mRNA_F-distichus_contig10338.297.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10338.297.1
Unique NamemRNA_F-distichus_contig10338.297.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10338.297.1 vs. uniprot
Match: D7G7I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I1_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.430e-43
Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:    1 QLDAHTRTLVESFGTLLRSAKITNPQAVTREDFQVNVATASLATAGEGLLRQIREVKLAVMLQDEAAMDREVDQALEKMAKERKSLEKELEALSNELKAAYAKEAMGG 324
            QLDAHTRTLVESFG L+R AKITNPQ+  RE+FQVNVATASLATAGEGLLRQIRE+KLAVMLQDEAAMD EVDQAL K+A ER+ LEKELEALSN+LK AYAK AM G
Sbjct:   29 QLDAHTRTLVESFGGLVRLAKITNPQSTEREEFQVNVATASLATAGEGLLRQIRELKLAVMLQDEAAMDLEVDQALAKIASEREELEKELEALSNDLKGAYAKAAMAG 136
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BLAST of mRNA_F-distichus_contig10338.297.1 vs. uniprot
Match: A0A6H5JD54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD54_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.500e-43
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:    1 QLDAHTRTLVESFGTLLRSAKITNPQAVTREDFQVNVATASLATAGEGLLRQIREVKLAVMLQDEAAMDREVDQALEKMAKERKSLEKELEALSNELKAAYAKEAMGG 324
            +LDAHTRTLVESFG L+R AKITNPQ+  RE+FQVNVATASLATAGEGLLRQIRE+KLAVMLQDEAAMD EVDQAL K+A ERK LEKELEALSNELK AYAK AM G
Sbjct:   83 RLDAHTRTLVESFGGLVRLAKITNPQSTEREEFQVNVATASLATAGEGLLRQIRELKLAVMLQDEAAMDLEVDQALAKIATERKELEKELEALSNELKGAYAKAAMAG 190
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BLAST of mRNA_F-distichus_contig10338.297.1 vs. uniprot
Match: A0A7S2UVX4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVX4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.570e-7
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    1 QLDAHTRTLVESFGTLLRSAKITNPQAVTREDFQVNVATASLATAGEGLLRQIREVKLAVMLQDEAAMDREVDQALEKMAKERKSLEKELEALSNELKAAY 303
            QLDA+   LVE++G +++SAK+ +   +  +  Q+   T S+  A E L+ Q+RE+KLA+ LQD  A++ +   A   + +     +  +E L  +LKAAY
Sbjct:   11 QLDANIARLVEAYGGMIQSAKVGDKTRLHLDALQLTSHTISIEQAAESLIGQVRELKLALALQDAEALEADAQHARATLEERYNGSKNHVEELREQLKAAY 111
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10338.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7I1_ECTSI1.430e-4383.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD54_9PHAE2.500e-4384.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UVX4_9STRA3.570e-734.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10338contigF-distichus_contig10338:1115..3951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med22
Ec32 orthologEc-02_000370.1
Exons3
Model size1613
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10338.297.1prot_F-distichus_contig10338.297.1Fucus distichus monoicouspolypeptideF-distichus_contig10338 1920..2791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.0992665-UTR-F-distichus_contig10338:1114..12161622928952.0992665-UTR-F-distichus_contig10338:1114..1216Fucus distichus monoicousUTRF-distichus_contig10338 1115..1216 +
1690885079.8160875-UTR-F-distichus_contig10338:1114..12161690885079.8160875-UTR-F-distichus_contig10338:1114..1216Fucus distichus monoicousUTRF-distichus_contig10338 1115..1216 +
