mRNA_F-distichus_contig103915.349.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE) HSP 1 Score: 115 bits (287), Expect = 1.280e-29 Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
+LY C+TW+ HY LR++HH +LLR+IG RK+ +R SY++ L+ C+S+ T+R RRLL+AG+L R GRLPKR++F L G +R RGG+++ W CV D+ A G
Sbjct: 4 LLYSCTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 112 bits (281), Expect = 7.660e-29 Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRK-RPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALGIT 351
+LY C TWTL +H+ KLR+ HH VLLR+IG R+ R DH SY++AL ITRCESI TT+R RRL +AG ++R GRLP R++F + G GG+ K W + D+ T
Sbjct: 10 LLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKAT 127
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.430e-28 Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
+LY C TW+ HY LR++HH +LLR+IG RK+ +R SY++ L CES+ T+R RRLL+AG L R GRLPKR++F L G +R RGG+++ W CV D+ A G
Sbjct: 136 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.680e-26 Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
+LY C TW+ HY LR++HH +LLR+IG RK+ +R SY++ L+ C+S+ T+R RRLL+AG L R GRLPKR++F L G +R RGG+++ W CV D+ A G
Sbjct: 488 LLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 111 bits (277), Expect = 5.430e-26 Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
+LY C TW+ HY LR++HH +LLR+IG RK+ +R SY++ L+ C+S+ T+R RRLL+AG L R GRLPKR++ L G +R RGG+++ W CV D+ A G
Sbjct: 160 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE) HSP 1 Score: 106 bits (265), Expect = 8.080e-26 Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDI 333
+LY C TW+ HY LR++HH +LLR++G RK+ +R +++ L+ C+S+ T+R RR+L+AG L R GRLPKR++F L G +R RGG+++ W CV D+
Sbjct: 136 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDL 246
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.920e-24 Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
+LY C TW+ HY LR++HH +LLR+IG RK+ +R SY++A + C+S+ T+R RRLL A L R GRLPKR++ L G +R RGG+ + W CV D+ A G
Sbjct: 116 LLYGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5JKQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ7_9PHAE) HSP 1 Score: 103 bits (258), Expect = 5.870e-24 Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
+LY C TW+ HY LR++HH +LLR+IG RK+ +R SY++ L+ C+S+ T+R RRL++AG L R G LPKR++F L G +R RGG+ + W CV D+ G
Sbjct: 138 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIR-RRLMFAGALARQPDGLLPKRLMFGELAGGEKRRRGGQKQNWLKCVLDDLKVFG 251
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE) HSP 1 Score: 102 bits (255), Expect = 7.570e-23 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDI 333
+LY C TW RQ+ Y LRT+HH +LLR++G R + +R SY++ L+ C+S+ +T+R RRLL+AG L R GRLPKR++ L G GRG ++ W C++ D+
Sbjct: 701 LLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDL 811
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE) HSP 1 Score: 101 bits (252), Expect = 9.700e-23 Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCV 321
+LY C TW+ HY LR++HH +LLR+IG RK+ +R SY++ L+ C+S+ T+R RRLL AG L R S GRLPKR++ L G +R + G+++ W CV
Sbjct: 136 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRLMLGELAGGEQRRKWGQEQNWPTCV 242 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig103915.349.1 >prot_F-distichus_contig103915.349.1 ID=prot_F-distichus_contig103915.349.1|Name=mRNA_F-distichus_contig103915.349.1|organism=Fucus distichus monoicous|type=polypeptide|length=132bp ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEIback to top mRNA from alignment at F-distichus_contig103915:254..649+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig103915.349.1 ID=mRNA_F-distichus_contig103915.349.1|Name=mRNA_F-distichus_contig103915.349.1|organism=Fucus distichus monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at F-distichus_contig103915:254..649+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig103915:254..649+ >mRNA_F-distichus_contig103915.349.1 ID=mRNA_F-distichus_contig103915.349.1|Name=mRNA_F-distichus_contig103915.349.1|organism=Fucus distichus monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at F-distichus_contig103915:254..649+ (Fucus distichus monoicous)back to top |