mRNA_F-distichus_contig104291.384.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104291.384.1
Unique NamemRNA_F-distichus_contig104291.384.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: A0A6H5JPC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC8_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 5.110e-57
Identity = 92/127 (72.44%), Postives = 109/127 (85.83%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTVVLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRKVPTSP 381
            IWW AYG+YS+ F+RAL N   P +P  T +QR++G QAAAG CTGMTTV+LTNPLDVLRTRLQVEGRRGD RT++SEYR L+AESGP GLM+GL PR++A+APASVLI+SVYELIKRLSRK P +P
Sbjct:  142 IWWAAYGVYSRAFVRALGNLPEP-VPKLTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLRTRLQVEGRRGDDRTIVSEYRILMAESGPRGLMKGLGPRILAVAPASVLIVSVYELIKRLSRKTPLAP 267          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: D8LS61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS61_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.140e-56
Identity = 93/127 (73.23%), Postives = 107/127 (84.25%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTVVLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRKVPTSP 381
            IWW AYG+YS+ F+RAL N   P +P  T +QR++G QAAAG CTGMTTV+LTNPLDVLRTRLQVEGRRGD RT+ SEYR L+AESGP GLM+GL PR++AMAPASVLI+SVYELIKRLSRK P  P
Sbjct:  171 IWWAAYGVYSRAFVRALGNLPEP-VPELTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLRTRLQVEGRRGDDRTIASEYRILMAESGPRGLMKGLGPRILAMAPASVLIVSVYELIKRLSRKTPLPP 296          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: A0A835YRA5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.960e-24
Identity = 67/137 (48.91%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    4 WWTAYGLYS---------------KVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTVVLTNPLDVLRTRLQVE-GRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRK 366
            WW+AYGLY                K  + A  +  P  L   + E R+I  QA AG   G TTVVLTNPLDV+RTRLQV  G      T+LSE RAL A +G   LM+GL PRM+++APASVL+++ YE IKR+SRK
Sbjct:  209 WWSAYGLYKXXXXXXXXXXXXXXXKEPLAARIDALPLNL---SEEARQILVQATAGYLAGATTVVLTNPLDVIRTRLQVRRGAAAAGATMLSEARALWAAAGARALMKGLGPRMISVAPASVLVVTTYEYIKRVSRK 342          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: A0A7S1X816_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X816_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 2.910e-19
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRAL------ANFNPPQLPAFTGEQRKIGA-QAAAGLCTGMTTVVLTNPLDVLRTRLQVE--GRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRKVPTS 378
            IWW+AYG Y ++   A+             +   +     I A Q +A +  G+T+ V+TNPLDV++TR+QV   GR G   T +  +R L+   G  GLMRG+VP+M   A  S  ++SVYE +KRL+ K PT+
Sbjct:   60 IWWSAYGAYQRLIWNAVEVWVDRGGAGQGSIEEVSARGSTIAAVQTSASVAAGLTSGVITNPLDVIKTRIQVAHTGRGGQVPTFMGVFRDLVRHDGVAGLMRGVVPKMANTALWSTCMVSVYEFLKRLAMKDPTA 194          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: A0A7S2V638_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V638_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.170e-19
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIG-AQAAAGLCTGMTTVVLTNPLDVLRTRLQVEGRRGD--KRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRK 366
            IWWT Y    ++ +  ++       P F+ +      +QA AG   G   V+LTNPLDV+RTRLQV G       RT ++E++ L+A  G   L +GLVPR++A+APASV+I+SVYE IKR+S K
Sbjct:  223 IWWTTYHAV-ELHVERVSR------PLFSNKDNAARVSQAIAGFTGGTVAVLLTNPLDVIRTRLQVLGTENSTANRTFVTEFQHLLATEGAKSLTKGLVPRLIAVAPASVIIISVYEFIKRVSVK 340          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: A0A7S4NRY9_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NRY9_GUITH)

HSP 1 Score: 89.4 bits (220), Expect = 9.560e-19
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTVVLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRK 366
            IWW +YG   +   R  ++F P      T    K   +A+AG   G+   V TNP+DV RTRLQVEG   D   L +  R L  + GP  L++G+  R+MA  P+S++I++VYEL+KRLS++
Sbjct:  201 IWWGSYGYLRE---RLQSHFMP------TSHASKRLTEASAGASAGLVAAVATNPIDVARTRLQVEGHPRDGSNLRTTLRHLWCQEGPKSLLKGVQARIMASVPSSIMIVTVYELVKRLSKR 313          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: UPI001CF3F204 (LOW QUALITY PROTEIN: solute carrier family 25 member 44-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3F204)

