mRNA_F-distichus_contig10378.339.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10378.339.1
Unique NamemRNA_F-distichus_contig10378.339.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10378.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10378contigF-distichus_contig10378:6064..9335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1526
Cds size1524
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10378.339.1prot_F-distichus_contig10378.339.1Fucus distichus monoicouspolypeptideF-distichus_contig10378 6064..9335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.7389503-CDS-F-distichus_contig10378:6063..64441622928957.7389503-CDS-F-distichus_contig10378:6063..6444Fucus distichus monoicousCDSF-distichus_contig10378 6064..6444 -
1690885081.8204186-CDS-F-distichus_contig10378:6063..64441690885081.8204186-CDS-F-distichus_contig10378:6063..6444Fucus distichus monoicousCDSF-distichus_contig10378 6064..6444 -
1622928957.7579033-CDS-F-distichus_contig10378:6801..74221622928957.7579033-CDS-F-distichus_contig10378:6801..7422Fucus distichus monoicousCDSF-distichus_contig10378 6802..7422 -
1690885081.8298588-CDS-F-distichus_contig10378:6801..74221690885081.8298588-CDS-F-distichus_contig10378:6801..7422Fucus distichus monoicousCDSF-distichus_contig10378 6802..7422 -
1622928957.770461-CDS-F-distichus_contig10378:7954..82061622928957.770461-CDS-F-distichus_contig10378:7954..8206Fucus distichus monoicousCDSF-distichus_contig10378 7955..8206 -
1690885081.8400002-CDS-F-distichus_contig10378:7954..82061690885081.8400002-CDS-F-distichus_contig10378:7954..8206Fucus distichus monoicousCDSF-distichus_contig10378 7955..8206 -
1622928957.7831652-CDS-F-distichus_contig10378:8502..85921622928957.7831652-CDS-F-distichus_contig10378:8502..8592Fucus distichus monoicousCDSF-distichus_contig10378 8503..8592 -
1690885081.8498335-CDS-F-distichus_contig10378:8502..85921690885081.8498335-CDS-F-distichus_contig10378:8502..8592Fucus distichus monoicousCDSF-distichus_contig10378 8503..8592 -
1622928957.7964313-CDS-F-distichus_contig10378:8866..89981622928957.7964313-CDS-F-distichus_contig10378:8866..8998Fucus distichus monoicousCDSF-distichus_contig10378 8867..8998 -
