mRNA_F-distichus_contig103915.349.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103915.349.1
Unique NamemRNA_F-distichus_contig103915.349.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.280e-29
Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
            +LY C+TW+    HY  LR++HH +LLR+IG  RK+  +R  SY++ L+   C+S+  T+R RRLL+AG+L R   GRLPKR++F  L G  +R RGG+++ W  CV  D+ A G
Sbjct:    4 LLYSCTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 112 bits (281), Expect = 7.660e-29
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRK-RPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALGIT 351
            +LY C TWTL  +H+ KLR+ HH VLLR+IG  R+ R DH   SY++AL ITRCESI TT+R RRL +AG ++R   GRLP R++F  + G      GG+ K W   +  D+     T
Sbjct:   10 LLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKAT 127          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.430e-28
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
            +LY C TW+    HY  LR++HH +LLR+IG  RK+  +R  SY++ L    CES+  T+R RRLL+AG L R   GRLPKR++F  L G  +R RGG+++ W  CV  D+ A G
Sbjct:  136 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.680e-26
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
            +LY C TW+    HY  LR++HH +LLR+IG  RK+  +R  SY++ L+   C+S+  T+R RRLL+AG L R   GRLPKR++F  L G  +R RGG+++ W  CV  D+ A G
Sbjct:  488 LLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.430e-26
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
            +LY C TW+    HY  LR++HH +LLR+IG  RK+  +R  SY++ L+   C+S+  T+R RRLL+AG L R   GRLPKR++   L G  +R RGG+++ W  CV  D+ A G
Sbjct:  160 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.080e-26
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDI 333
            +LY C TW+    HY  LR++HH +LLR++G  RK+  +R   +++ L+   C+S+  T+R RR+L+AG L R   GRLPKR++F  L G  +R RGG+++ W  CV  D+
Sbjct:  136 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDL 246          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.920e-24
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
            +LY C TW+    HY  LR++HH +LLR+IG  RK+  +R  SY++A +   C+S+  T+R RRLL A  L R   GRLPKR++   L G  +R RGG+ + W  CV  D+ A G
Sbjct:  116 LLYGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5JKQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.870e-24
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDIWALG 345
            +LY C TW+    HY  LR++HH +LLR+IG  RK+  +R  SY++ L+   C+S+  T+R RRL++AG L R   G LPKR++F  L G  +R RGG+ + W  CV  D+   G
Sbjct:  138 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIR-RRLMFAGALARQPDGLLPKRLMFGELAGGEKRRRGGQKQNWLKCVLDDLKVFG 251          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.570e-23
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCVQSDI 333
            +LY C TW  RQ+ Y  LRT+HH +LLR++G  R +  +R  SY++ L+   C+S+ +T+R RRLL+AG L R   GRLPKR++   L G    GRG  ++ W  C++ D+
Sbjct:  701 LLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDL 811          
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 9.700e-23
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEITRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKDKEWTDCV 321
            +LY C TW+    HY  LR++HH +LLR+IG  RK+  +R  SY++ L+   C+S+  T+R RRLL AG L R S GRLPKR++   L G  +R + G+++ W  CV
