mRNA_F-distichus_contig103884.345.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103884.345.1
Unique NamemRNA_F-distichus_contig103884.345.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: D8LRW8_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW8_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 7.030e-47
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    1 KVAAVAEREGLYLKQHTAAPGLRGGPRAGE-GASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYRGRVNSYLNLKK 327
            KVAAV   + LYLKQ+T APGLRGGP+ G+ GA RIAMHYKF+L H FER P+APAV+IVEDDLL SPDFLEY E NAP+LERD  TLVLSAWNDNGY GRV+    LK+
Sbjct:  108 KVAAVVREQNLYLKQNTQAPGLRGGPKPGDNGAKRIAMHYKFALQHAFERRPQAPAVVIVEDDLLFSPDFLEYLETNAPVLERDPTTLVLSAWNDNGYAGRVSDKAELKR 217
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A6H5JNF6_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.560e-45
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    1 KVAAVAEREGLYLKQHTAAPGLRGGPRAGE-GASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYRGRVNSYLNLKK 327
            KVAAV   + LYLKQ+T APGLRGGP+ G+ GA RIAMHYKF+L H FER P+APAV+IVEDDLL SPDFLEY E NAP+LERD  TLVLSAWNDNGY GRV+    LK+
Sbjct:  149 KVAAVVREQNLYLKQNTQAPGLRGGPKPGDNGAKRIAMHYKFALQHAFERHPQAPAVVIVEDDLLFSPDFLEYLETNAPVLERDPTTLVLSAWNDNGYTGRVSDKAELKR 258
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A7S3XJJ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJJ4_HETAK)

HSP 1 Score: 114 bits (285), Expect = 4.290e-29
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    7 AAVAEREGLYLKQHTAAPGLRGGPRAGEGASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYRGRV 303
            AAV  + G+ L Q+     LRGG  A +GA+ I  HYKF+L   F+   +APAV++VEDD   SPDFLEYFEANAP+L+RDA T VLSAWNDNG+ G+V
Sbjct:    4 AAVVRQLGVRLVQNEGRTKLRGGA-AQDGAALICSHYKFALGWAFDEHKDAPAVLVVEDDFYFSPDFLEYFEANAPLLDRDASTFVLSAWNDNGFWGKV 101
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A7S2STA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STA6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.700e-25
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   64 LRGGPRAGEGASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYRGRVNSYLNLKK 327
            LRG  R  +G   IA HYKF+L+  F R PEAPA+++VEDD   SPDFLEYF + APILERD  T V+S+WNDNG  G+V+    L++
Sbjct:   68 LRG--RRMDGGQLIAAHYKFTLSEAFSRRPEAPALVVVEDDFRFSPDFLEYFRSVAPILERDPTTYVISSWNDNGLAGKVSDSRALQR 153
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A7S2DMU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DMU5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 9.410e-22
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   88 EGASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYRGRV 303
            +GA RIA HYK++L H  +  P +P +I+VEDD L SPDF++YF+A  P+LERD  T V+SAWNDNG + RV
Sbjct:  139 DGAERIASHYKWALQHALDSSPSSPGIIVVEDDFLFSPDFIDYFKAVGPLLERDPTTFVVSAWNDNGLKDRV 210
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: F0YJ59_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ59_AURAN)

HSP 1 Score: 85.9 bits (211), Expect = 1.440e-19
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:  100 RIAMHYKFSLNHVF-EREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGY 291
            RIA HY+FSL+    E  P+APAV++VEDDLL +PDFL+YF A AP LERD    V SAWNDNG+
Sbjct:    1 RIARHYRFSLDWALAECFPDAPAVVVVEDDLLFAPDFLDYFGAVAPALERDESLFVASAWNDNGF 65
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A7R9U447_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U447_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.880e-19
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    4 VAAVAEREGLYLKQ--HTAAPGLRGGPRAGEGASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYR 294
