mRNA_F-distichus_contig10430.385.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE) HSP 1 Score: 180 bits (457), Expect = 3.630e-53 Identity = 87/123 (70.73%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 4 MCPAADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
M PAA+P++SGQPGCTPAE+ RHS+LL GGGL+DAYR L P A+ A T+T G+TWRGTAGN+VAA GR+YGKGMRIDYFL S LAPR+ EVKVFGSGADR+GFLGSDH PL+LTL
Sbjct: 270 MFPAANPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVPAAGAGDAG--TETEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTVLAPRIKEVKVFGSGADRDGFLGSDHCPLMLTL 390
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7S0JJC5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJC5_9EUKA) HSP 1 Score: 107 bits (266), Expect = 5.810e-27 Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 28 NSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
+ GQPG T E+ R + LL G GL+DAYR L P A TD +TWRG G A GR+Y KGMRIDY LTS +L PR+ V G+G +R GFLGSDH PL++ L
Sbjct: 40 DKGQPGFTANEQTRFAALLKAG-GLVDAYRQLHPTANWQTD----------VTWRGAPGINNPAEGRYYNKGMRIDYVLTSQSLVPRIKSAVVHGTGPERSGFLGSDHCPLIVEL 143
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: R1D0C8_EMIHU (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D0C8_EMIHU) HSP 1 Score: 109 bits (272), Expect = 7.990e-26 Identity = 63/121 (52.07%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 13 AADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNE-VAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
AA + GQPG TP E+ R LLA G GL+DAYR L P A +TD +TWRG AG + AAGR+Y KGMRIDY L LA V +V G GA+R GFLGSDH PLL+ L
Sbjct: 246 AAHADDRGQPGFTPNEQARFRSLLAAG-GLVDAYRTLHPVANWATD----------VTWRGCAGKDGPPAAGRYYAKGMRIDYVLVDRRLAGSVVRAEVLGGGAERRGFLGSDHCPLLVEL 355
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A516AG33_LINPO (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG33_LINPO) HSP 1 Score: 100 bits (249), Expect = 1.060e-22 Identity = 58/123 (47.15%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 13 AADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPG---ITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
A P+N G PG + ERER S+L G GL DA+R L R E+ PG TWRGT + R+ G G R+DYFL S LAPR+A ++ G GA REGFLGSDH P+LL L
Sbjct: 250 ATPPENRGIPGFSDGERERFSRLFTAG-GLFDAWRRLH--------RVGETPPEPGDAAFTWRGTPAVQSRFRARYEGMGQRLDYFLLSEALAPRLARCEILGRGAGREGFLGSDHCPVLLEL 363
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A6U5AHS1_HEMAN (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5AHS1_HEMAN) HSP 1 Score: 92.8 bits (229), Expect = 7.800e-20 Identity = 54/118 (45.76%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 19 DPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
D + GQPG T E++R + +L GL+DA+RH PA DR S + TWRGT AA R++ KGMRIDY L S +L PRV + G G+ R GF GSDH P+ LTL
Sbjct: 258 DYNDGGQPGYTFNEQDRFTGILQ-ESGLVDAFRHANPADEPCNDRGSANW-----TWRGTG----AATDRYHNKGMRIDYTLVSSSLLPRVQSALILGHGSQRVGFCGSDHCPITLTL 365
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7S1NTG2_9EUGL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NTG2_9EUGL) HSP 1 Score: 90.9 bits (224), Expect = 1.050e-19 Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 7 CPAADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPR--VAEVKVFGSGADREGFLGSDHSPLLLTL 372
CP A ++ GQPG TP E++R + +L G GL+D YRHL P ++ TWRG+ ++YG+GMRIDY L S L R V E +V G GA+R GF+GSDHSP++L L
Sbjct: 159 CPTAT-EDVGQPGFTPREQQRFAAILEAG-GLVDTYRHLHPEPSADD-----------YTWRGSP----PVYAKYYGRGMRIDYALMSRPLVNRLGVRESRVVGRGAERGGFMGSDHSPVVLVL 265
