mRNA_F-distichus_contig1033.289.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig1033.289.1 vs. uniprot
Match: D7FMV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV0_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 5.380e-124 Identity = 273/495 (55.15%), Postives = 316/495 (63.84%), Query Frame = 1
Query: 412 NRVVQLSSIVGAGGAAIVRSVREHPRAAAATAIGALTTVWVVTERRRTGLLLYRRPRTTLFRPSDDYLSQMLDTAAGAPIASPLRGVIVSPLVGAAAKEELEDETSDDDGRVGSGVGAPGGEAKKGSHAARRTPRKVGSGGAKSPSMKPEK---GADGIDAAVVKARNARSAGNYEEVTQHGRGKVKSVCAGVRLGEGLGLYHKFAQGLGNLDAFDGRSDCELLATESASEDVGSTLALLTRTALGTWSVSPVRVVIRRETSKRGPRASRHGR----------------------RHRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGTDATEEHEEGSSLEHAEAHRQYTLALSAVEGAGWSGTWAFRVTYDAETDGVWFQTTLSQRRGAFGTIAGGDQEARVKKVNEDMLERGKKYVTMLKAREQQFTRVSSLARSRAMDKKTLERDRILNPDKYKRVHRYMLEDSYTTGGKTSRPARWGEERRRNDIRLK 1821
NR+ Q+ S VGAGGA+ R REHPRAA A GA T +WV E RR+GLL+ PR +LFRPSD YLS++L+ AA AP+ASPLRGVI+SPL +E GA I A + ++ G Y HG+G VKSVCAGVR+G+GLG+YHKFAQGLG LD FDGRSDCEL+A ES+SEDVGSTL LLTR ALGTWS+SP+RVV++RE + PR+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXX HRQYTLALSAVEGAGWSGTW FRVT DAET+ VWF+T LSQR+G+FGT AGGDQ RV +VN+DML R ++ +L+ARE+QFTRVSSLARSRA D K L RDRIL+PDKYKRVHRYM EDS+TTGG ++RPARWGEERRRNDIRLK
Sbjct: 82 NRIAQMLSAVGAGGASAARCAREHPRAAVAATAGAATALWVGKETRRSGLLVCSSPRISLFRPSDAYLSRVLEAAAEAPVASPLRGVILSPLQDPQGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAEIRATLGIMKSGAGQGTYMHEATHGKG-VKSVCAGVRVGKGLGIYHKFAQGLGKLDVFDGRSDCELMAAESSSEDVGSTLGLLTRPALGTWSLSPLRVVLKRERTLAVPRSDDDGHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERHHRQYTLALSAVEGAGWSGTWVFRVTLDAETEEVWFETKLSQRKGSFGTTAGGDQLVRVTRVNQDMLARANRHSAVLRAREEQFTRVSSLARSRAKDAKDLARDRILHPDKYKRVHRYMREDSHTTGGASARPARWGEERRRNDIRLK 575
BLAST of mRNA_F-distichus_contig1033.289.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.630e-18 Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 412 NRVVQLSSIVGAGGAAIVRSVREHPRAAAATAIGALTTVWVVTERRRTGLLLYRRPRTTLFRPSDDYLSQMLDTAAGAPIASPLRGVIVSPL 687
NR+ + S VGAGGA+ R HPRAA A GA T +WV E RR+G+L+ PR +LFRPSD YLS +L++AA AP+ASPLRGVI+SPL
Sbjct: 82 NRITHMLSAVGAGGASAAHYARAHPRAAVAATAGAATALWVGKETRRSGVLVCSSPRISLFRPSDAYLSWVLESAAEAPVASPLRGVILSPL 173 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1033.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig1033.289.1 >prot_F-distichus_contig1033.289.1 ID=prot_F-distichus_contig1033.289.1|Name=mRNA_F-distichus_contig1033.289.1|organism=Fucus distichus monoicous|type=polypeptide|length=585bp MNPLRLSTAQDPSPTTQQHPVGRQELRDGATASRMRPISRGGTSSKYVRYback to top mRNA from alignment at F-distichus_contig1033:5128..11491+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig1033.289.1 ID=mRNA_F-distichus_contig1033.289.1|Name=mRNA_F-distichus_contig1033.289.1|organism=Fucus distichus monoicous|type=mRNA|length=6364bp|location=Sequence derived from alignment at F-distichus_contig1033:5128..11491+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig1033:5128..11491+ >mRNA_F-distichus_contig1033.289.1 ID=mRNA_F-distichus_contig1033.289.1|Name=mRNA_F-distichus_contig1033.289.1|organism=Fucus distichus monoicous|type=CDS|length=3510bp|location=Sequence derived from alignment at F-distichus_contig1033:5128..11491+ (Fucus distichus monoicous)back to top |