mRNA_F-distichus_contig10369.327.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-distichus_contig10369.327.1
Unique Name	mRNA_F-distichus_contig10369.327.1
Type	mRNA
Organism	Fucus distichus monoicous (Fucus distichus monoicous)

Homology

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BLAST of mRNA_F-distichus_contig10369.327.1 vs. uniprot
Match: D7G410_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G410_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.150e-12
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 3

Query:  309 LVRQKQEEKRAEFRQRWHHNRRGLRQALRKRPNLLERQDQLAQLHCKQRAAEAQTARAFLKSREGFEAARRRAAAG 536
            +V   +EEK+AEFR+RW  NR GLRQALRKRPNLLERQ++ AQ H K+ A +A +AR FL+S EGF AA RRA  G
Sbjct:  481 IVEDLEEEKQAEFRERWRLNRSGLRQALRKRPNLLERQEKFAQQHSKRLADQAASARDFLESTEGFAAAGRRALPG 556

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BLAST of mRNA_F-distichus_contig10369.327.1 vs. uniprot
Match: A0A6H5KZD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.790e-11
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 3

Query:  306 ELVRQKQEEKRAEFRQRWHHNRRGLRQALRKRPNLLERQDQLAQLHCKQRAAEAQTARAFLKSREGFEAARRRAAAG 536
            ++V+  +EEK+AEFR+RW  NR GLR ALRKRPNLLERQ++ AQ H K+ A +A +AR FL+S EGF A  RR   G
Sbjct:  559 QIVKDLEEEKQAEFRERWRLNRSGLRLALRKRPNLLERQEKFAQQHSKRLADQAASAREFLESTEGFAAVGRRTLPG 635

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig10369.327.1 vs. uniprot

BLAST of mRNA_F-distichus_contig10369.327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G410_ECTSI	3.150e-12	63.16	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KZD1_9PHAE	8.790e-11	58.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig10369	contig	F-distichus_contig10369:8398..10819 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	827
Cds size	534
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig10369.327.1	prot_F-distichus_contig10369.327.1	Fucus distichus monoicous	polypeptide	F-distichus_contig10369 8398..9966 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928956.5597053-CDS-F-distichus_contig10369:8397..8754	1622928956.5597053-CDS-F-distichus_contig10369:8397..8754	Fucus distichus monoicous	CDS	F-distichus_contig10369 8398..8754 -
1690885081.380091-CDS-F-distichus_contig10369:8397..8754	1690885081.380091-CDS-F-distichus_contig10369:8397..8754	Fucus distichus monoicous	CDS	F-distichus_contig10369 8398..8754 -
1622928956.5727713-CDS-F-distichus_contig10369:9123..9267	1622928956.5727713-CDS-F-distichus_contig10369:9123..9267	Fucus distichus monoicous	CDS	F-distichus_contig10369 9124..9267 -
1690885081.3965077-CDS-F-distichus_contig10369:9123..9267	1690885081.3965077-CDS-F-distichus_contig10369:9123..9267	Fucus distichus monoicous	CDS	F-distichus_contig10369 9124..9267 -
1622928956.5848532-CDS-F-distichus_contig10369:9933..9966	1622928956.5848532-CDS-F-distichus_contig10369:9933..9966	Fucus distichus monoicous	CDS	F-distichus_contig10369 9934..9966 -
1690885081.4068344-CDS-F-distichus_contig10369:9933..9966	1690885081.4068344-CDS-F-distichus_contig10369:9933..9966	Fucus distichus monoicous	CDS	F-distichus_contig10369 9934..9966 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928956.5981426-UTR-F-distichus_contig10369:9966..10088	1622928956.5981426-UTR-F-distichus_contig10369:9966..10088	Fucus distichus monoicous	UTR	F-distichus_contig10369 9967..10088 -
1690885081.417094-UTR-F-distichus_contig10369:9966..10088	1690885081.417094-UTR-F-distichus_contig10369:9966..10088	Fucus distichus monoicous	UTR	F-distichus_contig10369 9967..10088 -
1622928956.613981-UTR-F-distichus_contig10369:10648..10819	1622928956.613981-UTR-F-distichus_contig10369:10648..10819	Fucus distichus monoicous	UTR	F-distichus_contig10369 10649..10819 -
1690885081.4269142-UTR-F-distichus_contig10369:10648..10819	1690885081.4269142-UTR-F-distichus_contig10369:10648..10819	Fucus distichus monoicous	UTR	F-distichus_contig10369 10649..10819 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-distichus_contig10369:8398..10819-
coding sequence from alignment at F-distichus_contig10369:8398..10819-

