mRNA_F-distichus_contig103721.331.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103721.331.1
Unique NamemRNA_F-distichus_contig103721.331.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.280e-23
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    4 GITYG-GQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            GIT+G G   GL ME + D D+ +    RR VSG  +M  RG ISW SR Q+     T EAEYV+L++V+K VLF+RQV   M P   +  + VFEDN+GAI+LA N
Sbjct:  126 GITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 232
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BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.730e-21
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   31 GLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            G  ++ Y D DF +    RR VSG ++    GA+SW SR Q+     T EAEYVAL EVVK +LF+RQ+   M P + +  + VFEDN+GAI+LA N
Sbjct:   59 GFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 155
[Close]
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5JA71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA71_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.510e-21
Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 GITYG-GQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            GIT+  G   GL ME + D D+ +    RR VSG ++M   G I W SR Q+     T EAEYV+L++V+K VLF+RQV   M P   +  + VFEDNEGAI+LA N
Sbjct:  126 GITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCIPWFSRTQKCVTLSTTEAEYVSLADVMKDVLFLRQVWRCMLPEAGMPCIPVFEDNEGAIQLAQN 232
[Close]
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.040e-21
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   31 GLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            G  ++ Y D DF +    RR VSG ++    GA+SW SR Q+     T EAEYVAL +VVK +LF+RQ+   M P + +  + VFEDN+GAI++A N
Sbjct:   24 GFSLQVYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQN 120
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BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5KBD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.530e-21
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 WGITYGGQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            W +  GG   GL ME + D D+ +    RR VSG ++M   G ISW SR Q+     T EAEY +L++V+K VLF+RQV   M P   +  + VFEDN+GAI+LA N
Sbjct:  172 WVLHSGGVVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVKLSTTEAEYFSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 278
[Close]
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.770e-20
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    4 GITYG-GQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            GIT+  G   GL ME + D D+ +    RR VSG ++M   G ISW SR Q+     T EAEYV+L++V+K VLF+RQV   M P   +  + VFEDN+GAI+LA N
Sbjct:  170 GITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 276
[Close]
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5JMR9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.050e-20
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:   13 YGGQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            YG  G G  ++ Y D DF +    RR VSG ++    GA+SW SR Q+     T EAEYVAL +VVK +LF+RQ+   M P + +  + VFEDN+GAI+LA N
Sbjct: 1027 YGVVGEGFSLQRYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 1129
[Close]
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5KL35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL35_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.070e-20
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:   31 GLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            G     + D DF +    RR VSG ++    GA+SW SR Q      T EAEYVAL +VVK +LF+RQ+   M P + +  + VFEDN+GAI+LA N
Sbjct:   28 GFSFPGFADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQRCVTISTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 124
[Close]
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.320e-20
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    4 GITYG-GQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            GIT+  G   GL ME + D D+ +    RR VSG ++M   G ISW SR Q+     T EAEYV+L++V+K VLF+RQV   M P   +  + VFEDN+GAI+LA N
Sbjct:  212 GITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 318
