mRNA_F-distichus_contig104340.391.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104340.391.1
Unique NamemRNA_F-distichus_contig104340.391.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 8.480e-25
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            RA+IL+GSE+   +LVC   TPEQWAEWLRAPLEHAAA A+++LV+KLL AGANG  G  GC G+TLL AAAEGG+ +V
Sbjct:   10 RANILRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQV 88
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: D7G2A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.800e-23
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLG-RTLLDAAAEGGSEKV 237
            RA I+Q   + I KLVC   T EQW+EWLRAPLEHAAA ANYELV KLL+AGANG A  RGC   +TLL AAAEGG   V
Sbjct:    2 RARIMQDLGDTIFKLVCDRVTAEQWSEWLRAPLEHAAATANYELVSKLLRAGANGGASWRGCHDDKTLLHAAAEGGDALV 81
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: A0A6H5JXY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY4_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.950e-23
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEK 234
            RA IL  + ++I +L+C   T EQWAEWLRAPLEHAA  AN +LVEKLLKAGANG AG RGC   TLL AAAEGG+E+
Sbjct:   13 RAKILGDAADMIFELMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGANGSAGRRGCDDNTLLHAAAEGGNEE 90
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.650e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            + ++L+G+E  I KL+  G TPEQWAEWLRAPLEHAAA+ N  LVE+LL AGANG AG RGC GRT+LDAAA GG+  V
Sbjct:    6 KRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDV 84
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.180e-22
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            RASILQ   + I KLVC   TPEQWAEWLRAPLEHAA   N +LV+KLL AGAN  AG RGC G+TLL AAAEGG+  V
Sbjct:    7 RASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTLLHAAAEGGNVHV 85
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.380e-22
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            RA  L  +  +I KL+C   T EQWAEWLRAPLEHAA  AN +LVEKLLKAGA+G AG RGC  +TLL AAAEGG+E+V
Sbjct:   11 RAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEV 89
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.390e-22
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    7 SILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            S+L+G E  I KLV  G TPEQWAEWLR PLEHAAA  N +LV KLLKAGA+G+AG RGC  RTLLDAA  GG+  V
Sbjct:    8 SLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWRGCGDRTLLDAALSGGNAGV 84
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.920e-22
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            R+SILQ   +   KLV    TP+QWAEWLRAPLEHAAA  N +LV+KLL AGANG AG RGC G+TLL AAAEGG+ +V
Sbjct:   49 RSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQV 127
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 5.070e-22
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:   10 ILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            +LQG E  I KLV  G TP+QW EWLR PLEHAAA+ N  LV  LL+AGA+G AG RGCL RTL+DAAA GGSE V
Sbjct:    9 LLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPV 84
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BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Match: D7FM65_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.020e-21
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLKAGANGKAGSRGCLGRTLLDAAAEGGSEKV 237
            R S L G+ ++I+ LVC   TP QW +WLR PLEHAA   N  LVEKLLK GAN  AG RGC GRTL+ A AEGGSE+V
Sbjct:    7 RKSTLHGTGDMILDLVCDLATPRQWTKWLRVPLEHAAGTGNAALVEKLLKVGANASAGWRGCDGRTLMHAGAEGGSEQV 85
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104340.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN3_ECTSI8.480e-2567.09Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]
D7G2A9_ECTSI3.800e-2366.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXY4_9PHAE3.950e-2366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1F4_9PHAE7.650e-2365.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2A3_ECTSI1.180e-2268.35Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FQP1_ECTSI1.380e-2265.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K513_9PHAE2.390e-2267.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ7_ECTSI3.920e-2265.82F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
D8LRS0_ECTSI5.070e-2267.11Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FM65_ECTSI1.020e-2162.03Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104340contigF-distichus_contig104340:494..733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog2880.D7FPN3
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.3697264-CDS-F-distichus_contig104340:493..7331622928963.3697264-CDS-F-distichus_contig104340:493..733Fucus distichus monoicousCDSF-distichus_contig104340 494..733 -
1690885084.0966868-CDS-F-distichus_contig104340:493..7331690885084.0966868-CDS-F-distichus_contig104340:493..733Fucus distichus monoicousCDSF-distichus_contig104340 494..733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104340.391.1prot_F-distichus_contig104340.391.1Fucus distichus monoicouspolypeptideF-distichus_contig104340 494..733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104340.391.1

>prot_F-distichus_contig104340.391.1 ID=prot_F-distichus_contig104340.391.1|Name=mRNA_F-distichus_contig104340.391.1|organism=Fucus distichus monoicous|type=polypeptide|length=80bp
RASILQGSEELIVKLVCGGTTPEQWAEWLRAPLEHAAAQANYELVEKLLK
AGANGKAGSRGCLGRTLLDAAAEGGSEKV*
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mRNA from alignment at F-distichus_contig104340:494..733-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104340.391.1 ID=mRNA_F-distichus_contig104340.391.1|Name=mRNA_F-distichus_contig104340.391.1|organism=Fucus distichus monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at F-distichus_contig104340:494..733- (Fucus distichus monoicous)
CGGGCCAGCATTCTGCAAGGATCGGAGGAGCTGATCGTGAAACTCGTGTG
TGGGGGAACCACGCCGGAGCAGTGGGCGGAATGGCTTCGTGCGCCGCTGG
AGCATGCTGCGGCACAGGCAAACTATGAGCTAGTGGAGAAGCTCCTGAAG
GCTGGCGCGAATGGAAAAGCAGGATCGCGCGGGTGCCTTGGGCGAACGCT
TCTAGATGCGGCAGCCGAAGGAGGAAGCGAGAAGGTGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig104340:494..733-

>mRNA_F-distichus_contig104340.391.1 ID=mRNA_F-distichus_contig104340.391.1|Name=mRNA_F-distichus_contig104340.391.1|organism=Fucus distichus monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at F-distichus_contig104340:494..733- (Fucus distichus monoicous)
CGGGCCAGCATTCTGCAAGGATCGGAGGAGCTGATCGTGAAACTCGTGTG
TGGGGGAACCACGCCGGAGCAGTGGGCGGAATGGCTTCGTGCGCCGCTGG
AGCATGCTGCGGCACAGGCAAACTATGAGCTAGTGGAGAAGCTCCTGAAG
GCTGGCGCGAATGGAAAAGCAGGATCGCGCGGGTGCCTTGGGCGAACGCT
TCTAGATGCGGCAGCCGAAGGAGGAAGCGAGAAGGTGTGACGGGCCAGCA
TTCTGCAAGGATCGGAGGAGCTGATCGTGAAACTCGTGTGTGGGGGAACC
ACGCCGGAGCAGTGGGCGGAATGGCTTCGTGCGCCGCTGGAGCATGCTGC
GGCACAGGCAAACTATGAGCTAGTGGAGAAGCTCCTGAAGGCTGGCGCGA
ATGGAAAAGCAGGATCGCGCGGGTGCCTTGGGCGAACGCTTCTAGATGCG
GCAGCCGAAGGAGGAAGCGAGAAGGTGTGA
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