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7J6P9K2_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P9K2_PEROL) HSP 1 Score: 88.6 bits (218), Expect = 2.220e-19 Identity = 54/121 (44.63%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 34 GQPGCTPAERERH------SQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGN--EVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
GQPG T AE++R ++LL G GLIDAYRH P D TWRG G GRFYGKGMRIDY L ++ V V+ G G +R+GF+GSDH+PLL T+
Sbjct: 50 GQPGFTKAEQDRQVGVQPFAELLKTG-GLIDAYRHCHPDEDWEKD----------ATWRGAPGKPPNPPEFGRFYGKGMRIDYVLVPESMTKDVQSVENLGIGKERKGFMGSDHAPLLTTI 159
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7J6M3C5_PERCH (Poly(A)-specific ribonuclease PARN n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6M3C5_PERCH) HSP 1 Score: 89.4 bits (220), Expect = 2.980e-18 Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 34 GQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNE--------VAAA----GRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
GQPG T AE++R S LL G GLIDAYR PA D TWRG G ++++ GRFYGKGMRIDY L ++ + V G G +R+GF+GSDH+PLL T+
Sbjct: 934 GQPGFTKAEQDRFSDLLDAG-GLIDAYRQCHPAEDWDKD----------ATWRGAPGKPPNPPDCKIISSSNDRYGRFYGKGMRIDYVLVPESMKDDIVSVDNLGVGKERKGFMGSDHAPLLATI 1047
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A812QKL5_SYMPI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QKL5_SYMPI) HSP 1 Score: 86.3 bits (212), Expect = 1.200e-17 Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 1 RMCPAADPKNS-GQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
+ C DP++ GQPG T ER R +LL G L+DAYR L PA + A+ P TWRG A +++ KGMRIDY L + + R+ + G GADR GFLGSDH PL LTL
Sbjct: 179 QQCYQGDPEDMRGQPGFTEGERRRFKELLETG-RLVDAYRQLHPA--NDVPPAAG----PYFTWRGHPPVHQNVA-KYHAKGMRIDYALVAEEILSRLEACDILGQGADRNGFLGSDHCPLRLTL 295
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A812IK21_9DINO (APE1L protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IK21_9DINO) HSP 1 Score: 85.9 bits (211), Expect = 3.120e-17 Identity = 55/125 (44.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 1 RMCPAADPKNS-GQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
+ C +P + GQPG T ER R +LL G L+DAYR L P S D S + P TWRG A +++GKGMRIDY L + + R+ + G GADR GFLGSDH PL TL
Sbjct: 257 QQCYQGEPADMRGQPGFTEGERRRFKELLVTG-KLVDAYRRLHP----SDDVPSAAG--PYFTWRGHPPVHQTVA-KYHGKGMRIDYALVAEEMLTRLEACDILGQGADRNGFLGSDHCPLRCTL 373 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10430.385.1 >prot_F-distichus_contig10430.385.1 ID=prot_F-distichus_contig10430.385.1|Name=mRNA_F-distichus_contig10430.385.1|organism=Fucus distichus monoicous|type=polypeptide|length=123bp MCPAADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRback to top mRNA from alignment at F-distichus_contig10430:8889..9657- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10430.385.1 ID=mRNA_F-distichus_contig10430.385.1|Name=mRNA_F-distichus_contig10430.385.1|organism=Fucus distichus monoicous|type=mRNA|length=769bp|location=Sequence derived from alignment at F-distichus_contig10430:8889..9657- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10430:8889..9657- >mRNA_F-distichus_contig10430.385.1 ID=mRNA_F-distichus_contig10430.385.1|Name=mRNA_F-distichus_contig10430.385.1|organism=Fucus distichus monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at F-distichus_contig10430:8889..9657- (Fucus distichus monoicous)back to top |