[Close]
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.350e-20
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    4 GITYG-GQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRVQEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEGAIKLATN 321
            GIT+  G   GL ME + D D+ +    RR VSG ++M   G ISW SR Q+     T EAEYV+L++V+K VLF+RQV   M P   +  + VFEDN+GAI+LA N
Sbjct:  271 GITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 377
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103721.331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE7.280e-2349.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE3.730e-2147.42Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA71_9PHAE5.510e-2147.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI51_9PHAE8.040e-2145.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBD2_9PHAE8.530e-2145.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR24_9PHAE1.770e-2047.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMR9_9PHAE2.050e-2046.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL35_9PHAE3.070e-2045.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z9_9PHAE3.320e-2047.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE3.350e-2047.66Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103721contigF-distichus_contig103721:1511..1831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.9454882-CDS-F-distichus_contig103721:1510..18311622928956.9454882-CDS-F-distichus_contig103721:1510..1831Fucus distichus monoicousCDSF-distichus_contig103721 1511..1831 -
1690885081.5701296-CDS-F-distichus_contig103721:1510..18311690885081.5701296-CDS-F-distichus_contig103721:1510..1831Fucus distichus monoicousCDSF-distichus_contig103721 1511..1831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103721.331.1prot_F-distichus_contig103721.331.1Fucus distichus monoicouspolypeptideF-distichus_contig103721 1511..1831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103721.331.1

>prot_F-distichus_contig103721.331.1 ID=prot_F-distichus_contig103721.331.1|Name=mRNA_F-distichus_contig103721.331.1|organism=Fucus distichus monoicous|type=polypeptide|length=107bp
WGITYGGQGCGLCMEAYTDVDFGACLDTRRLVSGAVLMLARGAISWNSRV
QEVTGSGTPEAEYVALSEVVKGVLFMRQVQELMEPSMRVGAVNVFEDNEG
AIKLATN
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mRNA from alignment at F-distichus_contig103721:1511..1831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103721.331.1 ID=mRNA_F-distichus_contig103721.331.1|Name=mRNA_F-distichus_contig103721.331.1|organism=Fucus distichus monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at F-distichus_contig103721:1511..1831- (Fucus distichus monoicous)
TGGGGGATTACGTACGGTGGACAGGGCTGTGGACTTTGCATGGAAGCATA
TACGGATGTGGATTTCGGAGCCTGCCTGGACACAAGACGGTTGGTTTCAG
GTGCAGTGTTGATGTTGGCGAGGGGAGCGATCAGTTGGAACTCGAGGGTG
CAAGAAGTAACAGGATCAGGTACCCCGGAGGCAGAGTACGTTGCCTTATC
AGAGGTAGTCAAGGGTGTACTATTTATGAGACAGGTGCAGGAGTTAATGG
AACCATCGATGAGGGTCGGTGCAGTAAATGTGTTCGAAGATAATGAAGGG
GCCATCAAGCTGGCCACAAAC
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Coding sequence (CDS) from alignment at F-distichus_contig103721:1511..1831-

>mRNA_F-distichus_contig103721.331.1 ID=mRNA_F-distichus_contig103721.331.1|Name=mRNA_F-distichus_contig103721.331.1|organism=Fucus distichus monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at F-distichus_contig103721:1511..1831- (Fucus distichus monoicous)
TGGGGGATTACGTACGGTGGACAGGGCTGTGGACTTTGCATGGAAGCATA
TACGGATGTGGATTTCGGAGCCTGCCTGGACACAAGACGGTTGGTTTCAG
GTGCAGTGTTGATGTTGGCGAGGGGAGCGATCAGTTGGAACTCGAGGGTG
CAAGAAGTAACAGGATCAGGTACCCCGGAGGCAGAGTACGTTGCCTTATC
AGAGGTAGTCAAGGGTGTACTATTTATGAGACAGGTGCAGGAGTTAATGG
AACCATCGATGAGGGTCGGTGCAGTAAATGTGTTCGAAGATAATGAAGGG
GCCATCAAGCTGGCCACAAACTGGGGGATTACGTACGGTGGACAGGGCTG
TGGACTTTGCATGGAAGCATATACGGATGTGGATTTCGGAGCCTGCCTGG
ACACAAGACGGTTGGTTTCAGGTGCAGTGTTGATGTTGGCGAGGGGAGCG
ATCAGTTGGAACTCGAGGGTGCAAGAAGTAACAGGATCAGGTACCCCGGA
GGCAGAGTACGTTGCCTTATCAGAGGTAGTCAAGGGTGTACTATTTATGA
GACAGGTGCAGGAGTTAATGGAACCATCGATGAGGGTCGGTGCAGTAAAT
GTGTTCGAAGATAATGAAGGGGCCATCAAGCTGGCCACAAAC
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