mRNA_F-distichus_contig10430.385.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10430.385.1
Unique NamemRNA_F-distichus_contig10430.385.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.630e-53
Identity = 87/123 (70.73%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    4 MCPAADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            M PAA+P++SGQPGCTPAE+ RHS+LL  GGGL+DAYR L P  A+    A   T+T G+TWRGTAGN+VAA GR+YGKGMRIDYFL S  LAPR+ EVKVFGSGADR+GFLGSDH PL+LTL
Sbjct:  270 MFPAANPEDSGQPGCTPAEKRRHSRLLESGGGLVDAYRRLNPVPAAGAGDAG--TETEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTVLAPRIKEVKVFGSGADRDGFLGSDHCPLMLTL 390          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7S0JJC5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJC5_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 5.810e-27
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   28 NSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            + GQPG T  E+ R + LL  G GL+DAYR L P A   TD          +TWRG  G    A GR+Y KGMRIDY LTS +L PR+    V G+G +R GFLGSDH PL++ L
Sbjct:   40 DKGQPGFTANEQTRFAALLKAG-GLVDAYRQLHPTANWQTD----------VTWRGAPGINNPAEGRYYNKGMRIDYVLTSQSLVPRIKSAVVHGTGPERSGFLGSDHCPLIVEL 143          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: R1D0C8_EMIHU (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D0C8_EMIHU)

HSP 1 Score: 109 bits (272), Expect = 7.990e-26
Identity = 63/121 (52.07%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   13 AADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNE-VAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            AA   + GQPG TP E+ R   LLA G GL+DAYR L P A  +TD          +TWRG AG +   AAGR+Y KGMRIDY L    LA  V   +V G GA+R GFLGSDH PLL+ L
Sbjct:  246 AAHADDRGQPGFTPNEQARFRSLLAAG-GLVDAYRTLHPVANWATD----------VTWRGCAGKDGPPAAGRYYAKGMRIDYVLVDRRLAGSVVRAEVLGGGAERRGFLGSDHCPLLVEL 355          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A516AG33_LINPO (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG33_LINPO)

HSP 1 Score: 100 bits (249), Expect = 1.060e-22
Identity = 58/123 (47.15%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   13 AADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPG---ITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            A  P+N G PG +  ERER S+L   G GL DA+R L         R  E+   PG    TWRGT   +     R+ G G R+DYFL S  LAPR+A  ++ G GA REGFLGSDH P+LL L
Sbjct:  250 ATPPENRGIPGFSDGERERFSRLFTAG-GLFDAWRRLH--------RVGETPPEPGDAAFTWRGTPAVQSRFRARYEGMGQRLDYFLLSEALAPRLARCEILGRGAGREGFLGSDHCPVLLEL 363          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A6U5AHS1_HEMAN (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5AHS1_HEMAN)

HSP 1 Score: 92.8 bits (229), Expect = 7.800e-20
Identity = 54/118 (45.76%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   19 DPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            D  + GQPG T  E++R + +L    GL+DA+RH  PA     DR S +      TWRGT     AA  R++ KGMRIDY L S +L PRV    + G G+ R GF GSDH P+ LTL
Sbjct:  258 DYNDGGQPGYTFNEQDRFTGILQ-ESGLVDAFRHANPADEPCNDRGSANW-----TWRGTG----AATDRYHNKGMRIDYTLVSSSLLPRVQSALILGHGSQRVGFCGSDHCPITLTL 365          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7S1NTG2_9EUGL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NTG2_9EUGL)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-19
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    7 CPAADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPR--VAEVKVFGSGADREGFLGSDHSPLLLTL 372
            CP A  ++ GQPG TP E++R + +L  G GL+D YRHL P  ++              TWRG+         ++YG+GMRIDY L S  L  R  V E +V G GA+R GF+GSDHSP++L L
Sbjct:  159 CPTAT-EDVGQPGFTPREQQRFAAILEAG-GLVDTYRHLHPEPSADD-----------YTWRGSP----PVYAKYYGRGMRIDYALMSRPLVNRLGVRESRVVGRGAERGGFMGSDHSPVVLVL 265          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7J6P9K2_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P9K2_PEROL)

HSP 1 Score: 88.6 bits (218), Expect = 2.220e-19
Identity = 54/121 (44.63%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   34 GQPGCTPAERERH------SQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGN--EVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            GQPG T AE++R       ++LL  G GLIDAYRH  P      D           TWRG  G        GRFYGKGMRIDY L   ++   V  V+  G G +R+GF+GSDH+PLL T+
Sbjct:   50 GQPGFTKAEQDRQVGVQPFAELLKTG-GLIDAYRHCHPDEDWEKD----------ATWRGAPGKPPNPPEFGRFYGKGMRIDYVLVPESMTKDVQSVENLGIGKERKGFMGSDHAPLLTTI 159          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A7J6M3C5_PERCH (Poly(A)-specific ribonuclease PARN n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6M3C5_PERCH)

