mRNA_F-distichus_contig103329.292.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103329.292.1
Unique NamemRNA_F-distichus_contig103329.292.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.610e-31
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKPLAK 210
            MVF+AIK LKERNGSSIQAIKK ITA +PTLNFTPHQMRSALKKGVESGKF+K+K SYKLSAEAKKP  K
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.310e-31
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKPLAK 210
            MVF+AIK LKERNGSSIQAIKK ITA +PTLNFTPHQMRSALKKGVESGKFVK+K SYKLSAEAKKP  K
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
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BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.650e-30
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKPLAK 210
            MVF+AIK+LKERNGSSIQAIKK ITA +P LNFTPHQMRSALKKGVE+GKF+KVK SYKLSAEAKKP+ K
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.450e-28
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKP 201
            MVF+AIK LKERNGSSIQAIKK ITA +PTLNFTPHQMR ALKKGVESGKF+K+K SYKLS EAKKP
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKP 170
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BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.670e-27
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKP 201
            MVF+AIKALKER GSS+ A+KK I A +P+LNFTPHQMRSALKKG ESGKF+KVK SYKLS EAKKP
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 67
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BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.430e-26
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKP 201
            MVF+AIKALKER GSS+ A+KK I A +P+LNFTPHQMRSALKKG ESGKF+KVK SYKLS EAKKP
Sbjct:   12 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 78
[Close]
BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.550e-23
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKPLAK 210
            M  EA+KALKERNGSS+ AIKKHITA++P+L FT H MRSALKKGVESGKF+KVK SYKLSA  ++P AK
Sbjct:    7 MTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76
[Close]
BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-22
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSAEAKKP 201
            M   AI ALKERNGSS+ AIKKHI A +PTLNF PHQ+R ALKKG E+G F+KVK SYK+S EAKKP
Sbjct:    7 MAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.850e-22
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLS 183
            MVF+AIK LKERNGSSIQA+KK ITA +P L+FTPHQMRSALKKGVE+GKF+KV+ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
[Close]
BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.930e-21
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGKFVKVKGSYKLSA 186
            M  EA+KALKERNGSS+ AIKKHITA++P+L FT H +RSALKKGVESGKF+KVK SYKLSA
Sbjct:    7 MTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103329.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI4.610e-3185.71Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KST0_9PHAE5.310e-3187.14H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI2.650e-3084.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KCU1_9PHAE3.450e-2885.07H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE5.670e-2779.10H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI1.430e-2679.10H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LJB8_ECTSI3.550e-2374.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI2.300e-2271.64H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE3.850e-2273.77H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.930e-2177.42H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103329contigF-distichus_contig103329:873..1964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue6.6e-24
Seed eggNOG ortholog2880.D7G189
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size414
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.7080624-CDS-F-distichus_contig103329:872..10311622928951.7080624-CDS-F-distichus_contig103329:872..1031Fucus distichus monoicousCDSF-distichus_contig103329 873..1031 +
