mRNA_F-distichus_contig104261.381.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104261.381.1
Unique NamemRNA_F-distichus_contig104261.381.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104261.381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104261contigF-distichus_contig104261:384..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104261.381.1prot_F-distichus_contig104261.381.1Fucus distichus monoicouspolypeptideF-distichus_contig104261 394..1195 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.791394-UTR-F-distichus_contig104261:383..3931622928961.791394-UTR-F-distichus_contig104261:383..393Fucus distichus monoicousUTRF-distichus_contig104261 384..393 -
1690885083.5811968-UTR-F-distichus_contig104261:383..3931690885083.5811968-UTR-F-distichus_contig104261:383..393Fucus distichus monoicousUTRF-distichus_contig104261 384..393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.8104463-CDS-F-distichus_contig104261:393..5581622928961.8104463-CDS-F-distichus_contig104261:393..558Fucus distichus monoicousCDSF-distichus_contig104261 394..558 -
1690885083.5973523-CDS-F-distichus_contig104261:393..5581690885083.5973523-CDS-F-distichus_contig104261:393..558Fucus distichus monoicousCDSF-distichus_contig104261 394..558 -
1622928961.826158-CDS-F-distichus_contig104261:1141..11951622928961.826158-CDS-F-distichus_contig104261:1141..1195Fucus distichus monoicousCDSF-distichus_contig104261 1142..1195 -
1690885083.6057196-CDS-F-distichus_contig104261:1141..11951690885083.6057196-CDS-F-distichus_contig104261:1141..1195Fucus distichus monoicousCDSF-distichus_contig104261 1142..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104261.381.1

>prot_F-distichus_contig104261.381.1 ID=prot_F-distichus_contig104261.381.1|Name=mRNA_F-distichus_contig104261.381.1|organism=Fucus distichus monoicous|type=polypeptide|length=73bp
SSGFSGSPLVLLAVPPEETRCSRQRQQKAQGGPVSFPLFVENWSDSEIVL
MPWTTSKQPGLRLLFVATVTSV*
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mRNA from alignment at F-distichus_contig104261:384..1195-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104261.381.1 ID=mRNA_F-distichus_contig104261.381.1|Name=mRNA_F-distichus_contig104261.381.1|organism=Fucus distichus monoicous|type=mRNA|length=812bp|location=Sequence derived from alignment at F-distichus_contig104261:384..1195- (Fucus distichus monoicous)
TCATCTGGTTTCTCGGGGAGCCCGCTCGTACTGCTCGCTGTTCCTCCTGA
AGAGGCGAGTGACGAAAGCTACCATGTTCGGTAGCAGTAAGAACTAAGAA
CAGCAGACAGGGTAAGATACGCTCGAGCTTACAAATGACCGAGGAATTAT
TTATTCTTTTTGTAATTCCAATATCAGGTCCTTCCTTTACAGCTCGAAGA
CCTTATGTACACCATTCCTTAGAAAAGTTGAAGTTAACGCGTGATTGTCA
ACCTCGAAGCTTCGTCTCGTGAAGTCCACAGTCAGTCGCGAGATCCACGA
GACCTTTTGATATTTCATGCACGTAGATGACGACATTTCACGATATTCTT
ACGCCCTCCCGTCAATGGTGAATAATACTATACGGCGTCTCATGCACAGT
AGTAGTGATATTAATAGATGTAACTGCTGTTGTTGTACCCATGAGGGACG
CACGATACTTGTACGTGGTCGGCTCGGTGAATTGATCGAACCGAAGAGGA
CATCACATACTATTGACCCTAGCGTCACTCGTTTACCCTCAGCCTGCTTG
TTTGACCCGTTCTCGAGTGCTACAAATGCAGTCTCTCTTCATCTCACTGC
TCCATCGTGCTCTACCTATCCCATTCGTGATCACCAGACAAGGTGTAGCC
GTCAGCGTCAACAAAAGGCTCAAGGTGGTCCTGTGTCATTTCCACTGTTT
GTGGAAAATTGGAGCGATAGCGAAATAGTGCTGATGCCATGGACAACAAG
CAAGCAACCTGGACTCCGTCTTCTGTTCGTCGCAACTGTGACTTCTGTGT
GAAGAAGAAGGT
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Coding sequence (CDS) from alignment at F-distichus_contig104261:384..1195-

>mRNA_F-distichus_contig104261.381.1 ID=mRNA_F-distichus_contig104261.381.1|Name=mRNA_F-distichus_contig104261.381.1|organism=Fucus distichus monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at F-distichus_contig104261:384..1195- (Fucus distichus monoicous)
TCATCTGGTTTCTCGGGGAGCCCGCTCGTACTGCTCGCTGTTCCTCCTGA
AGAGTCATCTGGTTTCTCGGGGAGCCCGCTCGTACTGCTCGCTGTTCCTC
CTGAAGAGACAAGGTGTAGCCGTCAGCGTCAACAAAAGGCTCAAGGTGGT
CCTGTGTCATTTCCACTGTTTGTGGAAAATTGGAGCGATAGCGAAATAGT
GCTGATGCCATGGACAACAAGCAAGCAACCTGGACTCCGTCTTCTGTTCG
TCGCAACTGTGACTTCTGTGTGAACAAGGTGTAGCCGTCAGCGTCAACAA
AAGGCTCAAGGTGGTCCTGTGTCATTTCCACTGTTTGTGGAAAATTGGAG
CGATAGCGAAATAGTGCTGATGCCATGGACAACAAGCAAGCAACCTGGAC
TCCGTCTTCTGTTCGTCGCAACTGTGACTTCTGTGTGA
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