mRNA_F-distichus_contig10317.284.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10317.284.1
Unique NamemRNA_F-distichus_contig10317.284.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A6H5KP75_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP75_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 7.020e-31
Identity = 67/122 (54.92%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNS-VGDDPGETEELVEIDLGTNVIAVVPEAPGAGIDFVTISPTPAP 363
            N  G+LGLGD  +RG   G+MGDNLPAV L FG   G VSNV +G   +HTCVSG +GG+ CFG N+ G+LG GT+ + +GD+PGE   L  + LGT+ +A V  APG G+   TISPTPAP
Sbjct:  424 NSVGTLGLGDVLNRGAEPGEMGDNLPAVDLDFGTGTGAVSNVFAGR--FHTCVSGTEGGLVCFGLNSGGQLGAGTDETNIGDEPGEVAALSSVSLGTDEVAAVIAAPGEGLALKTISPTPAP 543          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: D7FP43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP43_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.230e-28
Identity = 60/111 (54.05%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNS-VGDDPGETEELVEIDLGTNVIAVVPEAPGAGI 330
            N  GSLGLGD+ +RG+  G+MGDNLP V L+FG   G  SNV +G   +HTCVSG +GG+ACFG N  G+LG G++ + +GD+PGE +EL  IDLG   +  VP+APG G+
Sbjct:  343 NSVGSLGLGDSLNRGLGPGEMGDNLPTVGLSFGPGLGAASNVFAGR--FHTCVSGAEGGLACFGLNAGGQLGSGSDETNIGDEPGEVKELTSIDLGAGEVVSVPDAPGLGV 451          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A6H5JFU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.020e-27
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGETEELVEIDLGTNVIAVVPEAP 318
            N  GSLGLGD   RG   G+MGDNL +V LTFG+ EG  SNV +GS  +H+CV+G +GG+ACFG N  G+LG GT+ ++GD+PGE E L  +DLG     V P +P
Sbjct:  358 NSLGSLGLGDAIPRGTGPGEMGDNLESVPLTFGDGEGAASNVFAGS--FHSCVTGSEGGLACFGYNILGQLGAGTSETIGDEPGEVEALASVDLGERATVVAPVSP 461          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A812SWJ0_9DINO (Herc4 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SWJ0_9DINO)

HSP 1 Score: 71.6 bits (174), Expect = 1.130e-11
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGET-EELVEIDLGTNVIAV 303
            N  G LGLG T DRG    +MGD LPAV+L  G +   V+     + SYHTC   + G + C+G N+YG LG+GT +++GD   E  + L  +  GT   AV
Sbjct:  163 NNYGQLGLGTTDDRGDGSSEMGDYLPAVALGTGRSAVEVT-----AGSYHTCARLDDGSVKCWGSNSYGVLGLGTTDNMGDGSNEMGDHLPLVAFGTGRSAV 259          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A0K1EC39_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EC39_CHOCO)

HSP 1 Score: 69.3 bits (168), Expect = 6.510e-11
Identity = 48/105 (45.71%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   10 GSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGET-EELVEIDLGTNVIAVVPEAPG 321
            G LGLGD   RG   G+MGD+LPAVSL  GE    V  +A+GS  +H C     G + C+G N  G LG+G     G D G   E L  +DLGT V AV   A G
Sbjct:   93 GQLGLGDAVPRGDDPGEMGDDLPAVSLGTGET---VEALAAGS--FHHCALLRGGRVKCWGGNASGSLGLGDGEGRGLDVGSMGENLPTVDLGTGVTAVALVAGG 192          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A7C1YL65_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YL65_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 6.820e-11
