mRNA_F-distichus_contig103381.298.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103381.298.1
Unique NamemRNA_F-distichus_contig103381.298.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103381.298.1 vs. uniprot
Match: A0A6H5KEE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE1_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.230e-5
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 RWKCIVEGCGKIPSFGVAGTETAEYFALHAPDGMIDVRSRNRK 129
            R KC V+GCGK PSFGVAGT +A++  +HA    ++VR+ NRK
Sbjct:    3 RTKCPVQGCGKEPSFGVAGTRSAKWCRVHADPSHVNVRA-NRK 44
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103381.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEE1_9PHAE1.230e-555.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103381contigF-distichus_contig103381:1780..2010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.2115865-CDS-F-distichus_contig103381:1779..20101622928952.2115865-CDS-F-distichus_contig103381:1779..2010Fucus distichus monoicousCDSF-distichus_contig103381 1780..2010 +
1690885079.868343-CDS-F-distichus_contig103381:1779..20101690885079.868343-CDS-F-distichus_contig103381:1779..2010Fucus distichus monoicousCDSF-distichus_contig103381 1780..2010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103381.298.1prot_F-distichus_contig103381.298.1Fucus distichus monoicouspolypeptideF-distichus_contig103381 1780..2010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103381.298.1

>prot_F-distichus_contig103381.298.1 ID=prot_F-distichus_contig103381.298.1|Name=mRNA_F-distichus_contig103381.298.1|organism=Fucus distichus monoicous|type=polypeptide|length=77bp
RWKCIVEGCGKIPSFGVAGTETAEYFALHAPDGMIDVRSRNRKCKTEGCD
KLPSFGVAGTKTAEYCAQHASDGTVDV
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mRNA from alignment at F-distichus_contig103381:1780..2010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103381.298.1 ID=mRNA_F-distichus_contig103381.298.1|Name=mRNA_F-distichus_contig103381.298.1|organism=Fucus distichus monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at F-distichus_contig103381:1780..2010+ (Fucus distichus monoicous)
CGCTGGAAGTGCATAGTCGAAGGCTGCGGCAAGATTCCATCGTTCGGAGT
TGCAGGTACGGAAACGGCGGAGTATTTTGCACTGCACGCACCAGACGGGA
TGATTGACGTCAGGAGCAGAAACAGGAAGTGCAAAACCGAAGGCTGCGAC
AAGCTTCCATCGTTTGGAGTGGCGGGTACGAAAACGGCGGAGTACTGTGC
ACAGCACGCCTCGGACGGGACGGTGGACGTC
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Coding sequence (CDS) from alignment at F-distichus_contig103381:1780..2010+

>mRNA_F-distichus_contig103381.298.1 ID=mRNA_F-distichus_contig103381.298.1|Name=mRNA_F-distichus_contig103381.298.1|organism=Fucus distichus monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at F-distichus_contig103381:1780..2010+ (Fucus distichus monoicous)
CGCTGGAAGTGCATAGTCGAAGGCTGCGGCAAGATTCCATCGTTCGGAGT
TGCAGGTACGGAAACGGCGGAGTATTTTGCACTGCACGCACCAGACGGGA
TGATTGACGTCAGGAGCAGAAACAGGAAGTGCAAAACCGAAGGCTGCGAC
AAGCTTCCATCGTTTGGAGTGGCGGGTACGAAAACGGCGGAGTACTGTGC
ACAGCACGCCTCGGACGGGACGGTGGACGTCCGCTGGAAGTGCATAGTCG
AAGGCTGCGGCAAGATTCCATCGTTCGGAGTTGCAGGTACGGAAACGGCG
GAGTATTTTGCACTGCACGCACCAGACGGGATGATTGACGTCAGGAGCAG
AAACAGGAAGTGCAAAACCGAAGGCTGCGACAAGCTTCCATCGTTTGGAG
TGGCGGGTACGAAAACGGCGGAGTACTGTGCACAGCACGCCTCGGACGGG
ACGGTGGACGTC
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