mRNA_F-distichus_contig103697.328.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103697.328.1
Unique NamemRNA_F-distichus_contig103697.328.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103697.328.1 vs. uniprot
Match: D8LDF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.250e-13
Identity = 46/71 (64.79%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 QIDGLRMAVFEASTRAEQTAEQC----------------KKSAVSAAVREIARDREAFAEGRREALKRIGE 165
            Q+  LRMAVFEASTRAEQTAEQ                 K+ AV AAVREIA+DREAFAEGRREA+KRIGE
Sbjct:   99 QVAALRMAVFEASTRAEQTAEQLIKDSASFVHRGVLLQYKRDAVEAAVREIAQDREAFAEGRREAVKRIGE 169
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103697.328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF6_ECTSI4.250e-1364.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103697contigF-distichus_contig103697:386..934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size147
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103697.328.1prot_F-distichus_contig103697.328.1Fucus distichus monoicouspolypeptideF-distichus_contig103697 386..916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.6500216-CDS-F-distichus_contig103697:385..4841622928956.6500216-CDS-F-distichus_contig103697:385..484Fucus distichus monoicousCDSF-distichus_contig103697 386..484 -
1690885081.4372375-CDS-F-distichus_contig103697:385..4841690885081.4372375-CDS-F-distichus_contig103697:385..484Fucus distichus monoicousCDSF-distichus_contig103697 386..484 -
1622928956.6650913-CDS-F-distichus_contig103697:868..9161622928956.6650913-CDS-F-distichus_contig103697:868..916Fucus distichus monoicousCDSF-distichus_contig103697 869..916 -
1690885081.4496994-CDS-F-distichus_contig103697:868..9161690885081.4496994-CDS-F-distichus_contig103697:868..916Fucus distichus monoicousCDSF-distichus_contig103697 869..916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.6794212-UTR-F-distichus_contig103697:916..9341622928956.6794212-UTR-F-distichus_contig103697:916..934Fucus distichus monoicousUTRF-distichus_contig103697 917..934 -
1690885081.4594126-UTR-F-distichus_contig103697:916..9341690885081.4594126-UTR-F-distichus_contig103697:916..934Fucus distichus monoicousUTRF-distichus_contig103697 917..934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103697.328.1

>prot_F-distichus_contig103697.328.1 ID=prot_F-distichus_contig103697.328.1|Name=mRNA_F-distichus_contig103697.328.1|organism=Fucus distichus monoicous|type=polypeptide|length=49bp
MAVFEASTRAEQTAEQCKKSAVSAAVREIARDREAFAEGRREALKRIGE
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mRNA from alignment at F-distichus_contig103697:386..934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103697.328.1 ID=mRNA_F-distichus_contig103697.328.1|Name=mRNA_F-distichus_contig103697.328.1|organism=Fucus distichus monoicous|type=mRNA|length=549bp|location=Sequence derived from alignment at F-distichus_contig103697:386..934- (Fucus distichus monoicous)
CAGATTGACGGTCTTCGGATGGCGGTGTTCGAAGCAAGCACGCGTGCCGA
ACAGACCGCTGAGCAGGTACGAAAGCTCTTTTTGCTTGTTTTTTTTTCTT
GTTCTTGGCAATGTTTCCAATCCCGCACGTTGTCTGCTGCTCAGAGTGTA
CACAAAGAACTGAATATACTGAAAAATGAATATACTTTCAAAAGCCTCTG
TTGAAGGAGGACGCGAAAGTCGTCTGGATAGCTTGCTGCCGCGTCCACAT
GCAACACCTGCGAGAGTCGATACCCTCCCCCCCACCCAAAAATATATATT
TTTTAAAAACACGAGAAAAAAAACGCGCCCAGAGATGAATCCATGCTCGT
GTTGAACTGTCCCCCCTGTTTGTGCTGGTGCGTTACACACTGTCGCGGTC
ATGGTTACTTTGCCTCTTACCGTCGCCGTGACCATGACCGAGGCAATCAG
TGTAAGAAGAGCGCAGTAAGCGCTGCCGTGCGCGAGATCGCTCGAGATCG
AGAGGCCTTCGCCGAGGGCAGACGAGAGGCCTTGAAGCGAATCGGTGAG
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Coding sequence (CDS) from alignment at F-distichus_contig103697:386..934-

>mRNA_F-distichus_contig103697.328.1 ID=mRNA_F-distichus_contig103697.328.1|Name=mRNA_F-distichus_contig103697.328.1|organism=Fucus distichus monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at F-distichus_contig103697:386..934- (Fucus distichus monoicous)
ATGGCGGTGTTCGAAGCAAGCACGCGTGCCGAACAGACCGCTGAGCAGAT
GGCGGTGTTCGAAGCAAGCACGCGTGCCGAACAGACCGCTGAGCAGTGTA
AGAAGAGCGCAGTAAGCGCTGCCGTGCGCGAGATCGCTCGAGATCGAGAG
GCCTTCGCCGAGGGCAGACGAGAGGCCTTGAAGCGAATCGGTGAGTGTAA
GAAGAGCGCAGTAAGCGCTGCCGTGCGCGAGATCGCTCGAGATCGAGAGG
CCTTCGCCGAGGGCAGACGAGAGGCCTTGAAGCGAATCGGTGAG
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