mRNA_F-distichus_contig103191.285.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103191.285.1
Unique NamemRNA_F-distichus_contig103191.285.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103191.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103191contigF-distichus_contig103191:264..1137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size875
Cds size846
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.7704878-UTR-F-distichus_contig103191:263..2911622928949.7704878-UTR-F-distichus_contig103191:263..291Fucus distichus monoicousUTRF-distichus_contig103191 264..291 +
1690885079.1707375-UTR-F-distichus_contig103191:263..2911690885079.1707375-UTR-F-distichus_contig103191:263..291Fucus distichus monoicousUTRF-distichus_contig103191 264..291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.780219-CDS-F-distichus_contig103191:291..11371622928949.780219-CDS-F-distichus_contig103191:291..1137Fucus distichus monoicousCDSF-distichus_contig103191 292..1137 +
1690885079.1796982-CDS-F-distichus_contig103191:291..11371690885079.1796982-CDS-F-distichus_contig103191:291..1137Fucus distichus monoicousCDSF-distichus_contig103191 292..1137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103191.285.1prot_F-distichus_contig103191.285.1Fucus distichus monoicouspolypeptideF-distichus_contig103191 292..1137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103191.285.1

>prot_F-distichus_contig103191.285.1 ID=prot_F-distichus_contig103191.285.1|Name=mRNA_F-distichus_contig103191.285.1|organism=Fucus distichus monoicous|type=polypeptide|length=282bp
MPVLTSGSPLEFPTPRPGPSLLPFRRARTPATTGKASIPERQGTGEAGAS
IPSENNERENENSRGASTSSRGSRTGIAKSARVWNQERPRLGSTHGRGAP
PPRLDAAWEHQGKDHFGLPPAPAPPPLPPPRTVTPVHAGERGNLFSLSSG
GRGTVSRASLALDKHDVGIAGTEIVAVDEADASAAIAAAAAAGELPATAS
QSPTVPSPFLDVLSASGDGMSLLSSKSGRPWREATGSGFEGGRELEGETD
EVEAAAEEELTSWGASPGRRFENRGDHRRRGG
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mRNA from alignment at F-distichus_contig103191:264..1137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103191.285.1 ID=mRNA_F-distichus_contig103191.285.1|Name=mRNA_F-distichus_contig103191.285.1|organism=Fucus distichus monoicous|type=mRNA|length=874bp|location=Sequence derived from alignment at F-distichus_contig103191:264..1137+ (Fucus distichus monoicous)
AGCAGCAGCAGCAGCTGCGACTAGATCAATGCCGGTACTGACTTCGGGAT
CGCCGCTCGAGTTCCCGACCCCAAGGCCTGGACCGTCACTATTACCCTTC
CGACGCGCCCGAACTCCGGCAACCACGGGGAAGGCTTCGATTCCGGAGAG
ACAGGGGACAGGGGAAGCGGGAGCCTCAATCCCTTCGGAAAACAACGAAC
GCGAAAATGAGAACTCCCGAGGCGCGTCGACGTCGAGCCGCGGCAGTCGC
ACGGGCATAGCGAAGTCCGCGAGGGTTTGGAACCAGGAGCGGCCGCGACT
CGGGAGTACTCACGGACGAGGAGCGCCACCACCAAGGCTGGACGCCGCGT
GGGAGCACCAGGGGAAGGATCATTTCGGGCTTCCCCCGGCGCCCGCTCCT
