mRNA_F-distichus_contig103402.303.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103402.303.1
Unique NamemRNA_F-distichus_contig103402.303.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.680e-34
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:   55 LHRPYVIVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 294
            +H    I+ P++P   TT   EFMKAIKWTKKIMYEEGHALPQLIHMWH+IVRHPALFYSCRSHFVGQMVNSLSRLGLPP
Sbjct: 1361 VHAALDILVPALPFRLTTG--EFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 1438
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.690e-34
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:   55 LHRPYVIVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 294
            +H    I+ P++P   TT   EFMKAIKWTKKIMYEEGHALPQLIHMWH+IVRHPALFYSCRSHFVGQMVNSLSRLGLPP
Sbjct: 2392 VHAALDILVPALPFRLTTG--EFMKAIKWTKKIMYEEGHALPQLIHMWHMIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 2469
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: A0A7S2HDV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDV8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.420e-28
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   73 IVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 294
            I+ P++P        +F+KAIKWTKKIMYEEGHALPQLIHMWH++VRHPALFY+ R+ F+ QMV SL+RLGLPP
Sbjct:   21 ILVPALP--SRLPPNDFIKAIKWTKKIMYEEGHALPQLIHMWHLLVRHPALFYAYRAQFIPQMVQSLNRLGLPP 92
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: A0A7S1U5K1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5K1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.830e-28
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:  118 EFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 294
            EF+K+IKWTKKIMYEEGHALPQLIHMW +I RHP+LFYS RS FV QMVNSL+RLGLPP
Sbjct:    2 EFIKSIKWTKKIMYEEGHALPQLIHMWQLITRHPSLFYSYRSQFVPQMVNSLNRLGLPP 60
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN)

HSP 1 Score: 102 bits (255), Expect = 2.320e-23
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   73 IVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 294
            I+ P++P        +F+KAIKWTKKIMYEEGHAL QL+HMW ++VRHP LFY  RS F+ QMVNSL+RLGLPP
Sbjct: 2893 ILIPALP--KRLPMADFIKAIKWTKKIMYEEGHALAQLVHMWQLVVRHPTLFYPYRSQFMPQMVNSLNRLGLPP 2964
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: A0A8J2WWQ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWQ5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.050e-23
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   73 IVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 294
            I+ P++P        +F+KA+KWTKKIMYEEGHAL QL+HMW ++VRHP LF+  RS F+ QMVNSL+RLGLPP
Sbjct: 2174 ILIPALP--KRLPINDFVKAVKWTKKIMYEEGHALAQLVHMWQLVVRHPGLFFPYRSQFMPQMVNSLNRLGLPP 2245
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: A0A7R9U8N6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8N6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.490e-22
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   73 IVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPP 294
            I+ P++   D     +F K+++WT+KIMYE+GH LPQL+HMWH+I RHP LFYS R  FV QMVNSL+R+GLPP
Sbjct: 2172 ILVPAL--QDRLDADDFYKSLRWTRKIMYEDGHTLPQLVHMWHLITRHPTLFYSYRVQFVPQMVNSLNRVGLPP 2243
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: A0A484DQK7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQK7_BRELC)

HSP 1 Score: 100 bits (249), Expect = 1.500e-22
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 LDVPCFIIHSSMLTAVYPLHRPYVIVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPPRS 300
            L V   ++ +  + A + + + + I+ P++P      + EF+KAIKWTKKI YEEGHAL QL+H+W +I+RHPALFY  R  FV  MVNSL+RL +PP S
Sbjct: 2329 LQVYVALLRTHEMDARFLVRKAFDILLPALP--SRLPSNEFIKAIKWTKKIAYEEGHALGQLVHIWFLIIRHPALFYPFRGQFVPLMVNSLNRLAIPPSS 2426
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: M4B6S0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6S0_HYAAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.700e-22
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 LDVPCFIIHSSMLTAVYPLHRPYVIVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPPRS 300
            L V   ++ +  + A + + + + I+ P++P  +   + EF+KAIKWTKKI YEEGH L QL+H+W +IVRHPALFY  R  FV  MVNSL+RL +PP S
Sbjct:  563 LQVYVALLRTHEMDARFLVRKAFDILLPALP--NRLPSNEFIKAIKWTKKIAYEEGHVLGQLVHIWFLIVRHPALFYPFRGQFVPLMVNSLNRLAIPPSS 660
[Close]
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Match: A0A0W8DG61_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DG61_PHYNI)

