mRNA_F-distichus_contig103404.304.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: D8LPY6_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY6_ECTSI) HSP 1 Score: 238 bits (606), Expect = 8.480e-73 Identity = 126/207 (60.87%), Postives = 158/207 (76.33%), Query Frame = 1
Query: 1 EDSVSLLVRDFRERVEELREQVGT----TDAGGNVELKDVAQKFRNVLQGDPAAVEELRARVLERLEDVREEIEELLEIKELSKASDRLEKATTESAELVFDSAVTAMTKGLDALINDGKEVVPVGQATETLQVSTYTFGETNEFWDDLEANGVTPRRLFLYNLLGAGVVLGGNLFGVTSGLLG-FAPESSRGARLDVIFPVRGFKR 606
ED++++L +D RE VE+L +QVG D G VELKDVAQKF+ VL+GDPA V+ELR +VL+ LE+VREEIEELLE+KELSKA +LEKAT ES E+V DSA A+ KG+D ++N+GK+ +P G+ TE QVSTY FG+ NE WDD+ ANGVT R Y+LLG V LGGNLFGVTS LLG APE+SR R+D++FP+ GFKR
Sbjct: 115 EDTLAVLAKDVRELVEDLMDQVGVGSGADDKAGLVELKDVAQKFKGVLRGDPAVVQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEGKDAIPEGEETEKFQVSTYFFGKENELWDDMRANGVTRERFVRYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKR 321
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A6H5KJV3_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV3_9PHAE) HSP 1 Score: 234 bits (597), Expect = 1.320e-70 Identity = 123/207 (59.42%), Postives = 160/207 (77.29%), Query Frame = 1
Query: 1 EDSVSLLVRDFRERVEELREQVGT----TDAGGNVELKDVAQKFRNVLQGDPAAVEELRARVLERLEDVREEIEELLEIKELSKASDRLEKATTESAELVFDSAVTAMTKGLDALINDGKEVVPVGQATETLQVSTYTFGETNEFWDDLEANGVTPRRLFLYNLLGAGVVLGGNLFGVTSGLLG-FAPESSRGARLDVIFPVRGFKR 606
+D++++L ++ RE VE+L +QVG + G VELKDVAQKF+ VL+GDPAAV+ELR +VL+ LE+VREEIEELLE+KELSKA +LEKAT ES E+V DSA A+ KG+D ++N+G++ +P G+ TE QVSTY FG+ NE W+D+ ANGVT R LY+LLG V LGGNLFGVTS LLG APE+SR R+D++FP+ GFKR
Sbjct: 211 DDTLAVLAKEVRELVEDLMDQVGVGSGADEKAGLVELKDVAQKFKGVLRGDPAAVQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEGRDAIPEGEETEKFQVSTYFFGKENELWNDMRANGVTRERFVLYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKR 417
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A835YU89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU89_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.830e-24 Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1
Query: 220 EIKELSKAS-DRLEKATTESAELVFDSAVTAMTKGLD-ALINDGKEVVPVGQATETLQVSTYTFGETNEFWDDLEANGVTPRRLFLYNLLGAGVVLGGNLFGVTSGLLGFAPESSRGARLDVIFPVRGFKR 606
E++E+SKA+ + + KA + E D AV GLD A N GK + E+ V+TY FG+ NEFW+D++ NGV PRR FLY L A V +GGNLFGVTS LLG AP+ + ++LDV++PV+GFKR
Sbjct: 24 EMREMSKAAIEAVTKAGVNAEEAARDIAVKIGEAGLDVATGNLGKNQPSLDD--ESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGAAPKLAERSQLDVLYPVKGFKR 152
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A0G4GW09_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW09_VITBC) HSP 1 Score: 67.0 bits (162), Expect = 1.130e-9 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 430 DLEANGVTPRRLFLYNLLGAGVV-LGGNLFGVTSGLLGFAPESSRGARLDVIFPVRGFKR 606
++E + +TPRR FL LLGA VV LG NLFG+TS LL +PE +R RLDVI+P+ GFKR
Sbjct: 84 EIEPDSITPRRRFLV-LLGAAVVALGANLFGITSALLRLSPEQARKLRLDVIYPIDGFKR 142
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A1Y1I0H8_KLENI (PsbP family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0H8_KLENI) HSP 1 Score: 64.7 bits (156), Expect = 4.050e-9 Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 457 RRLFLYNLLGAGVVLGGNLFGVTSGLLGFAPESSRGARLDVIFPVRGFKR 606
RRLF + G V LGGNL GVTSGLLG PE+SR +LD +FPV+GFKR
Sbjct: 10 RRLFYSGVTGLAVTLGGNLGGVTSGLLGLNPEASRQLKLDTLFPVKGFKR 59