1690885079.7153947-CDS-F-distichus_contig103329:872..10311690885079.7153947-CDS-F-distichus_contig103329:872..1031Fucus distichus monoicousCDSF-distichus_contig103329 873..1031 +
1622928951.7226346-CDS-F-distichus_contig103329:1709..19641622928951.7226346-CDS-F-distichus_contig103329:1709..1964Fucus distichus monoicousCDSF-distichus_contig103329 1710..1964 +
1690885079.7283072-CDS-F-distichus_contig103329:1709..19641690885079.7283072-CDS-F-distichus_contig103329:1709..1964Fucus distichus monoicousCDSF-distichus_contig103329 1710..1964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103329.292.1prot_F-distichus_contig103329.292.1Fucus distichus monoicouspolypeptideF-distichus_contig103329 873..1964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103329.292.1

>prot_F-distichus_contig103329.292.1 ID=prot_F-distichus_contig103329.292.1|Name=mRNA_F-distichus_contig103329.292.1|organism=Fucus distichus monoicous|type=polypeptide|length=138bp
MVFEAIKALKERNGSSIQAIKKHITAAHPTLNFTPHQMRSALKKGVESGK
FVKVKGSYKLSAEAKKPLAKAKVTKKVAPKKPAKKPASAKKPAAKKATAT
KTKKVTTTKKPAAAKKPAAAKKPAAAKATTAKKATTAK
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mRNA from alignment at F-distichus_contig103329:873..1964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103329.292.1 ID=mRNA_F-distichus_contig103329.292.1|Name=mRNA_F-distichus_contig103329.292.1|organism=Fucus distichus monoicous|type=mRNA|length=1092bp|location=Sequence derived from alignment at F-distichus_contig103329:873..1964+ (Fucus distichus monoicous)
ATGGTATTCGAGGCAATCAAGGCCCTCAAGGAGCGCAACGGCTCCAGTAT
CCAGGCCATCAAGAAGCACATCACCGCCGCTCACCCTACCCTCAACTTCA
CGCCGCACCAGATGCGCAGCGCTCTGAAGAAAGGGGTCGAGTCCGGAAAG
TTCGTCAAGGTCAGTATGTCCTCTGGAGCCATAAACTTCCTATTCCTACT
GAACCCCCTTGTTTAGTGCCTACCTGGTGCATCGTAGCTTTGTATAATTT
TTTTACTTATTATCTTGAAATCTTGTCTGTTTGTGCTTCCGTTTGTGAAT
TATTTGGTTTAACTACTGTATTTCATTTCTTGTCCACCTTGCCACTCGAT
CCCGGCAAACGGGATTTTTCTCAATAAAAACTGAAAATAAAAATGGCCAA
CGGGTGGAGAACCATTAATTCGTTAGTAAACAAAATTCGACTTCACGCTC
GACGAGGGGGAGGAATGGCTGAATTATTTTCGCGATAAAAATTAGGGCAC
GCGCCGCAGAAGATAGATGAGAAATCTTGTGTGACCTACCTCTTGTGACC
CCGGCTGATACTTCCATTGATGTCCAGAATACTTCAGTATCAGTATCGTT
TTTGCAGTCAAAAAAGTTTGTACTGTGATCACAATCCAAGTAGAGGATGC
ACACTGCTGTAAACTTTTCGAAAAGAGAAAAGGGCTATAACTTTACAGTA
CCAGATTGTTCCACATTTGAGGCTAATAATGTATTTCCCTTTTTTTGAAA
TTGCATTTGGCGTGATAAAGCGTTAGCCCCAATCATAAGCCATGTTTGAA
ACTAAAATTTGACTCGACTTTTTCTGGTAACGTGCAGGTTAAGGGCTCAT
ATAAGCTAAGCGCCGAGGCCAAGAAGCCCCTTGCGAAAGCGAAGGTGACG
AAGAAGGTTGCACCCAAGAAACCCGCCAAAAAGCCTGCCAGCGCCAAGAA
ACCTGCCGCGAAGAAGGCAACAGCGACCAAGACAAAGAAGGTGACTACCA
CCAAGAAGCCCGCCGCCGCCAAGAAGCCCGCCGCCGCCAAGAAGCCCGCC
GCCGCCAAGGCTACAACCGCCAAAAAGGCCACAACCGCCAAG
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Coding sequence (CDS) from alignment at F-distichus_contig103329:873..1964+

>mRNA_F-distichus_contig103329.292.1 ID=mRNA_F-distichus_contig103329.292.1|Name=mRNA_F-distichus_contig103329.292.1|organism=Fucus distichus monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at F-distichus_contig103329:873..1964+ (Fucus distichus monoicous)
ATGGTATTCGAGGCAATCAAGGCCCTCAAGGAGCGCAACGGCTCCAGTAT
CCAGGCCATCAAGAAGCACATCACCGCCGCTCACCCTACCCTCAACTTCA
CGCCGCACCAGATGCGCAGCGCTCTGAAGAAAGGGGTCGAGTCCGGAAAG
TTCGTCAAGATGGTATTCGAGGCAATCAAGGCCCTCAAGGAGCGCAACGG
CTCCAGTATCCAGGCCATCAAGAAGCACATCACCGCCGCTCACCCTACCC
TCAACTTCACGCCGCACCAGATGCGCAGCGCTCTGAAGAAAGGGGTCGAG
TCCGGAAAGTTCGTCAAGGTTAAGGGCTCATATAAGCTAAGCGCCGAGGC
CAAGAAGCCCCTTGCGAAAGCGAAGGTGACGAAGAAGGTTGCACCCAAGA
AACCCGCCAAAAAGCCTGCCAGCGCCAAGAAACCTGCCGCGAAGAAGGCA
ACAGCGACCAAGACAAAGAAGGTGACTACCACCAAGAAGCCCGCCGCCGC
CAAGAAGCCCGCCGCCGCCAAGAAGCCCGCCGCCGCCAAGGCTACAACCG
CCAAAAAGGCCACAACCGCCAAGGTTAAGGGCTCATATAAGCTAAGCGCC
GAGGCCAAGAAGCCCCTTGCGAAAGCGAAGGTGACGAAGAAGGTTGCACC
CAAGAAACCCGCCAAAAAGCCTGCCAGCGCCAAGAAACCTGCCGCGAAGA
AGGCAACAGCGACCAAGACAAAGAAGGTGACTACCACCAAGAAGCCCGCC
GCCGCCAAGAAGCCCGCCGCCGCCAAGAAGCCCGCCGCCGCCAAGGCTAC
AACCGCCAAAAAGGCCACAACCGCCAAG
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