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGET-EELVEIDLG 285
            N NG LG G T D G   G+MG+NLP + L  G     ++   S     HTC   +   + C+G N+YG+LG GT + +GD+PGE  + L  +DLG
Sbjct:  191 NLNGGLGQGHTDDIGDNPGEMGNNLPPIDLGAGRTATAITAGDS-----HTCALLDNSTVKCWGDNSYGQLGQGTTDDIGDNPGEMGDNLPPVDLG 281          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A8J4GU39_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GU39_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 7.280e-11
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIA-CFGPNTYGELGVGTNNSVGDDPGET-EELVEIDLGTNVIA 300
            N+ G LGLGDTQDRG  +G+MG +LP VSL  G    NV+ VA+G   +HTC     GGI  C+G N +G+LG+G     G   G+  + L  +DLG+ + A
Sbjct:  546 NKEGQLGLGDTQDRGDQKGEMGADLPIVSLGRGL---NVTAVAAGC--FHTCALLAPGGIVKCWGLNDHGQLGLGDKRDRGGMTGDMGDALPAVDLGSGLRA 642          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A017T414_9DELT (Uncharacterized protein n=1 Tax=Chondromyces apiculatus DSM 436 TaxID=1192034 RepID=A0A017T414_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 1.260e-10
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGETEELVEIDLGTNVIAV 303
            NE G LGLGDTQ+RG    QMGDNLPAV L      GNV+  A GS    TC       + C+G N  G+LG+G   + GD PG+        +G N+ A+
Sbjct:  492 NEQGVLGLGDTQNRGTAPNQMGDNLPAVDL----GPGNVAT-AIGSAYLQTCAVIHGNSLKCWGYNNRGQLGLGDTMARGDQPGQ--------MGANLPAI 579          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A848LYD2_9DELT (Uncharacterized protein n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LYD2_9DELT)

HSP 1 Score: 67.8 bits (164), Expect = 2.240e-10
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGETEELVEIDL 282
            N +G LGLGDT  RG   G++GD LPAV L  G        +A  + + HTC   +   + C+G N  G+LGVG+  + GD PGE  +   IDL
Sbjct:  365 NAHGQLGLGDTDTRGDTPGELGDALPAVDLGKGRTA-----IALAAGAEHTCALLDNATVKCWGRNDSGQLGVGSMEARGDQPGELGDKERIDL 453          
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Match: A0A061R011_9CHLO (Rcc1 repeat-containing protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R011_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 4.160e-10
Identity = 42/101 (41.58%), Postives = 51/101 (50.50%), Query Frame = 1
Query:    1 NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYHTCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGETEELVEIDLGTNVIAV 303
            N  G LGLGDT  RG   G MGD LP V L  G        V  G   +HTC     G + C+G   +G LG G+ NSVGD PGE        +G +++AV
Sbjct:  189 NSFGQLGLGDTAPRGTAPGSMGDVLPKVELPSGRV---AHAVVCGY--HHTCAXLNDGNLVCWGLGRFGRLGTGSENSVGDSPGE--------MGDSLVAV 276          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10317.284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP75_9PHAE7.020e-3154.92Protein kinase domain-containing protein n=2 Tax=E... [more]