protein sequence of mRNA_F-distichus_contig10369.327.1

>prot_F-distichus_contig10369.327.1 ID=prot_F-distichus_contig10369.327.1|Name=mRNA_F-distichus_contig10369.327.1|organism=Fucus distichus monoicous|type=polypeptide|length=178bp
MPLDELVRQKQEEKRAEFRQRWHHNRRGLRQALRKRPNLLERQDQLAQLH
CKQRAAEAQTARAFLKSREGFEAARRRAAAGSPSHSKGLARETATPTEQK
SFGGEEQGERDSADGSSTRATRQDDGGGEFAASTQDGEIDDIIVASAPHG
GVVYEDKRLSSESTPLKSEEGGDGNGDS

mRNA from alignment at F-distichus_contig10369:8398..10819-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-distichus_contig10369.327.1 ID=mRNA_F-distichus_contig10369.327.1|Name=mRNA_F-distichus_contig10369.327.1|organism=Fucus distichus monoicous|type=mRNA|length=2422bp|location=Sequence derived from alignment at F-distichus_contig10369:8398..10819- (Fucus distichus monoicous)
CAGGCTGCCCAAGAAAAAGAAGCGAAAGAGAGATCAGAGCACCAAAGACG
CAGCTTCCTCAGACAGCTGGCAAGATACAGAGAGAGCACGGTGTCACACA
CGCCAAGGGAAACAGTCTCTTCTAGAAAGAAAGCCGAAGAAACTCGACGA
AGGGCCCAGCAGAGTCACCACGTGCGTATTTCGTCCACGTCCTTTCGGCC
ACTTCGTTCGATCTATGTTCTGCTGAATACAGTAATAATAATGCGTATTA
TATTTTTCTATTTGTTCTGGGTCGTACAGTAGGACCTAACTGGAAGAAAC
GGCGCGAGTTTCCTCTATTCCTGTATTCCTCTATTGGTGTCTGCCCCCCG
CCGGGAGGAGAATCGAGAAATATTTGATAACCCATTACAAGGAGGGCTAC
TTCTGCAAATAAGCCAGTCTGATTTGATTTTAATCGGCAATAAAACACCC
AGTATCCGGTGGACGATCCTGAAGAATGACACACGGAATAACTCTATGTT
TCTAGAGTCAAGAGAATGTAAAAAGGGCTGAAAAGTGCGATTTTATTAAC
AGCTATGATGAAAAAAATGATGTCTCATGAATTTTATTAACAGCTAAGGG
TTTCTCGGCGGGGACGGACGAGGTTTTAATTTGATATTTTCTCAACGAAT
TTATTTGCCCCCCGACGGGCGTCATGCCTTCGTTCTCAAATACGGCGTCG
ATCCCTCGAACCCTTGCGGCTAATGTTGAAGGATCAAGAGAAACAACAAA
TAGAGGCTGAGGAAAAAGCAGCTCGTCAGAGAGAGTGTCGCGTGCTGTCA
GGATTTACGTGGAGCGATCCGAGGCCAGGAGGCGAGAGAAGCACGGGACG
GGGATGCCATTGGATGAGCTCGTGAGGCAAAAGCAGGTGTAACTCGATGT
TAGGCCAGCGCGGTCTGTGCTTGATGGTGATGGCGCCTTCTTCCCGCGGT
GGTGTACTTCGTTATAGCATAGTCCATTGCATTCCCATGCTTGTGTGGTG
TGTCGCTGTGACGCTGAACACTCGTGACAAACCTATGTTCGTCGAGGTTG
TTCGTTTCGACTCGTTCAACGAATGCATGGGGGGGTTGGGGGATGCCCTA
TATTTATTCCCAAGTTAAGGGGGAAACAGCACGAAGATATCCCCTCCAAG
GAATATATTTTACCAACCCCCTGGTGAAATAAGTGGAATTCTGGGCAAGA
TTACCTATCATTTAGGGGATCATGCAGTGCCATCCCCGGTAGGGGCTGTT
CTGGTGACATCCCCGGGGACGGGATCGTCTAATCTCCACCCGCCATTCGT
TGAACGGTTCTTCCCTCAGATATCACATTGCAGTCAGATGAGCCTATTGG
AGGTAGCCGTTCGTGGTAGGGGTGGGAATCCTAGTGTAAGGATTAGTCTA
GAACTAGAACGAGGATGTGGTCAACGCCAGCAAGTCTCACGTAGCTCATC
GCAAATTTTGAAACGGCGCACTAGAGGTGTTTTGCGGTGGAGATTATGGT
CCAACATCTCGGCTTGTTAGCTGTGATCCATGCTCATGTCCTGTGGTTGT
AGGAAGAAAAGAGGGCAGAGTTTCGACAGCGATGGCATCACAACCGCCGG
GGACTTCGCCAAGCCTTGCGCAAACGGCCTAACCTGCTCGAGAGACAAGA
TCAACTTGCCCAGCTTCACTGCAAGCAACGGGCAGCTGAAGCGCAGGTCG
GTGGTACCTGAATGTGTGAAGATAAATTTCTCGTGCGTAAAGCTTATCCA
TTATCTTCCCTACTATACCAGGTTAAACCCCTGTAGCATCGCTAACGAAG
AAAGCGAGACTCCACGGCAATCGACACCATCCATCGTGCCGAACAGTAAC
ATTATAGTTGCAATTATTATAGTTACAGTTACAACTAAATTTAAAGTTAC
AGTTATAGTTACAGGTCTGACTGCACGGTTCATATAGACTAAGCTAAGCT
AACAACGGTGCAATACCATGCAGTAAAATGCTGAACTATAGGATACAAAC
TCATGTTGGAACCCTGACGTCAGTAATTTGTTTCGAAACGTGGCGTTGTT
CCGTGCTCTCATCAGACCGCCAGGGCGTTCCTCAAAAGTAGGGAAGGCTT
CGAAGCCGCACGGAGGCGCGCAGCCGCGGGCAGCCCCAGCCATTCTAAAG
GCCTAGCCCGTGAGACCGCCACCCCAACAGAACAAAAGTCGTTTGGGGGA
GAAGAGCAGGGGGAAAGGGACAGCGCAGACGGTAGCTCTACCCGCGCGAC
AAGACAGGATGATGGTGGAGGCGAGTTTGCAGCTTCGACCCAAGACGGAG
AGATCGATGACATCATTGTTGCGTCCGCACCCCATGGTGGCGTTGTCTAC
GAGGACAAACGGTTGTCGTCTGAATCAACGCCTCTCAAGAGTGAAGAGGG
GGGAGATGGTAATGGGGACAGC