HSP 1 Score: 89.0 bits (219), Expect = 1.080e-18
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTVVLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRK 366
            IWW  YG Y++ F+ +L     P L             A AG   G TT  +TNPLD++RTRLQV G  G    ++  +R L+ E GP GL +GL  RM++M P+SV+++  YE +KRLS K
Sbjct:  181 IWWFTYGAYTR-FVGSLVVSGTPHLFVL----------AVAGALAGFTTSTITNPLDIMRTRLQVGG--GKSTVVIHMFRTLLQEEGPTGLTKGLSARMLSMVPSSVIMVLGYETVKRLSLK 289          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: UPI0009E48ABE (solute carrier family 25 member 44-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E48ABE)

HSP 1 Score: 87.0 bits (214), Expect = 1.140e-17
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTVVLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRK 366
            IWW++YG+Y+ +    + +  P  L             A AG   G+TT   TNPLD++RTRLQV G  G    +L  +R L+ E GP GL +GL  R+++M P+S++++  YE +KRLS K
Sbjct:  252 IWWSSYGMYTGLVGNIVLSGTPHML-----------VLAIAGSMAGLTTATTTNPLDIMRTRLQVGG--GKSTFVLQMFRTLLKEEGPKGLTKGLSARILSMVPSSIVMVLGYETVKRLSLK 360          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: A0A024U532_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U532_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.690e-17
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTVVLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSRK 366
            IWW  YG    VF   +  F+   +P      ++I AQA  G   G+ T +LTNP+DV+RTR Q+  + G     +  +R LI + G  GLM G   R+++M P+ VLI+S YEL+KRLSRK
Sbjct:  200 IWWGFYGAVWPVFYANIP-FDMEPMP------KQIVAQAIGGGSAGVFTAILTNPMDVIRTRTQIYTQYG----AIDTFRHLIRKEGAAGLMSGAFARVLSMGPSGVLIISAYELVKRLSRK 310          
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Match: A0A7S0W6F2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W6F2_9CRYP)

HSP 1 Score: 80.5 bits (197), Expect = 2.860e-17
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  121 AGLCTGMTTVVLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMMAMAPASVLILSVYELIKRLSR 363
            AG   G+ + ++TNP+DV RTRLQV+GR  D  TL S  R L+ + G   +M+G+  R+MA  P+S++++SVYE +KRLSR
Sbjct:   20 AGASAGVVSTIVTNPMDVARTRLQVDGRIHDGSTLWSTLRLLVRDEGSLSVMKGVGARLMASVPSSIMVISVYEFVKRLSR 100          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104291.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPC8_9PHAE5.110e-5772.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS61_ECTSI1.140e-5673.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRA5_9STRA7.960e-2448.91Mitochondrial carrier domain-containing protein n=... [more]
A0A7S1X816_9CHLO2.910e-1938.52Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S2V638_9STRA3.170e-1944.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4NRY9_GUITH9.560e-1940.98Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
UPI001CF3F2041.080e-1841.80LOW QUALITY PROTEIN: solute carrier family 25 memb... [more]
UPI0009E48ABE1.140e-1739.34solute carrier family 25 member 44-like n=1 Tax=Or... [more]
A0A024U532_9STRA1.690e-1741.80Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S0W6F2_9CRYP2.860e-1748.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104291contigF-distichus_contig104291:1019..1923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1.1e-44
Seed eggNOG ortholog2880.D8LS61
Preferred nameSLC25A44
KEGG koko:K15121
KEGG TC2.A.29
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0019867,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098588,GO:0098805
EggNOG free text desc.transmembrane transport
EggNOG OGsKOG0765@1,KOG0765@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.334347-CDS-F-distichus_contig104291:1018..11721622928962.334347-CDS-F-distichus_contig104291:1018..1172Fucus distichus monoicousCDSF-distichus_contig104291 1019..1172 -
1690885083.839075-CDS-F-distichus_contig104291:1018..11721690885083.839075-CDS-F-distichus_contig104291:1018..1172Fucus distichus monoicousCDSF-distichus_contig104291 1019..1172 -
1622928962.352039-CDS-F-distichus_contig104291:1696..19231622928962.352039-CDS-F-distichus_contig104291:1696..1923Fucus distichus monoicousCDSF-distichus_contig104291 1697..1923 -
1690885083.856121-CDS-F-distichus_contig104291:1696..19231690885083.856121-CDS-F-distichus_contig104291:1696..1923Fucus distichus monoicousCDSF-distichus_contig104291 1697..1923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104291.384.1prot_F-distichus_contig104291.384.1Fucus distichus monoicouspolypeptideF-distichus_contig104291 1019..1923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104291.384.1

