mRNA_F-distichus_contig103386.299.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103386.299.1
Unique NamemRNA_F-distichus_contig103386.299.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: D7FHQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.080e-22
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    4 ASREVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            ASREVWSHDEEEVLWRAQKEYGNAW++I+SLLPGRSENAVKNHW
Sbjct:   61 ASREVWSHDEEEVLWRAQKEYGNAWSYISSLLPGRSENAVKNHW 104          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: A0A6H5L686_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L686_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.260e-22
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    4 ASREVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            ASREVWSHDEEEVLWRAQKEYGNAWN+I+SLLPGRSENAVKNHW
Sbjct:  617 ASREVWSHDEEEVLWRAQKEYGNAWNYISSLLPGRSENAVKNHW 660          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: F0XZ12_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ12_AURAN)

HSP 1 Score: 61.2 bits (147), Expect = 7.830e-11
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   10 REVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            RE WS  EE V++ AQ+  GN W  IA LLPGR++NA+KNHW
Sbjct:   72 REPWSEHEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHW 113          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: D2UY60_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY60_NAEGR)

HSP 1 Score: 60.5 bits (145), Expect = 1.340e-10
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   19 WSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            W+ +E+ ++++A K+YGN W  IA LLPGR++NA+KNHW
Sbjct:   60 WTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDNAIKNHW 98          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.080e-10
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   10 REVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            RE WS  EE V++ AQ   GN W  IA LLPGR++NA+KNHW
Sbjct:   83 REPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHW 124          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: D8QZP1_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QZP1_SELML)

HSP 1 Score: 58.5 bits (140), Expect = 2.120e-10
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   10 REVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            R++W  DEE++L  A    GN W  IA L+PGR+ENA+KNHW
Sbjct:   17 RDIWREDEEQLLVSAHNRLGNKWADIAKLIPGRTENAIKNHW 58          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: A0A835YW24_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW24_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.400e-10
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   10 REVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            ++ W+ +EEEVL +A   +GN W  IA LLPGR++NA+KNHW
Sbjct:   58 KDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHW 99          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: UPI00083C7032 (myb-related protein B isoform X2 n=2 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C7032)

HSP 1 Score: 62.0 bits (149), Expect = 5.220e-10
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   10 REVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            +  W+  E++V++RA KE+GN W  IA LLPGR++NA+KNHW
Sbjct:  151 KSAWTEQEDDVIYRAHKEWGNQWAKIAKLLPGRTDNAIKNHW 192          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: G0R0C8_ICHMG (Myb-like DNA-binding domain protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R0C8_ICHMG)

HSP 1 Score: 60.5 bits (145), Expect = 6.320e-10
Identity = 23/45 (51.11%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 QASREVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            Q ++E W+ DEE ++++A KEYGN W+ IA  LPGR++N++KNH+
Sbjct:   59 QINKEQWAADEEMIIFKAHKEYGNKWSEIAKYLPGRTDNSIKNHF 103          
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Match: A0A7S3ZTY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTY8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.970e-10
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   10 REVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW 135
            RE WS  EE V++ AQ+  GN W  IA LLPGR++NA+KNHW
Sbjct:   95 REPWSEQEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHW 136          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103386.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHQ3_ECTSI2.080e-2293.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L686_9PHAE6.260e-2295.45MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
F0XZ12_AURAN7.830e-1159.52Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D2UY60_NAEGR1.340e-1053.85Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
F0Y4P7_AURAN2.080e-1059.52Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D8QZP1_SELML2.120e-1054.76Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
A0A835YW24_9STRA2.400e-1054.76Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
UPI00083C70325.220e-1054.76myb-related protein B isoform X2 n=2 Tax=Nicrophor... [more]
G0R0C8_ICHMG6.320e-1051.11Myb-like DNA-binding domain protein n=1 Tax=Ichthy... [more]
A0A7S3ZTY8_9STRA6.970e-1059.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103386contigF-distichus_contig103386:1654..1791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue8.9e-18
Seed eggNOG ortholog2880.D7FHQ3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006310.1
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.2601163-CDS-F-distichus_contig103386:1653..17911622928952.2601163-CDS-F-distichus_contig103386:1653..1791Fucus distichus monoicousCDSF-distichus_contig103386 1654..1791 +
1690885079.8829765-CDS-F-distichus_contig103386:1653..17911690885079.8829765-CDS-F-distichus_contig103386:1653..1791Fucus distichus monoicousCDSF-distichus_contig103386 1654..1791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103386.299.1prot_F-distichus_contig103386.299.1Fucus distichus monoicouspolypeptideF-distichus_contig103386 1654..1791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103386.299.1

>prot_F-distichus_contig103386.299.1 ID=prot_F-distichus_contig103386.299.1|Name=mRNA_F-distichus_contig103386.299.1|organism=Fucus distichus monoicous|type=polypeptide|length=46bp
QASREVWSHDEEEVLWRAQKEYGNAWNHIASLLPGRSENAVKNHW*
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mRNA from alignment at F-distichus_contig103386:1654..1791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103386.299.1 ID=mRNA_F-distichus_contig103386.299.1|Name=mRNA_F-distichus_contig103386.299.1|organism=Fucus distichus monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at F-distichus_contig103386:1654..1791+ (Fucus distichus monoicous)
CAGGCGAGCAGAGAGGTGTGGTCACACGACGAGGAAGAAGTGCTCTGGCG CGCCCAAAAAGAGTACGGCAATGCTTGGAATCACATCGCCAGCCTCTTGC CGGGGCGTTCGGAAAACGCCGTGAAGAATCATTGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig103386:1654..1791+

>mRNA_F-distichus_contig103386.299.1 ID=mRNA_F-distichus_contig103386.299.1|Name=mRNA_F-distichus_contig103386.299.1|organism=Fucus distichus monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at F-distichus_contig103386:1654..1791+ (Fucus distichus monoicous)
CAGGCGAGCAGAGAGGTGTGGTCACACGACGAGGAAGAAGTGCTCTGGCG
CGCCCAAAAAGAGTACGGCAATGCTTGGAATCACATCGCCAGCCTCTTGC
CGGGGCGTTCGGAAAACGCCGTGAAGAATCATTGGTGACAGGCGAGCAGA
GAGGTGTGGTCACACGACGAGGAAGAAGTGCTCTGGCGCGCCCAAAAAGA
GTACGGCAATGCTTGGAATCACATCGCCAGCCTCTTGCCGGGGCGTTCGG
AAAACGCCGTGAAGAATCATTGGTGA
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