HSP 1 Score: 89.4 bits (220), Expect = 2.980e-18
Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   34 GQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNE--------VAAA----GRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            GQPG T AE++R S LL  G GLIDAYR   PA     D           TWRG  G          ++++    GRFYGKGMRIDY L   ++   +  V   G G +R+GF+GSDH+PLL T+
Sbjct:  934 GQPGFTKAEQDRFSDLLDAG-GLIDAYRQCHPAEDWDKD----------ATWRGAPGKPPNPPDCKIISSSNDRYGRFYGKGMRIDYVLVPESMKDDIVSVDNLGVGKERKGFMGSDHAPLLATI 1047          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A812QKL5_SYMPI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QKL5_SYMPI)

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-17
Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:    1 RMCPAADPKNS-GQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            + C   DP++  GQPG T  ER R  +LL  G  L+DAYR L PA  +    A+     P  TWRG        A +++ KGMRIDY L +  +  R+    + G GADR GFLGSDH PL LTL
Sbjct:  179 QQCYQGDPEDMRGQPGFTEGERRRFKELLETG-RLVDAYRQLHPA--NDVPPAAG----PYFTWRGHPPVHQNVA-KYHAKGMRIDYALVAEEILSRLEACDILGQGADRNGFLGSDHCPLRLTL 295          
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Match: A0A812IK21_9DINO (APE1L protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IK21_9DINO)

HSP 1 Score: 85.9 bits (211), Expect = 3.120e-17
Identity = 55/125 (44.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 RMCPAADPKNS-GQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDRASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVKVFGSGADREGFLGSDHSPLLLTL 372
            + C   +P +  GQPG T  ER R  +LL  G  L+DAYR L P    S D  S +   P  TWRG        A +++GKGMRIDY L +  +  R+    + G GADR GFLGSDH PL  TL
Sbjct:  257 QQCYQGEPADMRGQPGFTEGERRRFKELLVTG-KLVDAYRRLHP----SDDVPSAAG--PYFTWRGHPPVHQTVA-KYHGKGMRIDYALVAEEMLTRLEACDILGQGADRNGFLGSDHCPLRCTL 373          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10430.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBX5_9PHAE3.630e-5370.73DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S0JJC5_9EUKA5.810e-2749.57Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R1D0C8_EMIHU7.990e-2652.07DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A516AG33_LINPO1.060e-2247.15DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A6U5AHS1_HEMAN7.800e-2045.76DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S1NTG2_9EUGL1.050e-1943.55DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7J6P9K2_PEROL2.220e-1944.63Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A7J6M3C5_PERCH2.980e-1843.20Poly(A)-specific ribonuclease PARN n=1 Tax=Perkins... [more]
A0A812QKL5_SYMPI1.200e-1744.00DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A812IK21_9DINO3.120e-1744.00APE1L protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10430contigF-distichus_contig10430:8889..9657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog2880.D7FVZ7
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009507,GO:0009536,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016889,GO:0016894,GO:0016895,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size372
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10430.385.1prot_F-distichus_contig10430.385.1Fucus distichus monoicouspolypeptideF-distichus_contig10430 8889..9654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.3915172-CDS-F-distichus_contig10430:8888..90201622928962.3915172-CDS-F-distichus_contig10430:8888..9020Fucus distichus monoicousCDSF-distichus_contig10430 8889..9020 -
1690885083.871383-CDS-F-distichus_contig10430:8888..90201690885083.871383-CDS-F-distichus_contig10430:8888..9020Fucus distichus monoicousCDSF-distichus_contig10430 8889..9020 -
1622928962.40634-CDS-F-distichus_contig10430:9417..96541622928962.40634-CDS-F-distichus_contig10430:9417..9654Fucus distichus monoicousCDSF-distichus_contig10430 9418..9654 -
1690885083.8863163-CDS-F-distichus_contig10430:9417..96541690885083.8863163-CDS-F-distichus_contig10430:9417..9654Fucus distichus monoicousCDSF-distichus_contig10430 9418..9654 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.425519-UTR-F-distichus_contig10430:9654..96571622928962.425519-UTR-F-distichus_contig10430:9654..9657Fucus distichus monoicousUTRF-distichus_contig10430 9655..9657 -
1690885083.8980927-UTR-F-distichus_contig10430:9654..96571690885083.8980927-UTR-F-distichus_contig10430:9654..9657Fucus distichus monoicousUTRF-distichus_contig10430 9655..9657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10430.385.1

