mRNA_F-distichus_contig10333.294.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10333.294.1
Unique NamemRNA_F-distichus_contig10333.294.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.620e-26
Identity = 73/163 (44.79%), Postives = 95/163 (58.28%), Query Frame = 1
Query:   25 VARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKDN--RETVDGGDGGGR------------------NEGS------GYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPRVPQELPAQPIDI 435
            VA EL++    T  R+P +EV ET ++ TL +DLPGCKK+DVDAQ+SED G KTL ITAVR++P   D   R      D  G                   +E +        +   EE F+LSF +GE +DVS +RG +EDGVLTLVLP++  E PA+PIDI
Sbjct:   91 VACELSDPT--TEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTPEPSLSSFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPKLAPEPPAEPIDI 251          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A1L9B4K1_9DELT (SHSP domain-containing protein n=3 Tax=Cystobacter TaxID=42 RepID=A0A1L9B4K1_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 2.390e-9
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = 1
Query:    1 IIILRHDTVARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPR 399
            +++   D   R+L     G+    P  +++ETAE +TL +DLPG   + ++ ++  D    TL + + R+RP +              ++EG+   +     F  SF+L   VD SRV  + E+GVLTL LPR
Sbjct:   20 LVLREFDQFFRDLPVRPSGSREFAPAADIYETAEGITLQVDLPGHDARSIEVKVEND----TLTLKSERKRPESP-------------KDEGTRRLERNFGVFTRSFVLPRTVDPSRVEARYENGVLTLSLPR 135          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A250IIS1_9DELT (Heat-shock protein n=2 Tax=Archangiaceae TaxID=39 RepID=A0A250IIS1_9DELT)

HSP 1 Score: 61.6 bits (148), Expect = 3.560e-9
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 1
Query:    1 IIILRHDTVARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPR 399
            +++   D + R+L+  + G     P  ++ ETAE +TL +DLPG   + ++ ++  D    TL + + R+R  ++             +NEG+   +     +  SF L   VD SRV  + E+GVLTL LPR
Sbjct:   21 LVMREFDQIFRDLSVRQTGAREFVPAADIHETAEGITLQVDLPGHDAKSIEVRVEND----TLTLKSERKRDPSESQ-----------KNEGTRRLERSFGVYTRSFALPRTVDASRVEARYENGVLTLTLPR 138          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A0B5E4X9_9RHOB (Heat shock protein Hsp20 n=19 Tax=root TaxID=1 RepID=A0A0B5E4X9_9RHOB)

HSP 1 Score: 54.3 bits (129), Expect = 1.430e-6
Identity = 36/133 (27.07%), Postives = 60/133 (45.11%), Query Frame = 1
Query:   19 DTVARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPRVPQELP 417
            D    E  E+  G     P  ++ ETA+ VTL +++PG   +DVD  + +       R+  +R + H     +               YA+ GE  FE +F + +  D  ++  ++ +GVLTL LPR  +  P
Sbjct:   10 DKTPAETPETTTGRRIYRPLTDIVETADGVTLTLEMPGVAAEDVDITLEK-------RVLTIRGKVHATQPEKLQ-----------LAYAEYGEGDFERAFTMSDDFDPDKIGAQVSNGVLTLTLPRAAEAQP 124          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A0T5NMP4_9RHOB (Heat-shock protein Hsp20 n=1 Tax=Roseovarius atlanticus TaxID=1641875 RepID=A0A0T5NMP4_9RHOB)

HSP 1 Score: 54.3 bits (129), Expect = 1.430e-6
Identity = 36/117 (30.77%), Postives = 57/117 (48.72%), Query Frame = 1
Query:   73 PRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRR--PHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPRVPQELP 417
            P  ++ ETAE VTLN+++PG    DVD  + +       R+  +R +  P   +  +               YA+ GE  FE SF LG+  D  ++  ++  GVLT+ LPR+ +  P
Sbjct:   28 PLADIVETAEGVTLNLEMPGVAADDVDITLEK-------RVLTIRGKVQPTAPEALQLA-------------YAEYGEGDFERSFTLGDDFDPDKIGAEVSHGVLTVTLPRLAEASP 124          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A1Q3H9J3_9DELT (SHSP domain-containing protein n=4 Tax=Archangium TaxID=47 RepID=A0A1Q3H9J3_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-6
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 1
Query:   19 DTVARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRR---RPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPRVPQELP 417
            D + REL+  +       P  +++ETAE +TL +DLPG   + ++ ++  D    TL I + R+   RP  KD+   ++   G                +  SF++   VD SRV  + E+GVLTL LPR  +  P
Sbjct:   26 DQLFRELSVRQGNARELVPPADIYETAEGITLQVDLPGHDAKSIEVKVEND----TLTIKSERKVAERPE-KDSARRLERSFG---------------VYARSFVVPRTVDASRVEARYENGVLTLTLPRREESRP 141          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A0B2RPZ0_GLYSO (18.2 kDa class I heat shock protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0B2RPZ0_GLYSO)