            VA V    G+ L Q  H  AP  R      + +  IA+HYKF+L   FER P AP +IIVE+DL  SPDF EYF  + P L+ D   ++LSAWNDNG+R
Sbjct:  126 VAGVVREAGIELVQSHHPPAPTRR------DPSVPIALHYKFALKKAFERYPTAPGIIIVEEDLTFSPDFYEYFSHSVPALDHDDSIMLLSAWNDNGFR 218
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A7S3PPY5_9STRA (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PPY5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.360e-18
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   88 EGASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYRGRVN 306
            +G ++IAMHY +SL   FE  P+APA++++EDD L SPDF+E+F + AP +E D    + SAWNDNG++  VN
Sbjct:  291 DGGAKIAMHYGYSLRKAFETFPDAPAIVVIEDDFLFSPDFMEFFVSVAPTVETDDTLWIASAWNDNGFQENVN 363
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A812K4I4_9DINO (GNTI protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812K4I4_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 9.550e-18
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 KVAAVAEREGLYLKQHTAAPGLRGGPRAGEGASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGY 291
            +VA V +   +    H A P +  G R+   A RIA HY++S++  F+     P +IIVEDDL  SPDFLEYF+A AP+L+ D+   ++SAWNDNG+
Sbjct:  134 EVAKVVDSMNISRISHDAKPPVNSGWRS--AALRIARHYRWSIDAAFKHFNHTPGIIIVEDDLRFSPDFLEYFQAAAPVLDCDSTLWIVSAWNDNGF 228
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BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Match: A0A813CNS4_9DINO (RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CNS4_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 1.210e-17
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 KVAAVAEREGLYLKQHTAAPGLRGGPRAGEGASRIAMHYKFSLNHVFEREPEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGY 291
            +VA V +   +    H A P +  G R+   A RIA HY++S++  F+     P +IIVEDDL  SPDFLEYF+A AP+L+ D+   ++SAWNDNG+
Sbjct:  134 EVAKVVDSMNISRISHDAKPPVNSGWRS--AALRIARHYRWSIDAAFKHFNHTPGIIIVEDDLRFSPDFLEYFQAAAPVLDCDSTLWIVSAWNDNGF 228
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103884.345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRW8_ECTSI7.030e-4771.82Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5JNF6_9PHAE1.560e-4571.82GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S3XJJ4_HETAK4.290e-2957.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2STA6_9STRA4.700e-2555.68Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2DMU5_9STRA9.410e-2256.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YJ59_AURAN1.440e-1963.08Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7R9U447_9STRA3.880e-1948.48Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3PPY5_9STRA1.360e-1850.68Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
A0A812K4I4_9DINO9.550e-1845.36GNTI protein (Fragment) n=1 Tax=Symbiodinium necro... [more]
A0A813CNS4_9DINO1.210e-1745.36RPS13 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103884contigF-distichus_contig103884:167..1539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue6.5e-38
Seed eggNOG ortholog2880.D8LRW8
Preferred nameMGAT1
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.4505513-CDS-F-distichus_contig103884:166..3461622928958.4505513-CDS-F-distichus_contig103884:166..346Fucus distichus monoicousCDSF-distichus_contig103884 167..346 -
1690885082.1202948-CDS-F-distichus_contig103884:166..3461690885082.1202948-CDS-F-distichus_contig103884:166..346Fucus distichus monoicousCDSF-distichus_contig103884 167..346 -
1622928958.4760973-CDS-F-distichus_contig103884:1383..15391622928958.4760973-CDS-F-distichus_contig103884:1383..1539Fucus distichus monoicousCDSF-distichus_contig103884 1384..1539 -