D7FP43_ECTSI2.230e-2854.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFU1_9PHAE5.020e-2753.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812SWJ0_9DINO1.130e-1142.16Herc4 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A0K1EC39_CHOCO6.510e-1145.71Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
A0A7C1YL65_9ACTN6.820e-1140.63Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A8J4GU39_9CHLO7.280e-1145.10Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A017T414_9DELT1.260e-1043.56Uncharacterized protein n=1 Tax=Chondromyces apicu... [more]
A0A848LYD2_9DELT2.240e-1041.49Uncharacterized protein n=1 Tax=Pyxidicoccus falla... [more]
A0A061R011_9CHLO4.160e-1041.58Rcc1 repeat-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10317contigF-distichus_contig10317:5299..6815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D7FZX4
Preferred nameRCCD1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-22_003030.3
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size454
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10317.284.1prot_F-distichus_contig10317.284.1Fucus distichus monoicouspolypeptideF-distichus_contig10317 5299..6815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.7097187-CDS-F-distichus_contig10317:5298..53401622928949.7097187-CDS-F-distichus_contig10317:5298..5340Fucus distichus monoicousCDSF-distichus_contig10317 5299..5340 -
1690885079.128125-CDS-F-distichus_contig10317:5298..53401690885079.128125-CDS-F-distichus_contig10317:5298..5340Fucus distichus monoicousCDSF-distichus_contig10317 5299..5340 -
1622928949.7224166-CDS-F-distichus_contig10317:5992..61931622928949.7224166-CDS-F-distichus_contig10317:5992..6193Fucus distichus monoicousCDSF-distichus_contig10317 5993..6193 -
1690885079.1419802-CDS-F-distichus_contig10317:5992..61931690885079.1419802-CDS-F-distichus_contig10317:5992..6193Fucus distichus monoicousCDSF-distichus_contig10317 5993..6193 -
1622928949.7346141-CDS-F-distichus_contig10317:6605..68151622928949.7346141-CDS-F-distichus_contig10317:6605..6815Fucus distichus monoicousCDSF-distichus_contig10317 6606..6815 -
1690885079.1536367-CDS-F-distichus_contig10317:6605..68151690885079.1536367-CDS-F-distichus_contig10317:6605..6815Fucus distichus monoicousCDSF-distichus_contig10317 6606..6815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10317.284.1

>prot_F-distichus_contig10317.284.1 ID=prot_F-distichus_contig10317.284.1|Name=mRNA_F-distichus_contig10317.284.1|organism=Fucus distichus monoicous|type=polypeptide|length=151bp
NENGSLGLGDTQDRGIMEGQMGDNLPAVSLTFGEAEGNVSNVASGSVSYH
TCVSGEQGGIACFGPNTYGELGVGTNNSVGDDPGETEELVEIDLGTNVIA
VVPEAPGAGIDFVTISPTPAPTRSPTPAPTLSPTTAAPTASPVDPTLYPV
G
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mRNA from alignment at F-distichus_contig10317:5299..6815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10317.284.1 ID=mRNA_F-distichus_contig10317.284.1|Name=mRNA_F-distichus_contig10317.284.1|organism=Fucus distichus monoicous|type=mRNA|length=1517bp|location=Sequence derived from alignment at F-distichus_contig10317:5299..6815- (Fucus distichus monoicous)