HSP 1 Score: 52.8 bits (125), Expect = 6.800e-6
Identity = 37/109 (33.94%), Postives = 55/109 (50.46%), Query Frame = 1
Query:   91 ETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPRVPQELP 417
            ET ES     DLPG KK++V  ++ E    + L I+  R          +V+  D   +NE     + G  KF+  F L E   V  V+  ME+GVLT+++P+VP + P
Sbjct:   43 ETPESHVFKADLPGLKKEEVKVEVEE---GRVLNISGER----------SVEKED---KNEKWHRVERGRGKFQRKFWLPEDAKVDEVKASMENGVLTVIVPKVPDKKP 135          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A2T4V3Q7_VITXG (SHSP domain-containing protein n=1 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4V3Q7_VITXG)

HSP 1 Score: 52.8 bits (125), Expect = 7.400e-6
Identity = 42/130 (32.31%), Postives = 63/130 (48.46%), Query Frame = 1
Query:   19 DTVARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFEL---SFLLGEGVDVSRVRGKMEDGVLTLVLPR 399
            D + R+L+  +  +    P  +++ETAE +TL +DLPG   + ++ ++  D    TL + + R     K  R   DG            A   E  F +   SF+L   VD SRV  + E+GVLTL LPR
Sbjct:   26 DQLFRDLSARQGSSRELVPPADIYETAEGITLQVDLPGHDPKAIEVKVEHD----TLTLKSER-----KVERSDKDG------------ARRLERSFGVYTRSFVLPRTVDASRVEARYENGVLTLTLPR 134          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A5K1CZB9_9MAGN (Uncharacterized protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CZB9_9MAGN)

HSP 1 Score: 52.8 bits (125), Expect = 8.160e-6
Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 1
Query:   91 ETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPRVPQELP 417
            ET ++    +DLPG KK++V  ++ E    K L+I+  R R   +             +NE     +    KF   F L E V V +V+  MEDGVLT+ +P+VP+  P
Sbjct:   55 ETPDAHVFKVDLPGLKKEEVKVELEE---GKVLKISGERSRESEE-------------KNEKWHRVERSSGKFLRRFRLPENVMVDQVKAAMEDGVLTVTVPKVPEPKP 147          
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Match: A0A6B3SR78_9BURK (Hsp20/alpha crystallin family protein n=1 Tax=Noviherbaspirillum galbum TaxID=2709383 RepID=A0A6B3SR78_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 8.290e-6
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 1
Query:   64 TRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITA-VRRRPHNKDNRETVDGGDGGGRNEGSGYADAGEEKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPR 399
            T +PR  V ET ++  L  +LPG KK+DV   + +    + L I A V+R    K+    V             YA+    KF  SF L   VD S    ++E+GVLTL LP+
Sbjct:   49 TVSPRINVVETDKAFELQAELPGVKKEDVAINVQD----RRLTIEAEVKRTEEKKEGENLV-------------YAERASRKFARSFALPAEVDESAAEARLENGVLTLTLPK 144          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10333.294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5P0_ECTSI4.620e-2644.79SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1L9B4K1_9DELT2.390e-930.83SHSP domain-containing protein n=3 Tax=Cystobacter... [more]
A0A250IIS1_9DELT3.560e-930.08Heat-shock protein n=2 Tax=Archangiaceae TaxID=39 ... [more]
A0A0B5E4X9_9RHOB1.430e-627.07Heat shock protein Hsp20 n=19 Tax=root TaxID=1 Rep... [more]
A0A0T5NMP4_9RHOB1.430e-630.77Heat-shock protein Hsp20 n=1 Tax=Roseovarius atlan... [more]
A0A1Q3H9J3_9DELT1.980e-630.88SHSP domain-containing protein n=4 Tax=Archangium ... [more]
A0A0B2RPZ0_GLYSO6.800e-633.9418.2 kDa class I heat shock protein n=2 Tax=Glycin... [more]
A0A2T4V3Q7_VITXG7.400e-632.31SHSP domain-containing protein n=1 Tax=Vitiosangiu... [more]
A0A5K1CZB9_9MAGN8.160e-633.03Uncharacterized protein (Fragment) n=2 Tax=Nymphae... [more]
A0A6B3SR78_9BURK8.290e-634.51Hsp20/alpha crystallin family protein n=1 Tax=Novi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10333contigF-distichus_contig10333:7715..8149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue4.8e-09
Seed eggNOG ortholog1242864.D187_002039
Preferred namehspA
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the small heat shock protein (HSP20) family
EggNOG OGsCOG0071@1,COG0071@2
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-12_008570.1
COG Functional cat.O
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.8980217-CDS-F-distichus_contig10333:7714..81491622928951.8980217-CDS-F-distichus_contig10333:7714..8149Fucus distichus monoicousCDSF-distichus_contig10333 7715..8149 -
1690885079.776111-CDS-F-distichus_contig10333:7714..81491690885079.776111-CDS-F-distichus_contig10333:7714..8149Fucus distichus monoicousCDSF-distichus_contig10333 7715..8149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10333.294.1prot_F-distichus_contig10333.294.1Fucus distichus monoicouspolypeptideF-distichus_contig10333 7715..8149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10333.294.1

