGACATCGGGTCCAATAG
CTTGCGGGGACATTCCCTCCTCCCCGGTGACCACTCAGGTCCAGTAGCTA
GCGGGGGCATACCTCTTCCTCCCTTTGACCACGACACAGGTCCAATAGCT
GGCGAGGGCATTACTTCCTCCCCTATCCACGACTCAGGTACCTGCCTAGT
GACTCAAATATCATATCCTGCTTTGTATAGAGTTTAACCGAGGCCTCATT
CCACCTCAGGGATGAGTGTTAGAAGAGGTAAATATCAGCCTTTTCTAAGC
TCAACCAGTTATATTATTACTTTGAATTTCAGTCATTTTCCATTACCGTA
ACGACTTAGCGCTTCTTGTTTCCTAAACGAAGGGTCAAATTCCAAGTAAT
AGTACTGTAGAAGTTTTACTTTATTATAGACATTGATCCTGTAAATGAAC
GACGTAGACAAGCTCTTCATAGTTGCGTTCAAGTGCAATGATTTTTTAGC
GGGATAATTGGGACGATATAGTAGGGTCTCGTCCCCACTTGTACATATTT
ACAGGTTACACCATGAATGTTTAGAACCAATTAACAATCGTAGCTACCTC
TTAATACCAAATAATGCTTAACAGACTACTACTTCGACAACATCACAAAG
GGTCGAGGTCGATGAAAAATGATCTGCCTACAAATAGATCAAGACAATGT
TATGAGATTTTTCTATTCTGGTCATCAACGTACCATACTCAGTCCATGTG
GAACGATGGGATAACTTATACACTGCATAACGAACGTCATGTTGGTAAGC
AAGTAATGTCGACAGCATAGTACTACTTCGGCTGCAACAAGAATACAGTG
CTTTAAAATAGAGATTTGCGGAGGAATATCACAGCTCACGAGATAAAAAC
AGTTAGGTAAACAGCGGTACAACAGTTGAGTTCAGAACTTTGGGGTTCAA
GTTCTCAAAAACAGCCCTCACTGAACATAAAATACCCGCTTCAAGAGGAA
GAAAGGCTACGCGCGGATATCCTAATGCATAAACGTACAGAACGTGCGAG
AAAGTCGGAACTATACGGGGTATTACTTTTCTGCATTACTGCGGTACAAA
AGAGCTTACGTAACCCTATGAAATCAGCATACCACAACTGTAGCAGATGA
TGAGGCATGAGCAGGTGACGTCCAGAAAACGGGTGTGTTGTCAAGCTGCT
CGTTCCATGACGCCCCCCGACAACCGATCGCCCCTAGCTTCCAATCATCT
CGAGCCGCCCTTGACGGCATGACCTCCGTTCGTCCCTACAGCTCCTATAG
TCTCGAGCCGCCCTCGACGACATGCCCTTACTCTGGCACGGCGTAAACAT
TTTCCCCGTACCGCTTCTGAAATCACGATCCCCCCCAAAATGCTGCAGCC
TCATTCAGCCCTAATATGAACCTCCCCACAAAGCAACGCACGCCACGATC
CCACAAGCGGGCAGGCGCGGAAGCAAATCCATTATCCCTCAGTCCATGAA
GCCCTTGGCTGATGTCCAAGTCGAAATTACCTCCAAAGACATGCTGAAGA
TTGACGAAAATAAGGTTTCTAGGACAACGCTTATAATAGCGTGCCTCTCG
CTGCCATGCTTCACGGTGGGTTGTAGCTAGTCTAGCCAAACAACCTTTAC
GCTAGCGTAAATGAAGGACTCTGCCCACGATAGGATAGCAGGTCTTACGA
GAGAAAGTGTGTGTGATTGGTGCTTGGTTTGCTTGGTAGAGAAATGAAAA
CACACTGATATTAGGGGGCATGGGCACGGGAGTCCTCCAGATGACTCTCA
CAAGTCTTACACAGGCATGCAACAAAATAAGTGAACAAACTTATCCTGGT
CCCCTATTGGTCAACACACAACTACTCTATCCGCATCGGGAGTCAACAAC
CATCAGGAGTCACTCAACATTGTAACAGTTACTACTGTTGTTGTGGTGAC
TCAGGGCAGTGCGTGCAGAGGCTGATCAAGGAGGGAAAATAGATGATACC
CTTGAAACAAAATGATGGGCTGGGCAGACCTTTTGAAGATACACGATGGA
AGTTCGACCAATCAGCTACAAGACAGACTGCACTGGTACCGATGCTTACG
ACGACGGAGTTCTCGACGACCAATAATGTCGCCAATGAAAGACAAGTAGT
ACATTTCAACACACCGTACGTCACCAACTCCCTCTTTATGAGAGGCTCCC
AGCCCCTCCCCTGCCATGTGACTGCGACGCAATGCCACCTATCGATCCGC
ACAGTACCTCCACGGAACGGTGAATTTTCCGAGAGCAACCCTTGTATCCT
GCAGCAAGAATACAAGCAAGGGTAAGACTCTAAACACCAGCGGTAGTGTT
GGAGGGCTGGACCACTTGGAAAGGATCGAGCTCAAGAGAGCTTTTTATGA
GGC
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Coding sequence (CDS) from alignment at F-distichus_contig10437:5005..8907-

>mRNA_F-distichus_contig10437.393.1 ID=mRNA_F-distichus_contig10437.393.1|Name=mRNA_F-distichus_contig10437.393.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig10437:5005..8907- (Fucus distichus monoicous)
GGCGAGAGGGGCGAGAGGGAGCTGGACAAGGTCCGGAAGGCGAAAACAGC
GATCCAAGATTCCGGAGGAATGCCTGCCTGCCGCGAAAAGGGTAGGGTGG
AACCAGCATCGCTTCGTAGTCAGGAAGGTTTGGATGGGTGTGACCGAGGT
CGAGATGGGGAAAAAATCGAGGGCGAGAGGGGCGAGAGGGAGCTGGACAA
GGTCCGGAAGGCGAAAACAGCGATCCAAGATTCCGGAGGAATGCCTGCCT
GCCGCGAAAAGGGTAGGGTGGAACCAGCATCGCTTCGTAGTCAGGAAGGT
TTGGATGGGTGTGACCGAGGTCGAGATGGGGAAAAAATCGAGTACCTCCA
CGGAACGGTGAATTTTCCGAGAGCAACCCTTGTATCCTGCAGCAAGAATA
CAAGCAAGGGTAAGACTCTAAACACCAGCGGTAGTGTTGGAGGGCTGGAC
CACTTGGAAAGGATCGAGCTCAAGAGAGCTTTTTATGAGTACCTCCACGG
AACGGTGAATTTTCCGAGAGCAACCCTTGTATCCTGCAGCAAGAATACAA
GCAAGGGTAAGACTCTAAACACCAGCGGTAGTGTTGGAGGGCTGGACCAC
TTGGAAAGGATCGAGCTCAAGAGAGCTTTTTATGAG
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