mRNA_F-distichus_contig103844.341.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103844.341.1
Unique NamemRNA_F-distichus_contig103844.341.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103844.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103844contigF-distichus_contig103844:1570..1755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.8915887-CDS-F-distichus_contig103844:1569..17551622928957.8915887-CDS-F-distichus_contig103844:1569..1755Fucus distichus monoicousCDSF-distichus_contig103844 1570..1755 +
1690885081.8961194-CDS-F-distichus_contig103844:1569..17551690885081.8961194-CDS-F-distichus_contig103844:1569..1755Fucus distichus monoicousCDSF-distichus_contig103844 1570..1755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103844.341.1prot_F-distichus_contig103844.341.1Fucus distichus monoicouspolypeptideF-distichus_contig103844 1570..1755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103844.341.1

>prot_F-distichus_contig103844.341.1 ID=prot_F-distichus_contig103844.341.1|Name=mRNA_F-distichus_contig103844.341.1|organism=Fucus distichus monoicous|type=polypeptide|length=62bp
FIRSNHFKGARPGYVFHKGASGLGYYFDKVFAARAAREDMQRRVGDRDGG
GRVALPREDQPR
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mRNA from alignment at F-distichus_contig103844:1570..1755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103844.341.1 ID=mRNA_F-distichus_contig103844.341.1|Name=mRNA_F-distichus_contig103844.341.1|organism=Fucus distichus monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at F-distichus_contig103844:1570..1755+ (Fucus distichus monoicous)
TTCATCCGCTCCAATCACTTCAAGGGCGCGCGGCCGGGCTACGTATTCCA
CAAGGGCGCATCGGGTCTCGGTTACTACTTCGATAAAGTTTTCGCTGCCA
GGGCGGCGCGCGAAGATATGCAGCGGCGTGTTGGTGATCGTGACGGGGGA
GGCAGGGTGGCGTTACCACGAGAGGACCAGCCGAGA
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Coding sequence (CDS) from alignment at F-distichus_contig103844:1570..1755+

>mRNA_F-distichus_contig103844.341.1 ID=mRNA_F-distichus_contig103844.341.1|Name=mRNA_F-distichus_contig103844.341.1|organism=Fucus distichus monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at F-distichus_contig103844:1570..1755+ (Fucus distichus monoicous)
TTCATCCGCTCCAATCACTTCAAGGGCGCGCGGCCGGGCTACGTATTCCA
CAAGGGCGCATCGGGTCTCGGTTACTACTTCGATAAAGTTTTCGCTGCCA
GGGCGGCGCGCGAAGATATGCAGCGGCGTGTTGGTGATCGTGACGGGGGA
GGCAGGGTGGCGTTACCACGAGAGGACCAGCCGAGATTCATCCGCTCCAA
TCACTTCAAGGGCGCGCGGCCGGGCTACGTATTCCACAAGGGCGCATCGG
GTCTCGGTTACTACTTCGATAAAGTTTTCGCTGCCAGGGCGGCGCGCGAA
GATATGCAGCGGCGTGTTGGTGATCGTGACGGGGGAGGCAGGGTGGCGTT
ACCACGAGAGGACCAGCCGAGA
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