Coding sequence (CDS) from alignment at F-distichus_contig10369:8398..10819-

>mRNA_F-distichus_contig10369.327.1 ID=mRNA_F-distichus_contig10369.327.1|Name=mRNA_F-distichus_contig10369.327.1|organism=Fucus distichus monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at F-distichus_contig10369:8398..10819- (Fucus distichus monoicous)
ATGCCATTGGATGAGCTCGTGAGGCAAAAGCAGATGCCATTGGATGAGCT
CGTGAGGCAAAAGCAGGAAGAAAAGAGGGCAGAGTTTCGACAGCGATGGC
ATCACAACCGCCGGGGACTTCGCCAAGCCTTGCGCAAACGGCCTAACCTG
CTCGAGAGACAAGATCAACTTGCCCAGCTTCACTGCAAGCAACGGGCAGC
TGAAGCGCAGGAAGAAAAGAGGGCAGAGTTTCGACAGCGATGGCATCACA
ACCGCCGGGGACTTCGCCAAGCCTTGCGCAAACGGCCTAACCTGCTCGAG
AGACAAGATCAACTTGCCCAGCTTCACTGCAAGCAACGGGCAGCTGAAGC
GCAGACCGCCAGGGCGTTCCTCAAAAGTAGGGAAGGCTTCGAAGCCGCAC
GGAGGCGCGCAGCCGCGGGCAGCCCCAGCCATTCTAAAGGCCTAGCCCGT
GAGACCGCCACCCCAACAGAACAAAAGTCGTTTGGGGGAGAAGAGCAGGG
GGAAAGGGACAGCGCAGACGGTAGCTCTACCCGCGCGACAAGACAGGATG
ATGGTGGAGGCGAGTTTGCAGCTTCGACCCAAGACGGAGAGATCGATGAC
ATCATTGTTGCGTCCGCACCCCATGGTGGCGTTGTCTACGAGGACAAACG
GTTGTCGTCTGAATCAACGCCTCTCAAGAGTGAAGAGGGGGGAGATGGTA
ATGGGGACAGCACCGCCAGGGCGTTCCTCAAAAGTAGGGAAGGCTTCGAA
GCCGCACGGAGGCGCGCAGCCGCGGGCAGCCCCAGCCATTCTAAAGGCCT
AGCCCGTGAGACCGCCACCCCAACAGAACAAAAGTCGTTTGGGGGAGAAG
AGCAGGGGGAAAGGGACAGCGCAGACGGTAGCTCTACCCGCGCGACAAGA
CAGGATGATGGTGGAGGCGAGTTTGCAGCTTCGACCCAAGACGGAGAGAT
CGATGACATCATTGTTGCGTCCGCACCCCATGGTGGCGTTGTCTACGAGG
ACAAACGGTTGTCGTCTGAATCAACGCCTCTCAAGAGTGAAGAGGGGGGA
GATGGTAATGGGGACAGC