1690885081.859879-CDS-F-distichus_contig10378:8866..89981690885081.859879-CDS-F-distichus_contig10378:8866..8998Fucus distichus monoicousCDSF-distichus_contig10378 8867..8998 -
1622928957.8094406-CDS-F-distichus_contig10378:9287..93351622928957.8094406-CDS-F-distichus_contig10378:9287..9335Fucus distichus monoicousCDSF-distichus_contig10378 9288..9335 -
1690885081.8687234-CDS-F-distichus_contig10378:9287..93351690885081.8687234-CDS-F-distichus_contig10378:9287..9335Fucus distichus monoicousCDSF-distichus_contig10378 9288..9335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10378.339.1

>prot_F-distichus_contig10378.339.1 ID=prot_F-distichus_contig10378.339.1|Name=mRNA_F-distichus_contig10378.339.1|organism=Fucus distichus monoicous|type=polypeptide|length=508bp
GAARASLTVAGDEDTKAVGSNNDEDSDRSSDGGDFHHRRGGRKGHENVDD
TAELTAQTREAHMQREFMEKRHKTLATKLAGVKLDAARHQRTKLAENNAL
ISECNSLRRENTYLKRQNDFLRREGKQTAGIAEQQPVQQRGRLAAPPLDV
VGSEKTGLDVPDATGSGGGFAGDEARLDFPRHLQRNQPETKTSLLSMPAP
WDPAKATVAMTSTRTAKEPETRAMHISEPEVTKRNDARTLMSWGSKAVIK
DENMGKGGMRENDTGKNGESANKLLPKRQRYQQQQEQKKREEDQAVGAEK
APEQLQELVFLSSPSLNHLYSLRNPLSQHRQPLSGYNRHQVLGKVGAERG
RTETGARGVGLTSASSGTGLVKGGTRGLYVQAVLASNTLHLERALDDKER
ELSLQRSENSTLREQIRAMEAGQTNNTSSNWYLSKNNINGIPLSRSLLAP
TWGGSGRGGTSPYPIADGSRPVTPVSGWGIDEQGAGEGDSGKRVAAGLSA
PPPGAHVA
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mRNA from alignment at F-distichus_contig10378:6064..9335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10378.339.1 ID=mRNA_F-distichus_contig10378.339.1|Name=mRNA_F-distichus_contig10378.339.1|organism=Fucus distichus monoicous|type=mRNA|length=3272bp|location=Sequence derived from alignment at F-distichus_contig10378:6064..9335- (Fucus distichus monoicous)
GGTGCAGCACGTGCATCGCTCACAGTCGCAGGCGACGAGGACACGAAGGT
CTCGTGAGAGAGAGATACGACGGGCGAGGGTAGAGCGCGGGGCGCGACTT
TTGTACTCCATTTTTAACTTCTCTCTCGTTACTGGTTCTAATCCTCTTTT
TTTTTCCTGCCCTATTGTTGGAATTAACGCTAGAAAGATAGCCACCCAGG
AGAAGAAACCATTTCCTCGGGCCATCCTTTCCTCGTCGTCAATTATGTCG
GGTCACCGGAGACAGAGAAGTACATGCGTATTATGCGAGATGCTACACCC
ATGCCCTTTTGCCCACCCGCCCGTCGTGTGTGTGTAGGCGGTCGGCAGCA
ACAATGACGAGGACTCTGATAGGTCTAGCGATGGCGGAGATTTCCACCAT
