mRNA_F-distichus_contig103744.333.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103744.333.1
Unique NamemRNA_F-distichus_contig103744.333.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103744.333.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.410e-11
Identity = 32/40 (80.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   76 RLRRRRRYLDLEVFCDDENGEELRLPPVRLDLRSDSRGTG 195
            R+R+RRRYLDL+VFCDDE+GEELRLPPVRLD+RS +RG+G
Sbjct: 1039 RVRQRRRYLDLQVFCDDEDGEELRLPPVRLDMRSSARGSG 1078
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BLAST of mRNA_F-distichus_contig103744.333.1 vs. uniprot
Match: A0A6H5KE41_9PHAE (UBA_e1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE41_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.410e-11
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   16 EVGVCMEEGDGESSARPRTN-----RLRRRRRYLDLEVFCDDENGEELRLPPVRLDLRSDSRGTG 195
            + G C    D   +A  R +     R RRR RYLDL+VFCDDE+GEELRLPPVRLD+RS +RG+G
Sbjct:  629 DTGGCHNSNDAAVTALERGSGGARVRQRRRSRYLDLQVFCDDEDGEELRLPPVRLDMRSSARGSG 693
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103744.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPC4_ECTSI1.410e-1180.00Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
A0A6H5KE41_9PHAE2.410e-1156.92UBA_e1_C domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103744contigF-distichus_contig103744:1263..1901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue4.8e-11
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
EC6.2.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Exons1
Model size639
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103744.333.1prot_F-distichus_contig103744.333.1Fucus distichus monoicouspolypeptideF-distichus_contig103744 1293..1700 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.0797358-UTR-F-distichus_contig103744:1262..12921622928957.0797358-UTR-F-distichus_contig103744:1262..1292Fucus distichus monoicousUTRF-distichus_contig103744 1263..1292 +
1690885081.5928838-UTR-F-distichus_contig103744:1262..12921690885081.5928838-UTR-F-distichus_contig103744:1262..1292Fucus distichus monoicousUTRF-distichus_contig103744 1263..1292 +
1622928957.116861-UTR-F-distichus_contig103744:1700..19011622928957.116861-UTR-F-distichus_contig103744:1700..1901Fucus distichus monoicousUTRF-distichus_contig103744 1701..1901 +
1690885081.6182547-UTR-F-distichus_contig103744:1700..19011690885081.6182547-UTR-F-distichus_contig103744:1700..1901Fucus distichus monoicousUTRF-distichus_contig103744 1701..1901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.1040819-CDS-F-distichus_contig103744:1292..17001622928957.1040819-CDS-F-distichus_contig103744:1292..1700Fucus distichus monoicousCDSF-distichus_contig103744 1293..1700 +
1690885081.609559-CDS-F-distichus_contig103744:1292..17001690885081.609559-CDS-F-distichus_contig103744:1292..1700Fucus distichus monoicousCDSF-distichus_contig103744 1293..1700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103744.333.1

>prot_F-distichus_contig103744.333.1 ID=prot_F-distichus_contig103744.333.1|Name=mRNA_F-distichus_contig103744.333.1|organism=Fucus distichus monoicous|type=polypeptide|length=136bp
MEEGDGESSARPRTNRLRRRRRYLDLEVFCDDENGEELRLPPVRLDLRSD
SRGTGTEAEGRGITGSSRGNGDDREGFMRSGQAALKRVTRRAWSALLANL
DLGQDDDDYHDHEREDDSAIARTVGERTTGGSGER*
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mRNA from alignment at F-distichus_contig103744:1263..1901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103744.333.1 ID=mRNA_F-distichus_contig103744.333.1|Name=mRNA_F-distichus_contig103744.333.1|organism=Fucus distichus monoicous|type=mRNA|length=639bp|location=Sequence derived from alignment at F-distichus_contig103744:1263..1901+ (Fucus distichus monoicous)
GAAGAAGTTGCAGAAGAAGTTGGCGTCTGCATGGAGGAGGGAGACGGGGA
AAGTTCAGCTAGACCACGGACCAATCGGCTGCGACGGCGACGGCGGTACT
TGGACTTGGAAGTTTTCTGCGATGACGAGAACGGGGAAGAGCTCCGGCTG
CCTCCCGTTCGTCTCGACCTGCGTAGCGATTCGCGCGGTACTGGAACAGA
GGCCGAGGGGCGGGGGATCACTGGCTCTTCAAGAGGGAACGGAGATGACC
GCGAAGGTTTCATGAGGTCTGGGCAGGCGGCTCTGAAGAGGGTCACGCGA
CGCGCGTGGTCGGCGTTGCTGGCGAATCTGGATTTGGGGCAGGATGACGA
TGATTATCATGATCACGAGCGGGAGGACGATAGCGCCATCGCTAGAACGG
TTGGGGAGAGGACGACGGGCGGCAGTGGCGAGAGATGACACGACGGGATA
TAAAGACTTGGTGTGTACTGCTTTTGGCCGCCCGTTTCCTTTCCGTCTTA
GTATGGTGTACCCGAAGGTACGTAGTTTGAAGCTAGATTAGTTTTTTTGT
CAGATGGATCACCGTCACAGCTATCTTAACACAGCTCTCGTAGTACTGTT
TGTGTGGTGCGTTGTTCTGAGAGATGCCGTGCGTTTTCG
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Coding sequence (CDS) from alignment at F-distichus_contig103744:1263..1901+

>mRNA_F-distichus_contig103744.333.1 ID=mRNA_F-distichus_contig103744.333.1|Name=mRNA_F-distichus_contig103744.333.1|organism=Fucus distichus monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at F-distichus_contig103744:1263..1901+ (Fucus distichus monoicous)
ATGGAGGAGGGAGACGGGGAAAGTTCAGCTAGACCACGGACCAATCGGCT
GCGACGGCGACGGCGGTACTTGGACTTGGAAGTTTTCTGCGATGACGAGA
ACGGGGAAGAGCTCCGGCTGCCTCCCGTTCGTCTCGACCTGCGTAGCGAT
TCGCGCGGTACTGGAACAGAGGCCGAGGGGCGGGGGATCACTGGCTCTTC
AAGAGGGAACGGAGATGACCGCGAAGGTTTCATGAGGTCTGGGCAGGCGG
CTCTGAAGAGGGTCACGCGACGCGCGTGGTCGGCGTTGCTGGCGAATCTG
GATTTGGGGCAGGATGACGATGATTATCATGATCACGAGCGGGAGGACGA
TAGCGCCATCGCTAGAACGGTTGGGGAGAGGACGACGGGCGGCAGTGGCG
AGAGATGAATGGAGGAGGGAGACGGGGAAAGTTCAGCTAGACCACGGACC
AATCGGCTGCGACGGCGACGGCGGTACTTGGACTTGGAAGTTTTCTGCGA
TGACGAGAACGGGGAAGAGCTCCGGCTGCCTCCCGTTCGTCTCGACCTGC
GTAGCGATTCGCGCGGTACTGGAACAGAGGCCGAGGGGCGGGGGATCACT
GGCTCTTCAAGAGGGAACGGAGATGACCGCGAAGGTTTCATGAGGTCTGG
GCAGGCGGCTCTGAAGAGGGTCACGCGACGCGCGTGGTCGGCGTTGCTGG
CGAATCTGGATTTGGGGCAGGATGACGATGATTATCATGATCACGAGCGG
GAGGACGATAGCGCCATCGCTAGAACGGTTGGGGAGAGGACGACGGGCGG
CAGTGGCGAGAGATGA
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