1622928952.1137047-UTR-F-distichus_contig10338:1841..19191622928952.1137047-UTR-F-distichus_contig10338:1841..1919Fucus distichus monoicousUTRF-distichus_contig10338 1842..1919 +
1690885079.8275962-UTR-F-distichus_contig10338:1841..19191690885079.8275962-UTR-F-distichus_contig10338:1841..1919Fucus distichus monoicousUTRF-distichus_contig10338 1842..1919 +
1622928952.159704-UTR-F-distichus_contig10338:2791..39511622928952.159704-UTR-F-distichus_contig10338:2791..3951Fucus distichus monoicousUTRF-distichus_contig10338 2792..3951 +
1690885079.8548117-UTR-F-distichus_contig10338:2791..39511690885079.8548117-UTR-F-distichus_contig10338:2791..3951Fucus distichus monoicousUTRF-distichus_contig10338 2792..3951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.127064-CDS-F-distichus_contig10338:1919..19281622928952.127064-CDS-F-distichus_contig10338:1919..1928Fucus distichus monoicousCDSF-distichus_contig10338 1920..1928 +
1690885079.8362415-CDS-F-distichus_contig10338:1919..19281690885079.8362415-CDS-F-distichus_contig10338:1919..1928Fucus distichus monoicousCDSF-distichus_contig10338 1920..1928 +
1622928952.1446302-CDS-F-distichus_contig10338:2527..27911622928952.1446302-CDS-F-distichus_contig10338:2527..2791Fucus distichus monoicousCDSF-distichus_contig10338 2528..2791 +
1690885079.8455613-CDS-F-distichus_contig10338:2527..27911690885079.8455613-CDS-F-distichus_contig10338:2527..2791Fucus distichus monoicousCDSF-distichus_contig10338 2528..2791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10338.297.1

>prot_F-distichus_contig10338.297.1 ID=prot_F-distichus_contig10338.297.1|Name=mRNA_F-distichus_contig10338.297.1|organism=Fucus distichus monoicous|type=polypeptide|length=91bp
MLQDEAAMDREVDQALEKMAKERKSLEKELEALSNELKAAYAKEAMGGTD
PTQRMEEAEEPPEGSTGSIDFGNLGVGAAEGGVGIDRPAR*
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mRNA from alignment at F-distichus_contig10338:1115..3951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10338.297.1 ID=mRNA_F-distichus_contig10338.297.1|Name=mRNA_F-distichus_contig10338.297.1|organism=Fucus distichus monoicous|type=mRNA|length=2837bp|location=Sequence derived from alignment at F-distichus_contig10338:1115..3951+ (Fucus distichus monoicous)
CAGCTGGACGCACACACTCGGACCTTGGTGGAAAGCTTCGGCACGCTGCT
GCGGTCGGCTAAAATCACCAATCCTCAGGCCGTCACTCGGGAAGATTTCC
AGGTCAACTCCCTTTACCCGAGCGACAAGACACGTTAGAGCTATCATATC
ATCGATACCGTACCGTACTAATACCGCAATAAAATACAATAACATTCAAT
CGACTTAAATAGTAACTACTGATGCTGCAGATGGCGATTCGAGCGGAAAT
ACGACTAGAGTTGCCGCTCGTCGCCCGAGTGGTCTAGTAGGTAACCTGCA
TACCTGCTAGTGCGGAAGCCGCGAGTTCGATTCTTACCAACGTAGGATTT
TTGTTCTTTCTTTCGTAACGGAAAGCGTGGGAACGCGAGTAAGTAAAATT
CAACCCATAGTTGACGAGTTGTAAGATTGCTGAACTTGCATCGCGATTAA
AAAAAATGGTAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTGAC
CACAGGCAGGATGGTAATTAGGAGGTTCATCGGCTATAAGAGAGATCCAC
GATAGACTTGGTTGCCACCACCTAAAGAGTTTAAACGTTGGCTGATGCTA
GATCGATCTACGACAGCGACCAGCACTCTTGACGCTCGTGGCAGTTAATA
ATGCCTAGCCATGGAGTAGATCAGACCACTGCCATTTCATTGATGTAAGG
AGCAAAGATGTATATTTTGTGGTCCAGGTGAACGTTGCCACGGCCAGCCT
AGCGACCGCGGGGGAGGGTCTTCTCCGACAAATTCGGGAGGTGAAGCTGG