>prot_F-distichus_contig10333.294.1 ID=prot_F-distichus_contig10333.294.1|Name=mRNA_F-distichus_contig10333.294.1|organism=Fucus distichus monoicous|type=polypeptide|length=145bp
IIILRHDTVARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDV
DAQISEDDGAKTLRITAVRRRPHNKDNRETVDGGDGGGRNEGSGYADAGE
EKFELSFLLGEGVDVSRVRGKMEDGVLTLVLPRVPQELPAQPIDI
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mRNA from alignment at F-distichus_contig10333:7715..8149-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10333.294.1 ID=mRNA_F-distichus_contig10333.294.1|Name=mRNA_F-distichus_contig10333.294.1|organism=Fucus distichus monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at F-distichus_contig10333:7715..8149- (Fucus distichus monoicous)
ATCATTATCCTACGACACGATACAGTTGCTCGTGAACTGACGGAGTCGCG ATTCGGCACCTTGACCCGCACTCCGCGCCACGAAGTGTTCGAGACGGCCG AATCGGTAACGCTGAACATCGACCTCCCTGGATGCAAGAAACAAGACGTC GATGCACAGATCTCTGAAGATGACGGTGCGAAGACGCTCCGCATCACGGC TGTCAGGAGAAGACCGCACAACAAAGACAACAGAGAGACCGTTGACGGGG GTGACGGCGGCGGTCGCAACGAGGGCTCTGGTTACGCCGACGCCGGGGAA GAGAAATTCGAGCTTTCCTTCCTGCTTGGGGAGGGTGTCGACGTATCTCG AGTCCGCGGAAAGATGGAAGATGGTGTGCTCACGCTGGTACTGCCTAGGG TGCCGCAAGAGCTACCCGCGCAGCCGATTGACATC
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Coding sequence (CDS) from alignment at F-distichus_contig10333:7715..8149-

>mRNA_F-distichus_contig10333.294.1 ID=mRNA_F-distichus_contig10333.294.1|Name=mRNA_F-distichus_contig10333.294.1|organism=Fucus distichus monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at F-distichus_contig10333:7715..8149- (Fucus distichus monoicous)
ATCATTATCCTACGACACGATACAGTTGCTCGTGAACTGACGGAGTCGCG
ATTCGGCACCTTGACCCGCACTCCGCGCCACGAAGTGTTCGAGACGGCCG
AATCGGTAACGCTGAACATCGACCTCCCTGGATGCAAGAAACAAGACGTC
GATGCACAGATCTCTGAAGATGACGGTGCGAAGACGCTCCGCATCACGGC
TGTCAGGAGAAGACCGCACAACAAAGACAACAGAGAGACCGTTGACGGGG
GTGACGGCGGCGGTCGCAACGAGGGCTCTGGTTACGCCGACGCCGGGGAA
GAGAAATTCGAGCTTTCCTTCCTGCTTGGGGAGGGTGTCGACGTATCTCG
AGTCCGCGGAAAGATGGAAGATGGTGTGCTCACGCTGGTACTGCCTAGGG
TGCCGCAAGAGCTACCCGCGCAGCCGATTGACATCATCATTATCCTACGA
CACGATACAGTTGCTCGTGAACTGACGGAGTCGCGATTCGGCACCTTGAC
CCGCACTCCGCGCCACGAAGTGTTCGAGACGGCCGAATCGGTAACGCTGA
ACATCGACCTCCCTGGATGCAAGAAACAAGACGTCGATGCACAGATCTCT
GAAGATGACGGTGCGAAGACGCTCCGCATCACGGCTGTCAGGAGAAGACC
GCACAACAAAGACAACAGAGAGACCGTTGACGGGGGTGACGGCGGCGGTC
GCAACGAGGGCTCTGGTTACGCCGACGCCGGGGAAGAGAAATTCGAGCTT
TCCTTCCTGCTTGGGGAGGGTGTCGACGTATCTCGAGTCCGCGGAAAGAT
GGAAGATGGTGTGCTCACGCTGGTACTGCCTAGGGTGCCGCAAGAGCTAC
CCGCGCAGCCGATTGACATC
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