mRNA_F-distichus_contig104320.390.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104320.390.1
Unique NamemRNA_F-distichus_contig104320.390.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104320.390.1 vs. uniprot
Match: D7G3Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.560e-18
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:   10 GEAQKAYQKLVNALFKHIEDVASSNPKYEHMVRLENYHFFAATIRQIKV 156
            GEAQKAYQ+LV ALF+H+E+VAS NPKYEHMVRLENYHFFAAT+R +KV
Sbjct:  915 GEAQKAYQRLVIALFEHVEEVASRNPKYEHMVRLENYHFFAATMRPLKV 963
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104320.390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y9_ECTSI2.560e-1881.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104320contigF-distichus_contig104320:1411..1584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog2880.D7G3Y9
KEGG koko:K18412,ko:K19983
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000145,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016192,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0031267,GO:0031503,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0046903,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051601,GO:0051641,GO:0070727,GO:0071944,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936
EggNOG free text desc.exocyst localization
EggNOG OGsKOG2148@1,KOG2148@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036,ko04131
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.327578-CDS-F-distichus_contig104320:1410..15841622928963.327578-CDS-F-distichus_contig104320:1410..1584Fucus distichus monoicousCDSF-distichus_contig104320 1411..1584 -
1690885084.0855753-CDS-F-distichus_contig104320:1410..15841690885084.0855753-CDS-F-distichus_contig104320:1410..1584Fucus distichus monoicousCDSF-distichus_contig104320 1411..1584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104320.390.1prot_F-distichus_contig104320.390.1Fucus distichus monoicouspolypeptideF-distichus_contig104320 1411..1584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104320.390.1

>prot_F-distichus_contig104320.390.1 ID=prot_F-distichus_contig104320.390.1|Name=mRNA_F-distichus_contig104320.390.1|organism=Fucus distichus monoicous|type=polypeptide|length=58bp
GQHGEAQKAYQKLVNALFKHIEDVASSNPKYEHMVRLENYHFFAATIRQI
KVTEHALP
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mRNA from alignment at F-distichus_contig104320:1411..1584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104320.390.1 ID=mRNA_F-distichus_contig104320.390.1|Name=mRNA_F-distichus_contig104320.390.1|organism=Fucus distichus monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at F-distichus_contig104320:1411..1584- (Fucus distichus monoicous)
GGGCAGCACGGAGAGGCTCAGAAGGCCTACCAGAAGCTAGTGAACGCGCT
GTTCAAGCACATCGAGGACGTGGCCTCCAGCAACCCCAAATACGAGCACA
TGGTCCGGCTCGAGAACTACCACTTTTTCGCGGCTACGATACGCCAGATC
AAGGTGACAGAACACGCCCTTCCC
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Coding sequence (CDS) from alignment at F-distichus_contig104320:1411..1584-

>mRNA_F-distichus_contig104320.390.1 ID=mRNA_F-distichus_contig104320.390.1|Name=mRNA_F-distichus_contig104320.390.1|organism=Fucus distichus monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at F-distichus_contig104320:1411..1584- (Fucus distichus monoicous)
GGGCAGCACGGAGAGGCTCAGAAGGCCTACCAGAAGCTAGTGAACGCGCT
GTTCAAGCACATCGAGGACGTGGCCTCCAGCAACCCCAAATACGAGCACA
TGGTCCGGCTCGAGAACTACCACTTTTTCGCGGCTACGATACGCCAGATC
AAGGTGACAGAACACGCCCTTCCCGGGCAGCACGGAGAGGCTCAGAAGGC
CTACCAGAAGCTAGTGAACGCGCTGTTCAAGCACATCGAGGACGTGGCCT
CCAGCAACCCCAAATACGAGCACATGGTCCGGCTCGAGAACTACCACTTT
TTCGCGGCTACGATACGCCAGATCAAGGTGACAGAACACGCCCTTCCC
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