1690885082.1333182-CDS-F-distichus_contig103884:1383..15391690885082.1333182-CDS-F-distichus_contig103884:1383..1539Fucus distichus monoicousCDSF-distichus_contig103884 1384..1539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103884.345.1prot_F-distichus_contig103884.345.1Fucus distichus monoicouspolypeptideF-distichus_contig103884 167..1539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103884.345.1

>prot_F-distichus_contig103884.345.1 ID=prot_F-distichus_contig103884.345.1|Name=mRNA_F-distichus_contig103884.345.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp
KVAAVAEREGLYLKQHTAAPGLRGGPRAGEGASRIAMHYKFSLNHVFERE
PEAPAVIIVEDDLLLSPDFLEYFEANAPILERDAGTLVLSAWNDNGYRGR
VNSYLNLKKKS*
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mRNA from alignment at F-distichus_contig103884:167..1539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103884.345.1 ID=mRNA_F-distichus_contig103884.345.1|Name=mRNA_F-distichus_contig103884.345.1|organism=Fucus distichus monoicous|type=mRNA|length=1373bp|location=Sequence derived from alignment at F-distichus_contig103884:167..1539- (Fucus distichus monoicous)
AAGGTGGCTGCGGTGGCGGAAAGAGAGGGCCTTTACCTCAAGCAGCACAC
CGCAGCGCCAGGACTCAGGGGCGGCCCGAGGGCGGGAGAAGGTGCTTCCA
GGATAGCGATGCACTACAAGTTTTCTCTGAATCACGTGTTCGAGAGGGAA
CCAGAGGTGTGGGATGTGTATACAGTATATGATAAGTGTATGTGCTTGTG
TGTGTGTGTGTGTGTTTATTTCTTTAATTGCACACAACCGTCATCCTAGC
AATCCGACTACACCCTTGTCATCCTAGTTATTCTATGCTACTCGCATTCG
TCCTCCCAAGGGGTATGAAGGGATCAAGGATAACTTGCTACGAAAATATC
TGGTCAGACGCGATAATGGAGACACACTCTCTCTAAAGTCCTTATTTAAG
TATTAAGCCCTGAGCGGGTCGTGTGTGTGTATGTGTATGTGTGTGTGTGT
GTGTGAGGAGAGTGTGTGTGCGCGCGAAGAACGCACGACCGACCGTTTGA
AGGTCGAGGACCTGATTTAACGTATCAAACGCATCAAACACACCCATGAT
ACTGTACGAGTATGAAATGCCAGGTACATTTCTATTTTTTTCAACACGTG
TGATTCAATAATACTGTACAACACTTATACTGTACACCATGTTCAACGCA
CTCTACGTCGCCCGGGATCGGGGTATGAATATGGGGAGGAGGACGGAGGG
GGGGGGAGGGTCTTTTATTTTATTTTTTTCTTTAATCTCACTTATAGCCG
ATGGACCTCATCATTACCATCCTGCCTGTGGTCATTAAGGATCTTCCCAT
CTCTCATTTTTTTTATCGCGATGCAAGTTCAGCAATCTTACAACTCGTCA
ACCAATGGTTGAATTTTACTTACTGGCTCACGTTCCCACGCTTTCCGTTA
CGGAAAAAAGAACACAAATCCTACTTTGGTCAAGAATCGAACTCACGACT
TCCGCACTAGCAGGTGTGCAGACTACCTACTAGACCACTCGCCAACAAGA
AAAAACAATTTATGTTGCGCCCAATTGTTTTCGCTAGAGTCGCATTCCGA
TATACTCCGGGTGCCCGGACCCGGTCATCCACACCGAGACCCATGCTGAC
GGACATTATATACAAGACACTTGACGATTACTGTCTTCACGAGTCGCTTC
GGTCGCCGCCGCAACTTCCTCCATCCGTGGTGATGATCGTCAGGCTCCGG
CAGTGATCATCGTCGAGGACGACCTCCTGCTTTCACCGGATTTCCTGGAG
TATTTTGAGGCGAATGCGCCCATCCTGGAGAGAGATGCGGGCACTCTGGT
GCTGAGCGCCTGGAATGACAACGGCTACAGGGGAAGGGTAAATAGTTATC
TTAACTTGAAAAAAAAATCTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig103884:167..1539-

>mRNA_F-distichus_contig103884.345.1 ID=mRNA_F-distichus_contig103884.345.1|Name=mRNA_F-distichus_contig103884.345.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig103884:167..1539- (Fucus distichus monoicous)
AAGGTGGCTGCGGTGGCGGAAAGAGAGGGCCTTTACCTCAAGCAGCACAC
CGCAGCGCCAGGACTCAGGGGCGGCCCGAGGGCGGGAGAAGGTGCTTCCA
GGATAGCGATGCACTACAAGTTTTCTCTGAATCACGTGTTCGAGAGGGAA
CCAGAGAAGGTGGCTGCGGTGGCGGAAAGAGAGGGCCTTTACCTCAAGCA
GCACACCGCAGCGCCAGGACTCAGGGGCGGCCCGAGGGCGGGAGAAGGTG
CTTCCAGGATAGCGATGCACTACAAGTTTTCTCTGAATCACGTGTTCGAG
AGGGAACCAGAGGCTCCGGCAGTGATCATCGTCGAGGACGACCTCCTGCT
TTCACCGGATTTCCTGGAGTATTTTGAGGCGAATGCGCCCATCCTGGAGA
GAGATGCGGGCACTCTGGTGCTGAGCGCCTGGAATGACAACGGCTACAGG
GGAAGGGTAAATAGTTATCTTAACTTGAAAAAAAAATCTTGAGCTCCGGC
AGTGATCATCGTCGAGGACGACCTCCTGCTTTCACCGGATTTCCTGGAGT
ATTTTGAGGCGAATGCGCCCATCCTGGAGAGAGATGCGGGCACTCTGGTG
CTGAGCGCCTGGAATGACAACGGCTACAGGGGAAGGGTAAATAGTTATCT
TAACTTGAAAAAAAAATCTTGA
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