>prot_F-distichus_contig10430.385.1 ID=prot_F-distichus_contig10430.385.1|Name=mRNA_F-distichus_contig10430.385.1|organism=Fucus distichus monoicous|type=polypeptide|length=123bp
MCPAADPKNSGQPGCTPAERERHSQLLACGGGLIDAYRHLQPAAASSTDR
ASESTDTPGITWRGTAGNEVAAAGRFYGKGMRIDYFLTSPTLAPRVAEVK
VFGSGADREGFLGSDHSPLLLTL
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mRNA from alignment at F-distichus_contig10430:8889..9657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10430.385.1 ID=mRNA_F-distichus_contig10430.385.1|Name=mRNA_F-distichus_contig10430.385.1|organism=Fucus distichus monoicous|type=mRNA|length=769bp|location=Sequence derived from alignment at F-distichus_contig10430:8889..9657- (Fucus distichus monoicous)
CGCATGTGCCCCGCAGCGGACCCCAAGAACAGCGGGCAACCCGGCTGCAC GCCGGCGGAGCGAGAGCGACACTCGCAGCTCCTCGCGTGCGGGGGCGGGC TGATCGACGCCTACCGGCACTTACAACCCGCTGCGGCGTCGTCGACAGAC AGAGCATCGGAGTCTACGGACACACCCGGAATCACGTGGAGAGGCACGGC GGGGAATGAAGTCGCCGCGGCAGGGAGATTCTACGGCAAGGTGCGTGTGT AATTTTTGGTATCCCATCCAAAGCACTGTTTCCCGCTTACGTTGATATCT GAAGTAACGAAACACAGCTCTACGGTACGTTGTATTTTTTTCTTAAAACA ATGGAAGACATATTTTTACGCCGTATCTTTTCTTGAACGTAATTAAATAT ATATAATATTCCTATAATAGTCCGGTCCGCTGAGGGTTTTGGGCGTATGC CTCGCGTAGGCAGGCGCCCTGCCGAACTCATAGCTCTGTGCCCTTCATTA CAACAGCAGTACCATATTTATTTTCGCGTGGAAAGACGTTCCGAAGGCAG AAATTAGCTTTTTATGCTTTTAAGGGGGCGCGGATACCAGAGCGACTCTC TACAAATGCTGCAGTATAATATATTTCTTCGTTCCAGGGTATGCGTATCG ACTACTTCCTCACGTCCCCGACGCTCGCTCCAAGAGTCGCCGAGGTCAAG GTTTTCGGCAGCGGGGCCGATCGCGAGGGCTTCCTGGGGTCGGACCACTC CCCGCTCCTACTCACGCTT
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Coding sequence (CDS) from alignment at F-distichus_contig10430:8889..9657-

>mRNA_F-distichus_contig10430.385.1 ID=mRNA_F-distichus_contig10430.385.1|Name=mRNA_F-distichus_contig10430.385.1|organism=Fucus distichus monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at F-distichus_contig10430:8889..9657- (Fucus distichus monoicous)
ATGTGCCCCGCAGCGGACCCCAAGAACAGCGGGCAACCCGGCTGCACGCC
GGCGGAGCGAGAGCGACACTCGCAGCTCCTCGCGTGCGGGGGCGGGCTGA
TCGACGCCTACCGGCACTTACAACCCGCTGCGGCGTCGTCGACAGACAGA
GCATCGGAGTCTACGGACACACCCGGAATCACGTGGAGAGGCACGGCGGG
GAATGAAGTCGCCGCGGCAGGGAGATTCTACGGCAAGATGTGCCCCGCAG
CGGACCCCAAGAACAGCGGGCAACCCGGCTGCACGCCGGCGGAGCGAGAG
CGACACTCGCAGCTCCTCGCGTGCGGGGGCGGGCTGATCGACGCCTACCG
GCACTTACAACCCGCTGCGGCGTCGTCGACAGACAGAGCATCGGAGTCTA
CGGACACACCCGGAATCACGTGGAGAGGCACGGCGGGGAATGAAGTCGCC
GCGGCAGGGAGATTCTACGGCAAGGGTATGCGTATCGACTACTTCCTCAC
GTCCCCGACGCTCGCTCCAAGAGTCGCCGAGGTCAAGGTTTTCGGCAGCG
GGGCCGATCGCGAGGGCTTCCTGGGGTCGGACCACTCCCCGCTCCTACTC
ACGCTTGGTATGCGTATCGACTACTTCCTCACGTCCCCGACGCTCGCTCC
AAGAGTCGCCGAGGTCAAGGTTTTCGGCAGCGGGGCCGATCGCGAGGGCT
TCCTGGGGTCGGACCACTCCCCGCTCCTACTCACGCTT
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