AGACGAGGTGGTCGCAAGGGCCACGAAAACGTCGACGATACCGCAGAGCT
AACGGCGCAGACGCGAGAGGTACATTTCAGACTACCGTTTTAACGCTGTA
GCGACGTACTCATCATGATACTGGAGGGTACGTTAGGATGGCACGAATCA
TTTTGTGGAGGCTCGGTCAACATAAACATGAACGTCCGACATTGCGCGGG
CATCGCCCGTCGCAGCGTCATTCAGAAATGTAAAGGTTATGGCGCTACTA
CGTTCCTTAATTCTTGGAGGTATATCGTTCTTGATTTCAGTATTATGTTC
ACAACTGTCGGCCGAAAATACAAATAAATAAACGCACAAGCAGGCTCACA
TGCAGCGCGAGTTCATGGAAAAGAGGCATAAGACACTCGCGACAAAGCTC
GCCGGTGTCAAGCTCGACGCGGCTAGGCACCAGGTCAGGACAAATACGCT
CGATATTTTGCTGCATGCCTGCTGCTGTGGTCATAGAACTTTGCTCGACA
CGCGCTCTTTCGTCATCATTCCCGTTTTACTTTCTCGCGGTTCGCCTGGC
AAGCTTCTCTGCGACCTACCAATCATGCCCGCGATCAACCCGCCATCCAT
ACGTTTTTGCTGGCATGCCCCGCCCATCACTGCCTTAGTTTCCCCAGGCT
AGCGAGGAATAAAGGGATTCCCGCGCGCACTTTTGCATCTCTGCCCTCTG
CCTTCGGTGATTATTGCCTCCCGAATTAGCGTACCAAGCTCGCCGAAAAC
AACGCCCTCATCTCTGAGTGTAACTCCCTCCGGAGGGAAAACACATACCT
CAAGCGCCAGAACGATTTCCTACGACGCGAGGGCAAGCAGACTGCGGGGA
TCGCTGAGCAACAGCCTGTCCAACAGCGCGGCCGACTGGCCGCTCCGCCG
CTCGACGTGGTGGGATCTGAAAAAACAGGGTTAGACGTACCCGATGCCAC
AGGCAGCGGCGGTGGTTTCGCCGGGGATGAGGTAAGGCCCTGTAGTTCCA
GTGATGGACTTTCGAGATCGATCGGAAAGCTTCCGTCGCCCATTTGCGGG
TGGTCCGTGTTTTCTCTTCCACTCTGTTGTATTTGGGGTACTGGCGCGCC
CATTATTCGTTTTTTTAGGTGATTGACAAAAACCTCTTGAGTACTTTCGA
TCTTCCAGATTCCTTGTCCTCATATGGTAAGTCAGGCCTGTAATCACACC
GTCCATCTAAATTGGAATCGTTTCAAACACAGCTGATGTCGTGAACTTGC
GCCCGGCCCCTTAGGGCCTAGGGTCAACTTGTGCATAAAAAGTGGTAGAA
ACTGCTGGTGAACCGGGGGGTTATCACGGAGGAGGTCCACCCGAAAGCAT
TTCCTCCCGCGTTCGTTAGCTCGAACCCCATCGCTCATCACCCAAACGGC
TCCTTTCTTAGCGATGCCGCACGCAAACAAGTCTATGACCGCTTCAACTA
GACTATGCCGTGCCTTACATTTTTATAGCTCCTTGATTGAACCCTGTTTG
ATACCAAGATTAGGCGCGTCTAGATTTCCCAAGGCATCTACAGCGGAATC
AACCGGAGACAAAAACAAGTCTACTCTCCATGCCAGCGCCGTGGGATCCA
GCCAAGGCCACGGTAGCGATGACATCAACACGGACGGCTAAAGAGCCTGA
AACCAGGGCGATGCATATTTCTGAACCCGAGGTCACGAAACGTAATGACG
CGCGAACATTAATGTCTTGGGGGTCGAAGGCCGTAATCAAAGACGAAAAC
ATGGGGAAAGGCGGGATGAGGGAAAATGACACGGGAAAAAATGGAGAAAG
TGCCAATAAGTTGCTTCCCAAGCGGCAGAGGTACCAGCAGCAGCAGGAGC
AGAAGAAGAGGGAAGAGGATCAGGCCGTTGGCGCCGAGAAAGCGCCGGAG
CAACTACAGGAGCTTGTCTTCTTGTCTTCGCCGTCTCTAAACCATTTGTA
CAGCTTGCGAAATCCACTGTCGCAACATCGACAGCCGCTGTCGGGGTACA
ACCGGCATCAGGTCCTAGGGAAAGTCGGTGCCGAGAGAGGAAGGACGGAA
ACCGGGGCACGTGGTGTGGGTTTGACCTCGGCCTCAAGTGGAACGGGCTT
GGTAAAGGGAGGGACAAGAGGGCTGTACGTTCAGGTGCTCCAAGAAAATA