HSP 1 Score: 99.4 bits (246), Expect = 3.660e-22
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 LDVPCFIIHSSMLTAVYPLHRPYVIVYPSMPVHDTTRTQEFMKAIKWTKKIMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPPRS 300
            L V   ++ +  + A + + + + I+ P++P      + EF+KAIKWTKKI YEEGH L QL+H+W +IVRHPALFY  R  FV  MVNSL+RL +PP S
Sbjct:  563 LQVYVALLRTHEMDARFLVRKAFDILLPALP--SRLPSNEFIKAIKWTKKIAYEEGHVLGQLVHIWFLIVRHPALFYPFRGQFVPLMVNSLNRLAIPPSS 660
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103402.303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAF7_9PHAE3.680e-3480.00FAT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFI6_ECTSI3.690e-3480.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2HDV8_9STRA3.420e-2867.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1U5K1_9STRA4.830e-2883.05Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YHH3_AURAN2.320e-2364.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2WWQ5_9STRA8.050e-2362.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9U8N6_9STRA1.490e-2259.46Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A484DQK7_BRELC1.500e-2249.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
M4B6S0_HYAAE2.700e-2249.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0W8DG61_PHYNI3.660e-2249.00Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103402contigF-distichus_contig103402:1584..1883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.9e-29
Seed eggNOG ortholog2880.D8LFI6
KEGG koko:K08874
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0889@2759
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.9038372-CDS-F-distichus_contig103402:1583..18831622928952.9038372-CDS-F-distichus_contig103402:1583..1883Fucus distichus monoicousCDSF-distichus_contig103402 1584..1883 -
1690885080.1398602-CDS-F-distichus_contig103402:1583..18831690885080.1398602-CDS-F-distichus_contig103402:1583..1883Fucus distichus monoicousCDSF-distichus_contig103402 1584..1883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103402.303.1prot_F-distichus_contig103402.303.1Fucus distichus monoicouspolypeptideF-distichus_contig103402 1584..1883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103402.303.1

>prot_F-distichus_contig103402.303.1 ID=prot_F-distichus_contig103402.303.1|Name=mRNA_F-distichus_contig103402.303.1|organism=Fucus distichus monoicous|type=polypeptide|length=100bp
LDVPCFIIHSSMLTAVYPLHRPYVIVYPSMPVHDTTRTQEFMKAIKWTKK
IMYEEGHALPQLIHMWHIIVRHPALFYSCRSHFVGQMVNSLSRLGLPPRS
back to top

mRNA from alignment at F-distichus_contig103402:1584..1883-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103402.303.1 ID=mRNA_F-distichus_contig103402.303.1|Name=mRNA_F-distichus_contig103402.303.1|organism=Fucus distichus monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at F-distichus_contig103402:1584..1883- (Fucus distichus monoicous)
CTTGATGTACCCTGTTTTATCATCCATTCGTCTATGCTCACTGCTGTATA
CCCTCTTCACCGTCCATATGTCATTGTATATCCCTCCATGCCCGTCCACG
ATACAACACGCACGCAGGAGTTCATGAAGGCCATCAAGTGGACGAAGAAA
ATCATGTACGAAGAGGGCCATGCCCTCCCCCAGCTTATCCACATGTGGCA
CATCATCGTCAGGCACCCCGCCCTCTTCTACAGCTGCCGGAGCCACTTCG
TCGGGCAGATGGTCAACTCTCTCAGCCGCTTGGGGCTGCCGCCTAGGTCT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig103402:1584..1883-

>mRNA_F-distichus_contig103402.303.1 ID=mRNA_F-distichus_contig103402.303.1|Name=mRNA_F-distichus_contig103402.303.1|organism=Fucus distichus monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at F-distichus_contig103402:1584..1883- (Fucus distichus monoicous)
CTTGATGTACCCTGTTTTATCATCCATTCGTCTATGCTCACTGCTGTATA
CCCTCTTCACCGTCCATATGTCATTGTATATCCCTCCATGCCCGTCCACG
ATACAACACGCACGCAGGAGTTCATGAAGGCCATCAAGTGGACGAAGAAA
ATCATGTACGAAGAGGGCCATGCCCTCCCCCAGCTTATCCACATGTGGCA
CATCATCGTCAGGCACCCCGCCCTCTTCTACAGCTGCCGGAGCCACTTCG
TCGGGCAGATGGTCAACTCTCTCAGCCGCTTGGGGCTGCCGCCTAGGTCT
CTTGATGTACCCTGTTTTATCATCCATTCGTCTATGCTCACTGCTGTATA
CCCTCTTCACCGTCCATATGTCATTGTATATCCCTCCATGCCCGTCCACG
ATACAACACGCACGCAGGAGTTCATGAAGGCCATCAAGTGGACGAAGAAA
ATCATGTACGAAGAGGGCCATGCCCTCCCCCAGCTTATCCACATGTGGCA
CATCATCGTCAGGCACCCCGCCCTCTTCTACAGCTGCCGGAGCCACTTCG
TCGGGCAGATGGTCAACTCTCTCAGCCGCTTGGGGCTGCCGCCTAGGTCT
back to top