Sbjct:  136 LLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRLMLGELAGGEQRRKWGQEQNWPTCV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103915.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE1.280e-2946.09Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI001AA1A1FE7.660e-2947.46hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JAH7_9PHAE1.430e-2846.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE1.680e-2646.09Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X4_9PHAE5.430e-2645.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ16_9PHAE8.080e-2642.34Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K2V4_9PHAE1.920e-2444.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKQ7_9PHAE5.870e-2443.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KN66_9PHAE7.570e-2343.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6U6_9PHAE9.700e-2344.86Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103915contigF-distichus_contig103915:254..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score73.9
Seed ortholog evalue6.1e-11
Seed eggNOG ortholog136037.KDR24435
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3AN3D@33154,3C1II@33208,3DHKC@33213,3SRQY@50557,4237N@6656,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.8757362-CDS-F-distichus_contig103915:253..6491622928958.8757362-CDS-F-distichus_contig103915:253..649Fucus distichus monoicousCDSF-distichus_contig103915 254..649 +
1690885082.3130164-CDS-F-distichus_contig103915:253..6491690885082.3130164-CDS-F-distichus_contig103915:253..649Fucus distichus monoicousCDSF-distichus_contig103915 254..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103915.349.1prot_F-distichus_contig103915.349.1Fucus distichus monoicouspolypeptideF-distichus_contig103915 254..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103915.349.1

>prot_F-distichus_contig103915.349.1 ID=prot_F-distichus_contig103915.349.1|Name=mRNA_F-distichus_contig103915.349.1|organism=Fucus distichus monoicous|type=polypeptide|length=132bp
ILYVCSTWTLRQEHYVKLRTVHHWVLLRIIGTHRKRPDHRMTSYSRALEI
TRCESIVTTLRIRRLLWAGTLIRMSGGRLPKRIVFENLEGVVRRGRGGKD
KEWTDCVQSDIWALGITGDWKATALEAEVWV*
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mRNA from alignment at F-distichus_contig103915:254..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103915.349.1 ID=mRNA_F-distichus_contig103915.349.1|Name=mRNA_F-distichus_contig103915.349.1|organism=Fucus distichus monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at F-distichus_contig103915:254..649+ (Fucus distichus monoicous)
ATACTGTACGTATGCAGTACGTGGACCCTCCGCCAGGAACACTACGTCAA ACTCCGCACCGTACACCACTGGGTCTTGCTTCGCATCATCGGGACACATC GCAAGAGACCAGACCATCGGATGACCTCGTACAGCCGTGCGCTTGAAATA ACCCGCTGCGAGAGCATTGTGACAACGTTGCGCATAAGAAGACTTTTGTG GGCGGGGACGCTCATCCGAATGAGCGGCGGGCGGCTGCCAAAGCGAATCG TTTTCGAAAACCTTGAGGGTGTAGTGCGGAGAGGACGGGGTGGGAAGGAT AAAGAGTGGACCGATTGCGTACAGAGCGACATCTGGGCGTTGGGCATAAC GGGAGATTGGAAGGCGACGGCGTTAGAGGCTGAGGTGTGGGTGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig103915:254..649+

>mRNA_F-distichus_contig103915.349.1 ID=mRNA_F-distichus_contig103915.349.1|Name=mRNA_F-distichus_contig103915.349.1|organism=Fucus distichus monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at F-distichus_contig103915:254..649+ (Fucus distichus monoicous)
ATACTGTACGTATGCAGTACGTGGACCCTCCGCCAGGAACACTACGTCAA
ACTCCGCACCGTACACCACTGGGTCTTGCTTCGCATCATCGGGACACATC
GCAAGAGACCAGACCATCGGATGACCTCGTACAGCCGTGCGCTTGAAATA
ACCCGCTGCGAGAGCATTGTGACAACGTTGCGCATAAGAAGACTTTTGTG
GGCGGGGACGCTCATCCGAATGAGCGGCGGGCGGCTGCCAAAGCGAATCG
TTTTCGAAAACCTTGAGGGTGTAGTGCGGAGAGGACGGGGTGGGAAGGAT
AAAGAGTGGACCGATTGCGTACAGAGCGACATCTGGGCGTTGGGCATAAC
GGGAGATTGGAAGGCGACGGCGTTAGAGGCTGAGGTGTGGGTGTGAATAC
TGTACGTATGCAGTACGTGGACCCTCCGCCAGGAACACTACGTCAAACTC
CGCACCGTACACCACTGGGTCTTGCTTCGCATCATCGGGACACATCGCAA
GAGACCAGACCATCGGATGACCTCGTACAGCCGTGCGCTTGAAATAACCC
GCTGCGAGAGCATTGTGACAACGTTGCGCATAAGAAGACTTTTGTGGGCG
GGGACGCTCATCCGAATGAGCGGCGGGCGGCTGCCAAAGCGAATCGTTTT
CGAAAACCTTGAGGGTGTAGTGCGGAGAGGACGGGGTGGGAAGGATAAAG
AGTGGACCGATTGCGTACAGAGCGACATCTGGGCGTTGGGCATAACGGGA
GATTGGAAGGCGACGGCGTTAGAGGCTGAGGTGTGGGTGTGA
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