ATCGATGGGCCGAATGCACCATTGCTATAATATTACCGCGGCAGTAAGCG
ACTCCTTGCAAAGCACCAAATTTATTTTCATCACGTGCTGCAAGGCGCAA
ATCTATCCCGTCCGCCCACCCCAGCCCCTTCAGCCCGATTCAACAACGGG
AGAAATACGAGCATGATCTGGCCGGATTCTGAGTTGCCCATAAGAGTTGA
CGACCGTTAGGTGTATGCCGAGAACATATTTCGCGAACCGAGGAACGGGT
GCCTCTCACCATCCATCTTGTGTTCTCAGTCCTTAGCCTTTACCGCCACG
AGCATATCCTGTTCCTTCCGCCACGTGAAACCGCCCGCCAGGCCGTCTTG
GCGAGTAACACCCTGCACCTTGAGCGAGCGCTCGACGACAAAGAGCGCGA
GCTGTCGCTGCAGCGAAGCGAAAATAGTACCCTCCGCGAGCAAATACGCG
CCATGGAGGCAGGGCAAACCAACAACACATCTAGCAATTGGTACCTGTCG
AAAAACAACATAAACGGTATCCCGCTTTCAAGATCTCTTCTCGCTCCGAC
CTGGGGTGGAAGCGGGCGAGGAGGAACGTCTCCATACCCCATTGCTGACG
GAAGCAGACCGGTGACCCCGGTATCCGGATGGGGCATTGATGAGCAAGGA
GCAGGGGAAGGTGACTCGGGGAAACGAGTCGCAGCGGGTCTTTCCGCACC
CCCTCCCGGGGCCCATGTCGCC
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Coding sequence (CDS) from alignment at F-distichus_contig10378:6064..9335-

>mRNA_F-distichus_contig10378.339.1 ID=mRNA_F-distichus_contig10378.339.1|Name=mRNA_F-distichus_contig10378.339.1|organism=Fucus distichus monoicous|type=CDS|length=3048bp|location=Sequence derived from alignment at F-distichus_contig10378:6064..9335- (Fucus distichus monoicous)
GGTGCAGCACGTGCATCGCTCACAGTCGCAGGCGACGAGGACACGAAGGG
TGCAGCACGTGCATCGCTCACAGTCGCAGGCGACGAGGACACGAAGGCGG
TCGGCAGCAACAATGACGAGGACTCTGATAGGTCTAGCGATGGCGGAGAT
TTCCACCATAGACGAGGTGGTCGCAAGGGCCACGAAAACGTCGACGATAC
CGCAGAGCTAACGGCGCAGACGCGAGAGGCGGTCGGCAGCAACAATGACG
AGGACTCTGATAGGTCTAGCGATGGCGGAGATTTCCACCATAGACGAGGT
GGTCGCAAGGGCCACGAAAACGTCGACGATACCGCAGAGCTAACGGCGCA
GACGCGAGAGGCTCACATGCAGCGCGAGTTCATGGAAAAGAGGCATAAGA
CACTCGCGACAAAGCTCGCCGGTGTCAAGCTCGACGCGGCTAGGCACCAG
GCTCACATGCAGCGCGAGTTCATGGAAAAGAGGCATAAGACACTCGCGAC
AAAGCTCGCCGGTGTCAAGCTCGACGCGGCTAGGCACCAGCGTACCAAGC
TCGCCGAAAACAACGCCCTCATCTCTGAGTGTAACTCCCTCCGGAGGGAA
AACACATACCTCAAGCGCCAGAACGATTTCCTACGACGCGAGGGCAAGCA
GACTGCGGGGATCGCTGAGCAACAGCCTGTCCAACAGCGCGGCCGACTGG
CCGCTCCGCCGCTCGACGTGGTGGGATCTGAAAAAACAGGGTTAGACGTA
CCCGATGCCACAGGCAGCGGCGGTGGTTTCGCCGGGGATGAGCGTACCAA
GCTCGCCGAAAACAACGCCCTCATCTCTGAGTGTAACTCCCTCCGGAGGG
AAAACACATACCTCAAGCGCCAGAACGATTTCCTACGACGCGAGGGCAAG
CAGACTGCGGGGATCGCTGAGCAACAGCCTGTCCAACAGCGCGGCCGACT
GGCCGCTCCGCCGCTCGACGTGGTGGGATCTGAAAAAACAGGGTTAGACG