AATGAAAATGGAAGCCTGGGGCTCGGCGACACGCAGGATCGAGGCATCAT GGAGGGGCAAATGGGGGACAACCTGCCCGCGGTCAGTCTGACCTTTGGCG AGGCCGAAGGGAATGTTTCGAACGTGGCATCGGGGAGTGTATCGTATCAC ACATGCGTCTCCGGGGAGCAGGGCGGAATCGCGTGTTTTGGGCCGAACAC ATATGGAGAGGTAAGGCCTCGCTTGTTTTGTGTAAGTTGCGGAGTTGTTA TTAATGCTCTTTATTAAGGATAGTCACTGGATAACCTGGTCGCGTTCATT TTCTAGTTATATTACATACCTTAACGAAAATGCCATCTCTTCGCTTATCT GGCCGTATTTTCTATTACACTGGGTTTTTCAGTTTCAACACACTTTCCTG AACATTTTTTTATATATTAATCTTTACGGCCTCCTAATGGATATTCCTCC GGGAGGATTGTACAGCTTACAAATCGAGGGTCTGTGCGACAACCCAGCTT ACAAATCAATAGCACTTCGTGGTGAATCAATCGCGTTTACCTCCGTCGAA CCCTCATTCGTAATCCGCCGCATCTCTTGCGGAAACCCCGGGATGTTCTG GCCTGGTCCCGCGGCGCTATAGCTGGGAGTAGGCACTAATAACAGCGTGG GCGATGACCCGGGAGAAACTGAAGAATTGGTCGAGATCGATCTCGGCACC AATGTGATTGCAGTAGTTCCGGAGGCTCCGGGAGCAGGAATTGATTTCGT CACGATTTCTCCGACGCCCGCTCCGACACGATCGCCAACCCCTGCTCCCA CGTTATCCCCTACTACAGCAGCGGTGAGTTTTCAACTAATTGTTTTCTGC ATGGGCGTTTTTGCCACTGGTTTCTGCGTTTTGAGTGTACAATATTGAGT CGTTCGCTTGCCCCTTCGTGTCGATTTTTCTTTTGAATATGTCTGTGTGT GTGTGTTTATTTTTAGTTTTTTACACTTACTTTTTTTTGTGATTCGACTT TTTTTTAGAGTTAGTGTTCTACTTTTGAGGCTTGTGTTATGTCTTCGTGT TTATAGATAGCCCTGTGGTTAAGGTTTTTGTGTGTGTTTTGAGGATTTAT GTATCTCGACAGGGGTCAGATTACAGTTTCTTGCGTGTTTTTGAGGTCAG CGTGGTTTGAGGAGACTTGTTTTTGCAGTGTTAATTGTATCACAGCTTTT GTTTCTGTTTTGCGTCTTTTTCGTTTTCACTTGTCTGTTTGCGTCGATCG TTTTTTGTTCTTTCTACAGTAGTATTCCTTTTTTCCCCAACTTTCCCCTC CTTGCCTGTACACGTCTTGTCTAACTTTTTACTCGCGCTTGACATATGCC CAAAAGTGTGTGCTGAACTCCCACAAAATTTAACATGTAATCCCATCACT TTTCGGGGGGGGGGGGGTTCTGTGTTCTGTTTTTTTCGTTTTCCCTCTTC TCTAATTCGGCTCGAAAATTTGTAGCCGACGGCGTCTCCTGTGGATCCCA CCCTATATCCTGTGGGC
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Coding sequence (CDS) from alignment at F-distichus_contig10317:5299..6815-

>mRNA_F-distichus_contig10317.284.1 ID=mRNA_F-distichus_contig10317.284.1|Name=mRNA_F-distichus_contig10317.284.1|organism=Fucus distichus monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at F-distichus_contig10317:5299..6815- (Fucus distichus monoicous)
AATGAAAATGGAAGCCTGGGGCTCGGCGACACGCAGGATCGAGGCATCAT
GGAGGGGCAAATGGGGGACAACCTGCCCGCGGTCAGTCTGACCTTTGGCG
AGGCCGAAGGGAATGTTTCGAACGTGGCATCGGGGAGTGTATCGTATCAC
ACATGCGTCTCCGGGGAGCAGGGCGGAATCGCGTGTTTTGGGCCGAACAC
ATATGGAGAGAATGAAAATGGAAGCCTGGGGCTCGGCGACACGCAGGATC
GAGGCATCATGGAGGGGCAAATGGGGGACAACCTGCCCGCGGTCAGTCTG
ACCTTTGGCGAGGCCGAAGGGAATGTTTCGAACGTGGCATCGGGGAGTGT
ATCGTATCACACATGCGTCTCCGGGGAGCAGGGCGGAATCGCGTGTTTTG
GGCCGAACACATATGGAGAGCTGGGAGTAGGCACTAATAACAGCGTGGGC
GATGACCCGGGAGAAACTGAAGAATTGGTCGAGATCGATCTCGGCACCAA
TGTGATTGCAGTAGTTCCGGAGGCTCCGGGAGCAGGAATTGATTTCGTCA
CGATTTCTCCGACGCCCGCTCCGACACGATCGCCAACCCCTGCTCCCACG
TTATCCCCTACTACAGCAGCGCTGGGAGTAGGCACTAATAACAGCGTGGG
CGATGACCCGGGAGAAACTGAAGAATTGGTCGAGATCGATCTCGGCACCA
ATGTGATTGCAGTAGTTCCGGAGGCTCCGGGAGCAGGAATTGATTTCGTC
ACGATTTCTCCGACGCCCGCTCCGACACGATCGCCAACCCCTGCTCCCAC
GTTATCCCCTACTACAGCAGCGCCGACGGCGTCTCCTGTGGATCCCACCC
TATATCCTGTGGGCCCGACGGCGTCTCCTGTGGATCCCACCCTATATCCT
GTGGGC
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