mRNA_F-distichus_contig103109.278.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103109.278.1
Unique NamemRNA_F-distichus_contig103109.278.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5L9A9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9A9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.680e-23
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S LWAS C+NRSA+ A  GW+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ L+ +V W
Sbjct:   32 LWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVW 127
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5JGN6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 5.060e-23
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S LWASAC+NRSA+ A  GW+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ L+ +V W
Sbjct:  125 LWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGVMRVKRATKADIQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVW 220
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.420e-23
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S LWAS C+NRSA+ A  GW+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ L+ +V W
Sbjct:  249 LWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVW 344
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5JS38_9PHAE (Integrase catalytic domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS38_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.560e-23
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S LWASAC+NRSA+ A  GW+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ L+ +V W
Sbjct:  291 LWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVW 386
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.970e-23
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S LWAS C+NRSA+ A  GW+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ L+ +V W
Sbjct: 1220 LWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVW 1315
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5JL11_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL11_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.070e-22
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S +WAS C+NRSA++A   W+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ LS +V W
Sbjct:  249 LWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNVVW 344
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5K0N9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.240e-22
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S LWASAC+NRSA  A  GW+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ L+ +V W
Sbjct:  198 LWLASALWASACFNRSAPKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRVTKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVW 293
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5JA19_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA19_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.790e-22
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S LWASAC+NRSA+ A  GW+SP +  +G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ L+ +V W
Sbjct:  168 LWLASALWASACFNRSATKANLGWMSPFEALFGRKPPLTVIPFFQEGMMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNVVW 263
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5L7I6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.250e-22
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S +WAS C+NRSA++A   W+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ LS +V W
Sbjct:  184 LWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNVVW 279
[Close]
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Match: A0A6H5KIN4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.340e-22
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    7 LWMESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVPRQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW 294
            LW+ S +WAS+C+NRSA++A   W+SP + F+G +PPL ++PFFQ    RV R  K D ++  C++L+   NH      +L A+TG++ LS +V W
Sbjct:  525 LWLASAIWASSCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNVVW 620
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103109.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9A9_9PHAE3.680e-2343.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGN6_9PHAE5.060e-2344.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JD95_9PHAE9.420e-2343.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JS38_9PHAE9.560e-2344.79Integrase catalytic domain-containing protein n=4 ... [more]
A0A6H5K3I1_9PHAE9.970e-2343.75Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JL11_9PHAE1.070e-2242.71Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K0N9_9PHAE1.240e-2244.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JA19_9PHAE1.790e-2243.75Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L7I6_9PHAE3.250e-2242.71Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KIN4_9PHAE3.340e-2242.71Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103109contigF-distichus_contig103109:354..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.247631-UTR-F-distichus_contig103109:353..3651622928949.247631-UTR-F-distichus_contig103109:353..365Fucus distichus monoicousUTRF-distichus_contig103109 354..365 +
1690885078.8277447-UTR-F-distichus_contig103109:353..3651690885078.8277447-UTR-F-distichus_contig103109:353..365Fucus distichus monoicousUTRF-distichus_contig103109 354..365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.264635-CDS-F-distichus_contig103109:365..6471622928949.264635-CDS-F-distichus_contig103109:365..647Fucus distichus monoicousCDSF-distichus_contig103109 366..647 +
1690885078.8466043-CDS-F-distichus_contig103109:365..6471690885078.8466043-CDS-F-distichus_contig103109:365..647Fucus distichus monoicousCDSF-distichus_contig103109 366..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103109.278.1prot_F-distichus_contig103109.278.1Fucus distichus monoicouspolypeptideF-distichus_contig103109 366..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103109.278.1

>prot_F-distichus_contig103109.278.1 ID=prot_F-distichus_contig103109.278.1|Name=mRNA_F-distichus_contig103109.278.1|organism=Fucus distichus monoicous|type=polypeptide|length=94bp
MESLLWASACYNRSASAAKDGWLSPHKIFYGNRPPLPLLPFFQSAYHRVP
RQHKNDPRARLCYFLNFGYNHGHDCYKLLDAETGKVVLSRDVTW
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mRNA from alignment at F-distichus_contig103109:354..647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103109.278.1 ID=mRNA_F-distichus_contig103109.278.1|Name=mRNA_F-distichus_contig103109.278.1|organism=Fucus distichus monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at F-distichus_contig103109:354..647+ (Fucus distichus monoicous)
ACGAGTTTATGGATGGAGTCACTGCTGTGGGCCTCGGCATGCTATAACCG
GTCTGCTAGCGCGGCAAAGGACGGATGGCTTTCCCCCCATAAGATTTTCT
ATGGGAACCGCCCGCCGCTGCCGCTGCTACCATTTTTCCAGTCGGCCTAC
CACCGAGTGCCCCGACAACATAAAAATGATCCCCGTGCCCGCCTGTGCTA
TTTCCTGAATTTTGGCTATAATCACGGGCACGATTGCTACAAACTGCTGG
ACGCGGAGACGGGAAAGGTCGTACTCTCGCGTGACGTTACGTGG
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Coding sequence (CDS) from alignment at F-distichus_contig103109:354..647+

>mRNA_F-distichus_contig103109.278.1 ID=mRNA_F-distichus_contig103109.278.1|Name=mRNA_F-distichus_contig103109.278.1|organism=Fucus distichus monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at F-distichus_contig103109:354..647+ (Fucus distichus monoicous)
ATGGAGTCACTGCTGTGGGCCTCGGCATGCTATAACCGGTCTGCTAGCGC
GGCAAAGGACGGATGGCTTTCCCCCCATAAGATTTTCTATGGGAACCGCC
CGCCGCTGCCGCTGCTACCATTTTTCCAGTCGGCCTACCACCGAGTGCCC
CGACAACATAAAAATGATCCCCGTGCCCGCCTGTGCTATTTCCTGAATTT
TGGCTATAATCACGGGCACGATTGCTACAAACTGCTGGACGCGGAGACGG
GAAAGGTCGTACTCTCGCGTGACGTTACGTGGATGGAGTCACTGCTGTGG
GCCTCGGCATGCTATAACCGGTCTGCTAGCGCGGCAAAGGACGGATGGCT
TTCCCCCCATAAGATTTTCTATGGGAACCGCCCGCCGCTGCCGCTGCTAC
CATTTTTCCAGTCGGCCTACCACCGAGTGCCCCGACAACATAAAAATGAT
CCCCGTGCCCGCCTGTGCTATTTCCTGAATTTTGGCTATAATCACGGGCA
CGATTGCTACAAACTGCTGGACGCGGAGACGGGAAAGGTCGTACTCTCGC
GTGACGTTACGTGG
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