mRNA_F-distichus_contig1038.340.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1038.340.1
Unique NamemRNA_F-distichus_contig1038.340.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig1038.340.1 vs. uniprot
Match: A0A3Q7Y1T6_CICAR (uncharacterized protein LOC113787151 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A3Q7Y1T6_CICAR)

HSP 1 Score: 54.7 bits (130), Expect = 9.810e-6
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    1 NALLKVLDKENDIMEMVIDIGSPSKAWRALKNMVDESKEVAYD---RVKREFETLEMGADETVTEYFSRVNIALTKIQRHNVVMSEREIKRVILGSLMSRF 294
            N L + +DK   I++ +I   +  + W +LK     S+ V  +   R++R+FE LEM  +ET+TEYFS+V +  T+++     M + +I   IL +L  +F
Sbjct:   71 NYLFQAIDKS--ILKTIIQKNTSKQLWDSLKIKYQGSERVQREQLQRLRRDFEILEMKENETITEYFSKVLLVATEMRNMGEDMQDNKIVDKILRTLSEKF 169
[Close]
BLAST of mRNA_F-distichus_contig1038.340.1 vs. uniprot
Match: UPI000B90327D (uncharacterized protein LOC110944782 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B90327D)

HSP 1 Score: 53.9 bits (128), Expect = 1.250e-5
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:    1 NALLKVLDKENDIMEMVIDIGSPSKAWRALKNMVDES---KEVAYDRVKREFETLEMGADETVTEYFSRVNIALTKIQRHNVVMSEREIKRVILGSLMSRF 294
            N L +++DK+  I++ +    S  + W A+K     +   K     R+++EFETLEM   E+VT+YFSRV +    +Q     M+E ++   +L SL   F
Sbjct:   73 NYLFQLIDKQ--ILKTITQKESAKQIWDAMKTKYKGNTRIKRAQLQRLRKEFETLEMKEGESVTDYFSRVMVISNNMQNCGEDMTEVKVVEKVLHSLTENF 171
[Close]
BLAST of mRNA_F-distichus_contig1038.340.1 vs. uniprot
Match: A0A6D2HJA6_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJA6_9BRAS)

HSP 1 Score: 53.9 bits (128), Expect = 2.740e-5
Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:    1 NALLKVLDKENDIMEMVIDIGSPSKAWRALKNMV---DESKEVAYDRVKREFETLEMGADETVTEYFSRVNIALTKIQRHNVVMSEREIKRVILGSLMSRFPSEMSVYAMQCDFELKDLETGLARAEKLQSDQKIR 399
            N L + +DK   I++ VI   +  + W +LK      +  K     R++REFE LEM   +++TEYFSRV +  T ++     M + +I   IL +L  RF     V +++   ++  L     ++  L  +QKI+
Sbjct:   70 NYLFQAIDKS--ILKTVIQKDTAKQLWDSLKIKYQGNERVKRAQLQRLRREFEILEMKETKSITEYFSRVLLTATDMRNLGEDMEDTKIVEKILRTLSERFT--YIVCSLEESKDIDSLTVDALQSSLLLHEQKIQ 201
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1038.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3Q7Y1T6_CICAR9.810e-632.67uncharacterized protein LOC113787151 n=1 Tax=Cicer... [more]
UPI000B90327D1.250e-532.67uncharacterized protein LOC110944782 n=1 Tax=Helia... [more]
A0A6D2HJA6_9BRAS2.740e-529.41CCHC-type domain-containing protein n=1 Tax=Microt... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1038contigF-distichus_contig1038:22790..23329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.8548265-CDS-F-distichus_contig1038:22789..233291622928957.8548265-CDS-F-distichus_contig1038:22789..23329Fucus distichus monoicousCDSF-distichus_contig1038 22790..23329 +
1690885081.8807867-CDS-F-distichus_contig1038:22789..233291690885081.8807867-CDS-F-distichus_contig1038:22789..23329Fucus distichus monoicousCDSF-distichus_contig1038 22790..23329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1038.340.1prot_F-distichus_contig1038.340.1Fucus distichus monoicouspolypeptideF-distichus_contig1038 22790..23329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1038.340.1