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A7S0BH31_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BH31_9RHOD) HSP 1 Score: 60.8 bits (146), Expect = 1.650e-8 Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 394 TYTFGETNEFWDDLEANGVTPRRLFLYNLLGAGVVLGGNLFGVTSGLLGFAPESSRGARLDVIFPVRGFKR 606
TY FG+ EF DL G RR F + +VLGGNL G TS +L +SR +LDV++PV GFKR
Sbjct: 53 TYLFGKEGEFDRDLGVLGSDRRRFFTGLGISTALVLGGNLLGSTSAVLSMNANTSRALKLDVVYPVGGFKR 123
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A7S0BHH0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHH0_9RHOD) HSP 1 Score: 60.1 bits (144), Expect = 1.030e-7 Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 394 TYTFGETNEFWDDLEANGVTPRRLFLYNLLGAGVVLGGNLFGVTSGLLGFAPESSRGARLDVIFPVRGFKR 606
TY FG+ EF DL G RR F + +VLGGNL G TS +L +SR +LDV++PV GFKR
Sbjct: 119 TYLFGKEGEFDRDLGVLGSDRRRFFNGLGISTALVLGGNLLGSTSAVLSMNANTSRALKLDVVYPVGGFKR 189
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A7S3ENR3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENR3_9RHOD) HSP 1 Score: 61.2 bits (147), Expect = 1.350e-7 Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 376 ETLQVSTYTFGETNEFWDDLEANGVTPRRLFLYNLLGAGVVLGGNLFGVTSGLLGFAPESSRGARLDVIFPVRGFKR 606
E + T+ FG+ EF DL G RR F L +VLGGNL G TS +L +SR +LDV++PV GFKR
Sbjct: 123 EKTDLRTFLFGKEGEFDRDLGVLGSDRRRFFTGLGLSTALVLGGNLLGSTSAVLSMNANTSRALKLDVVYPVGGFKR 199
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: C1E570_MICCC (PsbP domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E570_MICCC) HSP 1 Score: 56.6 bits (135), Expect = 3.250e-6 Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 451 TPRRLFLYNLLGAGVVLGGNLFGVTSGLLGFAPESSRGARLDVIFPVRGFKR 606
+PRR+FL L AG+ LGGN G+T LL P+ + RLD+I+PV GFKR
Sbjct: 12 SPRRVFLGTLATAGLALGGNFLGITGKLLNGVPDVAESLRLDLIYPVGGFKR 63
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Match: A0A4D9CU31_9STRA (PsbP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU31_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.650e-6 Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 1
Query: 397 YTFGETNEFWDDLEANGVTPRRLFLYNLLGAGVVLGGNLFGVTSGLLGF--APESSRGARLDVIFPVRGFKR 606
Y FG EF +DL G++ +RL L + + LG N GVTS LL PE+ +LDV++PVRGFKR
Sbjct: 3 YFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDLKLDVLYPVRGFKR 74 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103404.304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig103404.304.1 >prot_F-distichus_contig103404.304.1 ID=prot_F-distichus_contig103404.304.1|Name=mRNA_F-distichus_contig103404.304.1|organism=Fucus distichus monoicous|type=polypeptide|length=203bp EDSVSLLVRDFRERVEELREQVGTTDAGGNVELKDVAQKFRNVLQGDPAAback to top mRNA from alignment at F-distichus_contig103404:23..1837- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig103404.304.1 ID=mRNA_F-distichus_contig103404.304.1|Name=mRNA_F-distichus_contig103404.304.1|organism=Fucus distichus monoicous|type=mRNA|length=1815bp|location=Sequence derived from alignment at F-distichus_contig103404:23..1837- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig103404:23..1837- >mRNA_F-distichus_contig103404.304.1 ID=mRNA_F-distichus_contig103404.304.1|Name=mRNA_F-distichus_contig103404.304.1|organism=Fucus distichus monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at F-distichus_contig103404:23..1837- (Fucus distichus monoicous)back to top |