>prot_F-distichus_contig104291.384.1 ID=prot_F-distichus_contig104291.384.1|Name=mRNA_F-distichus_contig104291.384.1|organism=Fucus distichus monoicous|type=polypeptide|length=127bp
IWWTAYGLYSKVFIRALANFNPPQLPAFTGEQRKIGAQAAAGLCTGMTTV
VLTNPLDVLRTRLQVEGRRGDKRTLLSEYRALIAESGPGGLMRGLVPRMM
AMAPASVLILSVYELIKRLSRKVPTSP
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mRNA from alignment at F-distichus_contig104291:1019..1923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104291.384.1 ID=mRNA_F-distichus_contig104291.384.1|Name=mRNA_F-distichus_contig104291.384.1|organism=Fucus distichus monoicous|type=mRNA|length=905bp|location=Sequence derived from alignment at F-distichus_contig104291:1019..1923- (Fucus distichus monoicous)
ATCTGGTGGACGGCATACGGTCTGTACAGCAAGGTGTTCATCCGAGCTCT GGCGAATTTCAACCCCCCGCAACTCCCGGCCTTCACGGGAGAGCAGCGCA AGATCGGGGCGCAGGCGGCCGCGGGTCTCTGCACAGGAATGACCACGGTG GTCCTGACCAACCCTCTGGACGTGCTGCGGACGAGGCTTCAGGTTGAGGG CCGCCGCGGTGATAAGAGGACGCTACTGTGAGTGTGACCCATCCACCCAA ATCCATCAGCAGAAGCTGCTGCCCGCCAGCGCCGCGGTTACCTCGCCCGC CGAATCGCTTTTGACCAACTATTTTGTGAGGAAGGCTGTATATATATATA TATACTTTCTGTAAGCTCCATAATAACATTAAGACTGTAGCTCTTATGAA TATAGATGAGATGAATGAAGACCGTGCGCGCGTGCTGCAGAAGAATAAAA ATAAAATGAGAGGGCTTTTTTACTAGAGTAATATGTAGTCTGTAGCTCTA GACTATGATGTATATTTATTTTTTTGTCAAGATGTATGTATACACTAATT GTGATGAAAGTTGGTCCAGATCAAATGTTGGCGTCGTCTTGTAGATGTGG GTGTGTGTGTGTGTGTATGTGTGTTTGCGGGTACGGGGGTATGTGTCTAT GACCAAAACCAAATCGACCGCGTTTGAAACGTTCCCATGTATCTTGTCGT CCTGACTCCATACTGGGCGTGTTTTCTCTGGTGTGGACGATGTTGGCGCA GGTCAGAGTACCGGGCGTTGATTGCCGAAAGCGGGCCGGGGGGGTTGATG AGAGGCCTGGTGCCGCGCATGATGGCCATGGCTCCGGCGTCCGTTCTGAT CTTGAGCGTGTACGAACTGATCAAGCGCTTGAGCCGGAAGGTTCCGACGT CCCCG
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Coding sequence (CDS) from alignment at F-distichus_contig104291:1019..1923-

>mRNA_F-distichus_contig104291.384.1 ID=mRNA_F-distichus_contig104291.384.1|Name=mRNA_F-distichus_contig104291.384.1|organism=Fucus distichus monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at F-distichus_contig104291:1019..1923- (Fucus distichus monoicous)
ATCTGGTGGACGGCATACGGTCTGTACAGCAAGGTGTTCATCCGAGCTCT
GGCGAATTTCAACCCCCCGCAACTCCCGGCCTTCACGGGAGAGCAGCGCA
AGATCGGGGCGCAGGCGGCCGCGGGTCTCTGCACAGGAATGACCACGGTG
GTCCTGACCAACCCTCTGGACGTGCTGCGGACGAGGCTTCAGGTTGAGGG
CCGCCGCGGTGATAAGAGGACGCTACTATCTGGTGGACGGCATACGGTCT
GTACAGCAAGGTGTTCATCCGAGCTCTGGCGAATTTCAACCCCCCGCAAC
TCCCGGCCTTCACGGGAGAGCAGCGCAAGATCGGGGCGCAGGCGGCCGCG
GGTCTCTGCACAGGAATGACCACGGTGGTCCTGACCAACCCTCTGGACGT
GCTGCGGACGAGGCTTCAGGTTGAGGGCCGCCGCGGTGATAAGAGGACGC
TACTGTCAGAGTACCGGGCGTTGATTGCCGAAAGCGGGCCGGGGGGGTTG
ATGAGAGGCCTGGTGCCGCGCATGATGGCCATGGCTCCGGCGTCCGTTCT
GATCTTGAGCGTGTACGAACTGATCAAGCGCTTGAGCCGGAAGGTTCCGA
CGTCCCCGGTCAGAGTACCGGGCGTTGATTGCCGAAAGCGGGCCGGGGGG
GTTGATGAGAGGCCTGGTGCCGCGCATGATGGCCATGGCTCCGGCGTCCG
TTCTGATCTTGAGCGTGTACGAACTGATCAAGCGCTTGAGCCGGAAGGTT
CCGACGTCCCCG
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