>prot_F-distichus_contig1038.340.1 ID=prot_F-distichus_contig1038.340.1|Name=mRNA_F-distichus_contig1038.340.1|organism=Fucus distichus monoicous|type=polypeptide|length=180bp
NALLKVLDKENDIMEMVIDIGSPSKAWRALKNMVDESKEVAYDRVKREFE
TLEMGADETVTEYFSRVNIALTKIQRHNVVMSEREIKRVILGSLMSRFPS
EMSVYAMQCDFELKDLETGLARAEKLQSDQKIRSTSSHALAAARVGGGQI
ESGGGACGRGRHGRHSSRRHNDGRGRYQQQ
back to top

mRNA from alignment at F-distichus_contig1038:22790..23329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1038.340.1 ID=mRNA_F-distichus_contig1038.340.1|Name=mRNA_F-distichus_contig1038.340.1|organism=Fucus distichus monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at F-distichus_contig1038:22790..23329+ (Fucus distichus monoicous)
AATGCACTGTTGAAGGTTCTAGATAAGGAAAACGATATCATGGAGATGGT
GATAGATATAGGTTCCCCCTCCAAGGCATGGCGTGCACTCAAAAATATGG
TAGACGAGTCTAAGGAAGTCGCATATGATAGGGTGAAAAGAGAATTCGAA
ACACTTGAGATGGGAGCAGATGAGACGGTAACAGAGTATTTTTCTCGTGT
AAACATCGCACTAACAAAGATCCAGAGACACAATGTCGTAATGTCTGAAC
GAGAGATCAAGCGCGTAATACTGGGTAGCTTGATGTCCCGCTTCCCGAGT
GAAATGTCTGTGTATGCGATGCAATGTGATTTTGAATTGAAGGACCTGGA
AACTGGGCTGGCTCGTGCGGAGAAGCTTCAGTCAGACCAGAAGATAAGGA
GCACCTCATCCCATGCGTTAGCCGCTGCCCGGGTGGGCGGCGGTCAAATC
GAGAGTGGAGGTGGAGCTTGTGGACGAGGTCGGCACGGCAGGCATTCAAG
CAGGCGCCACAACGATGGTCGTGGCCGATATCAGCAACAG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig1038:22790..23329+

>mRNA_F-distichus_contig1038.340.1 ID=mRNA_F-distichus_contig1038.340.1|Name=mRNA_F-distichus_contig1038.340.1|organism=Fucus distichus monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at F-distichus_contig1038:22790..23329+ (Fucus distichus monoicous)
AATGCACTGTTGAAGGTTCTAGATAAGGAAAACGATATCATGGAGATGGT
GATAGATATAGGTTCCCCCTCCAAGGCATGGCGTGCACTCAAAAATATGG
TAGACGAGTCTAAGGAAGTCGCATATGATAGGGTGAAAAGAGAATTCGAA
ACACTTGAGATGGGAGCAGATGAGACGGTAACAGAGTATTTTTCTCGTGT
AAACATCGCACTAACAAAGATCCAGAGACACAATGTCGTAATGTCTGAAC
GAGAGATCAAGCGCGTAATACTGGGTAGCTTGATGTCCCGCTTCCCGAGT
GAAATGTCTGTGTATGCGATGCAATGTGATTTTGAATTGAAGGACCTGGA
AACTGGGCTGGCTCGTGCGGAGAAGCTTCAGTCAGACCAGAAGATAAGGA
GCACCTCATCCCATGCGTTAGCCGCTGCCCGGGTGGGCGGCGGTCAAATC
GAGAGTGGAGGTGGAGCTTGTGGACGAGGTCGGCACGGCAGGCATTCAAG
CAGGCGCCACAACGATGGTCGTGGCCGATATCAGCAACAGAATGCACTGT
TGAAGGTTCTAGATAAGGAAAACGATATCATGGAGATGGTGATAGATATA
GGTTCCCCCTCCAAGGCATGGCGTGCACTCAAAAATATGGTAGACGAGTC
TAAGGAAGTCGCATATGATAGGGTGAAAAGAGAATTCGAAACACTTGAGA
TGGGAGCAGATGAGACGGTAACAGAGTATTTTTCTCGTGTAAACATCGCA
CTAACAAAGATCCAGAGACACAATGTCGTAATGTCTGAACGAGAGATCAA
GCGCGTAATACTGGGTAGCTTGATGTCCCGCTTCCCGAGTGAAATGTCTG
TGTATGCGATGCAATGTGATTTTGAATTGAAGGACCTGGAAACTGGGCTG
GCTCGTGCGGAGAAGCTTCAGTCAGACCAGAAGATAAGGAGCACCTCATC
CCATGCGTTAGCCGCTGCCCGGGTGGGCGGCGGTCAAATCGAGAGTGGAG
GTGGAGCTTGTGGACGAGGTCGGCACGGCAGGCATTCAAGCAGGCGCCAC
AACGATGGTCGTGGCCGATATCAGCAACAG
back to top