CCGTCATGCTGCAGGTGCAAAAGACACGAGAGGATTAGTAGAGTAGTGTA
TAGAAGTTGCATCAAGTTTATCTAGTTTTAGCGATGCCTTGCGGCGGGTA
CTAGGGCAAGATCGAGGGGTACGGTTTTCCCCTCGTAAAGCTTTCGGAGG
GAGGGAGCATCATGCCTCGTGCTCTCCTTTCAAGATTCATCCTTGACATT
CGAAGTTACCTCGAGGTGACGGTGACAGCACAGAACCGTCTTCTAAAGCT
ACAATAACTGTAGTACAGCGTCGTTCTATGGCATGCCTCCAGTTCTATAG
CAAACACCGGGGGGTATTTGGTAGATGTCCCCGCTCGATCCCTTCCGCTT
GATCCCCTCGACACAAACGAAGAATCTCTTGCCGAAATATGACAGTTTTT
GTTTTTTAAGGGTTCGGCTGTCATCAAAATACTATTATATTGTACCGGTA
TTAATATAAGGAAGGGGGGGTGGGTGGAGGATATCCCCAGCTCTCTATCG
GTAGGTAGTATTGTATGCATGAGTGACGTTGTACCGCCTAGTCACTTTTT
CGGCCGGGTGAACCCATCCACCCATCCCATCAAAACCCCTTGCTTTGGCC
CTGGCGCCTGCAGGACGAGGCTGCGATGGATCGCGAGGTGGATCAAGCGC
TTGAGAAGATGGCAAAGGAGAGGAAAAGTCTCGAGAAGGAGCTAGAGGCC
CTGTCCAACGAGCTCAAGGCGGCCTATGCCAAGGAAGCCATGGGAGGGAC
CGACCCGACGCAGCGGATGGAAGAAGCGGAAGAACCGCCCGAAGGTAGCA
CTGGGTCCATTGATTTTGGCAACTTGGGGGTGGGGGCAGCTGAAGGCGGC
GTGGGAATTGATCGGCCAGCTCGATAGCTGCAGGTGCCTTTCGTAGGATG
AACATTGTACTGTATGTTGATGGTTGACACCTTTCGATGCTCGAGGAGGG
GGATGGGACTGATCCCGAAGCGTTTTTTCTTTTTCCAAGTTTGAAGTCTG
ACGGATTCGCCCTATTCACAGTTAACTTCGGTAGTGTACCCGGTTCGGTA
GGTGTAGTTTACTGAAGTCGTTGATTCCAAGTTGTATGGCGTTACTTTGT
TTTTTTAGGTTTGTTGTTATGTCGTCTTTCCTTCGGACGCTGTGCTAGGG
TTCGAGCCGTGACATTAATTTACAAATAATTTGTGCACCTGTTTGGTCGA
GCTCGCCTGGGCAATATTTTTACCAATTCTATTGGGTGATACATGCTGTA
GTGGCCCTACGGCAGCGATTTATAACTAGAAACACGTGCTAGAGTTCAGT
GGAAAGGGGGAAACGTCCCAAACATATACTTTATAAAGTATACTTTACCA
CCGGGCGAAACAAAAAATCTTGTATTTTCTGTCCTCCAGCGTTGGTGAGA
TACAGTACCCGCTGGACAAGGATGACTCATTTCTGGGTCGGACCAACCCA
GCCTATCCCAGCCTATTTCCTAAAAATGCCCATTTCTTTTTTTACTGGCG
AGAAAATCCTACTTCCACGACATTCCTTATTTTGTTTTCATCTTCTACTG
TATTTTTTCTGTTTGGAGTAGAAGCTGCTGGTATTGCAGGCGCACCTTAC
CGTTACGTGTGCAAACCTTACCGTTACTTGTGTGCTTTTAGTCGTTTGCC
CAGCTGTGGGGGGTTATTGTTAACTATTACCTGTATTAACTATTATTGGT
TATTAAATTTGGCCGTCGTGTGATGGCGGGGGCCAGCCAGTCAGCCAGGG
AAGGAAGGGATGAAGAAATGAAGGGGTGACATTTCTTAGGTTGTGGCCGA
CTCCGAGGCTCGGGCGTTTCTTAAATTCTCGAGAATCCCAGCCTGAAATT
CTTATTAGAACGGAACGTTGCTTACGCTGTCTTTTTTCCCCATCGGGAGA
AAAAATCCATGTCTTGGGCCGTTTCTTATGCTGCCGTTTTTTCCCATGGG
AAGTTGCTCCTATTTCCGGTCGGGGAGGCAATTGCCCCTATTTGCATCAT
CGTGTTGCAACACTTCTATGGCAACACGGTCGACGCC
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Coding sequence (CDS) from alignment at F-distichus_contig10338:1115..3951+

>mRNA_F-distichus_contig10338.297.1 ID=mRNA_F-distichus_contig10338.297.1|Name=mRNA_F-distichus_contig10338.297.1|organism=Fucus distichus monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at F-distichus_contig10338:1115..3951+ (Fucus distichus monoicous)
ATGCTGCAGATGCTGCAGGACGAGGCTGCGATGGATCGCGAGGTGGATCA
AGCGCTTGAGAAGATGGCAAAGGAGAGGAAAAGTCTCGAGAAGGAGCTAG
AGGCCCTGTCCAACGAGCTCAAGGCGGCCTATGCCAAGGAAGCCATGGGA
GGGACCGACCCGACGCAGCGGATGGAAGAAGCGGAAGAACCGCCCGAAGG
TAGCACTGGGTCCATTGATTTTGGCAACTTGGGGGTGGGGGCAGCTGAAG
GCGGCGTGGGAATTGATCGGCCAGCTCGATAGGACGAGGCTGCGATGGAT
CGCGAGGTGGATCAAGCGCTTGAGAAGATGGCAAAGGAGAGGAAAAGTCT
CGAGAAGGAGCTAGAGGCCCTGTCCAACGAGCTCAAGGCGGCCTATGCCA
AGGAAGCCATGGGAGGGACCGACCCGACGCAGCGGATGGAAGAAGCGGAA
GAACCGCCCGAAGGTAGCACTGGGTCCATTGATTTTGGCAACTTGGGGGT
GGGGGCAGCTGAAGGCGGCGTGGGAATTGATCGGCCAGCTCGATAG
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