CCCCCATTACCTCCACCCCGAACGGTTACTCCAGTCCACGCCGGAGAGAG
GGGAAACCTATTTTCTCTGTCCTCTGGAGGGCGGGGAACCGTTAGCCGAG
CCTCGTTGGCGCTCGATAAACACGACGTCGGGATTGCCGGGACGGAGATC
GTTGCCGTTGACGAGGCTGATGCTTCTGCCGCCATTGCTGCTGCTGCTGC
TGCAGGTGAGTTACCCGCAACGGCATCGCAGTCGCCGACAGTTCCCAGCC
CTTTCCTGGACGTTTTGAGTGCGAGCGGTGACGGCATGAGTTTGTTGTCT
TCCAAAAGTGGTCGTCCTTGGCGAGAAGCGACTGGTAGCGGCTTCGAAGG
CGGCCGCGAACTGGAGGGTGAGACCGACGAGGTGGAGGCGGCTGCCGAGG
AAGAGTTGACGTCGTGGGGGGCCAGCCCTGGGAGGCGTTTCGAGAACCGT
GGAGACCATCGACGGCGGGGAGGA
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Coding sequence (CDS) from alignment at F-distichus_contig103191:264..1137+

>mRNA_F-distichus_contig103191.285.1 ID=mRNA_F-distichus_contig103191.285.1|Name=mRNA_F-distichus_contig103191.285.1|organism=Fucus distichus monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at F-distichus_contig103191:264..1137+ (Fucus distichus monoicous)
ATGCCGGTACTGACTTCGGGATCGCCGCTCGAGTTCCCGACCCCAAGGCC
TGGACCGTCACTATTACCCTTCCGACGCGCCCGAACTCCGGCAACCACGG
GGAAGGCTTCGATTCCGGAGAGACAGGGGACAGGGGAAGCGGGAGCCTCA
ATCCCTTCGGAAAACAACGAACGCGAAAATGAGAACTCCCGAGGCGCGTC
GACGTCGAGCCGCGGCAGTCGCACGGGCATAGCGAAGTCCGCGAGGGTTT
GGAACCAGGAGCGGCCGCGACTCGGGAGTACTCACGGACGAGGAGCGCCA
CCACCAAGGCTGGACGCCGCGTGGGAGCACCAGGGGAAGGATCATTTCGG
GCTTCCCCCGGCGCCCGCTCCTCCCCCATTACCTCCACCCCGAACGGTTA
CTCCAGTCCACGCCGGAGAGAGGGGAAACCTATTTTCTCTGTCCTCTGGA
GGGCGGGGAACCGTTAGCCGAGCCTCGTTGGCGCTCGATAAACACGACGT
CGGGATTGCCGGGACGGAGATCGTTGCCGTTGACGAGGCTGATGCTTCTG
CCGCCATTGCTGCTGCTGCTGCTGCAGGTGAGTTACCCGCAACGGCATCG
CAGTCGCCGACAGTTCCCAGCCCTTTCCTGGACGTTTTGAGTGCGAGCGG
TGACGGCATGAGTTTGTTGTCTTCCAAAAGTGGTCGTCCTTGGCGAGAAG
CGACTGGTAGCGGCTTCGAAGGCGGCCGCGAACTGGAGGGTGAGACCGAC
GAGGTGGAGGCGGCTGCCGAGGAAGAGTTGACGTCGTGGGGGGCCAGCCC
TGGGAGGCGTTTCGAGAACCGTGGAGACCATCGACGGCGGGGAGGAATGC
CGGTACTGACTTCGGGATCGCCGCTCGAGTTCCCGACCCCAAGGCCTGGA
CCGTCACTATTACCCTTCCGACGCGCCCGAACTCCGGCAACCACGGGGAA
GGCTTCGATTCCGGAGAGACAGGGGACAGGGGAAGCGGGAGCCTCAATCC
CTTCGGAAAACAACGAACGCGAAAATGAGAACTCCCGAGGCGCGTCGACG
TCGAGCCGCGGCAGTCGCACGGGCATAGCGAAGTCCGCGAGGGTTTGGAA
CCAGGAGCGGCCGCGACTCGGGAGTACTCACGGACGAGGAGCGCCACCAC
CAAGGCTGGACGCCGCGTGGGAGCACCAGGGGAAGGATCATTTCGGGCTT
CCCCCGGCGCCCGCTCCTCCCCCATTACCTCCACCCCGAACGGTTACTCC
AGTCCACGCCGGAGAGAGGGGAAACCTATTTTCTCTGTCCTCTGGAGGGC
GGGGAACCGTTAGCCGAGCCTCGTTGGCGCTCGATAAACACGACGTCGGG
ATTGCCGGGACGGAGATCGTTGCCGTTGACGAGGCTGATGCTTCTGCCGC
CATTGCTGCTGCTGCTGCTGCAGGTGAGTTACCCGCAACGGCATCGCAGT
CGCCGACAGTTCCCAGCCCTTTCCTGGACGTTTTGAGTGCGAGCGGTGAC
GGCATGAGTTTGTTGTCTTCCAAAAGTGGTCGTCCTTGGCGAGAAGCGAC
TGGTAGCGGCTTCGAAGGCGGCCGCGAACTGGAGGGTGAGACCGACGAGG
TGGAGGCGGCTGCCGAGGAAGAGTTGACGTCGTGGGGGGCCAGCCCTGGG
AGGCGTTTCGAGAACCGTGGAGACCATCGACGGCGGGGAGGA
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