TACCCGATGCCACAGGCAGCGGCGGTGGTTTCGCCGGGGATGAGGCGCGT
CTAGATTTCCCAAGGCATCTACAGCGGAATCAACCGGAGACAAAAACAAG
TCTACTCTCCATGCCAGCGCCGTGGGATCCAGCCAAGGCCACGGTAGCGA
TGACATCAACACGGACGGCTAAAGAGCCTGAAACCAGGGCGATGCATATT
TCTGAACCCGAGGTCACGAAACGTAATGACGCGCGAACATTAATGTCTTG
GGGGTCGAAGGCCGTAATCAAAGACGAAAACATGGGGAAAGGCGGGATGA
GGGAAAATGACACGGGAAAAAATGGAGAAAGTGCCAATAAGTTGCTTCCC
AAGCGGCAGAGGTACCAGCAGCAGCAGGAGCAGAAGAAGAGGGAAGAGGA
TCAGGCCGTTGGCGCCGAGAAAGCGCCGGAGCAACTACAGGAGCTTGTCT
TCTTGTCTTCGCCGTCTCTAAACCATTTGTACAGCTTGCGAAATCCACTG
TCGCAACATCGACAGCCGCTGTCGGGGTACAACCGGCATCAGGTCCTAGG
GAAAGTCGGTGCCGAGAGAGGAAGGACGGAAACCGGGGCACGTGGTGTGG
GTTTGACCTCGGCCTCAAGTGGAACGGGCTTGGTAAAGGGAGGGACAAGA
GGGCTGTACGTTCAGGCGCGTCTAGATTTCCCAAGGCATCTACAGCGGAA
TCAACCGGAGACAAAAACAAGTCTACTCTCCATGCCAGCGCCGTGGGATC
CAGCCAAGGCCACGGTAGCGATGACATCAACACGGACGGCTAAAGAGCCT
GAAACCAGGGCGATGCATATTTCTGAACCCGAGGTCACGAAACGTAATGA
CGCGCGAACATTAATGTCTTGGGGGTCGAAGGCCGTAATCAAAGACGAAA
ACATGGGGAAAGGCGGGATGAGGGAAAATGACACGGGAAAAAATGGAGAA
AGTGCCAATAAGTTGCTTCCCAAGCGGCAGAGGTACCAGCAGCAGCAGGA
GCAGAAGAAGAGGGAAGAGGATCAGGCCGTTGGCGCCGAGAAAGCGCCGG
AGCAACTACAGGAGCTTGTCTTCTTGTCTTCGCCGTCTCTAAACCATTTG
TACAGCTTGCGAAATCCACTGTCGCAACATCGACAGCCGCTGTCGGGGTA
CAACCGGCATCAGGTCCTAGGGAAAGTCGGTGCCGAGAGAGGAAGGACGG
AAACCGGGGCACGTGGTGTGGGTTTGACCTCGGCCTCAAGTGGAACGGGC
TTGGTAAAGGGAGGGACAAGAGGGCTGTACGTTCAGGCCGTCTTGGCGAG
TAACACCCTGCACCTTGAGCGAGCGCTCGACGACAAAGAGCGCGAGCTGT
CGCTGCAGCGAAGCGAAAATAGTACCCTCCGCGAGCAAATACGCGCCATG
GAGGCAGGGCAAACCAACAACACATCTAGCAATTGGTACCTGTCGAAAAA
CAACATAAACGGTATCCCGCTTTCAAGATCTCTTCTCGCTCCGACCTGGG
GTGGAAGCGGGCGAGGAGGAACGTCTCCATACCCCATTGCTGACGGAAGC
AGACCGGTGACCCCGGTATCCGGATGGGGCATTGATGAGCAAGGAGCAGG
GGAAGGTGACTCGGGGAAACGAGTCGCAGCGGGTCTTTCCGCACCCCCTC
CCGGGGCCCATGTCGCCGCCGTCTTGGCGAGTAACACCCTGCACCTTGAG
CGAGCGCTCGACGACAAAGAGCGCGAGCTGTCGCTGCAGCGAAGCGAAAA
TAGTACCCTCCGCGAGCAAATACGCGCCATGGAGGCAGGGCAAACCAACA
ACACATCTAGCAATTGGTACCTGTCGAAAAACAACATAAACGGTATCCCG
CTTTCAAGATCTCTTCTCGCTCCGACCTGGGGTGGAAGCGGGCGAGGAGG
AACGTCTCCATACCCCATTGCTGACGGAAGCAGACCGGTGACCCCGGTAT
CCGGATGGGGCATTGATGAGCAAGGAGCAGGGGAAGGTGACTCGGGGAAA
CGAGTCGCAGCGGGTCTTTCCGCACCCCCTCCCGGGGCCCATGTCGCC
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