mRNA_F-distichus_contig1031.275.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1031.275.1
Unique NamemRNA_F-distichus_contig1031.275.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig1031.275.1 vs. uniprot
Match: D7FYL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL7_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.640e-64
Identity = 121/226 (53.54%), Postives = 167/226 (73.89%), Query Frame = 3
Query:   66 ENAILKKRIKDLTKAAAAKDENLHAIMSQLKALQLEFERVKKRAEFDLVARGGQTQKLAFLEHTVSTLRRDLQTNLERRQNLEGKLSILKRSWQNERSLRLQDLHRQDVVSSQKKNAKEAAECTERKWLEAEQQVEILKNKLESRVCELDVQRQINVTQGNEVRAQAAEIELHRADVLRLKRMLYCRQGEISSEKNTSANLRRELLRVRREFISNTSNRSEQQSAF 743
            +N  L+ +++   +A   K+E L  I  +L A + E ER KK A+FDLVA  G+T+KL  LEHTV+TLR DL TN+ERRQ +E K++ L+RSWQNERSLRLQDLHR D +SS  K+A++ AE  E +WLE+E++ ++L+ K+E ++ EL+ Q ++N  Q  E+ AQAAEIELHR ++  LK++L  R+GEIS+  +T+ +LRREL RVRREFI +TSNRSEQQSA 
Sbjct:   31 QNEALEDQVQAFQEALEVKEERLRTIAGELTAARRELERAKKSAKFDLVAAEGRTKKLGILEHTVATLRHDLHTNVERRQKVEEKVATLERSWQNERSLRLQDLHRHDAMSSDTKHAEKVAEDVEGRWLESEKRAQVLEVKVEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQVLLAREGEISTGCSTATDLRRELSRVRREFIMSTSNRSEQQSAL 256          
BLAST of mRNA_F-distichus_contig1031.275.1 vs. uniprot
Match: A0A6H5JZF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 6.120e-36
Identity = 96/243 (39.51%), Postives = 135/243 (55.56%), Query Frame = 3
Query:   24 TGGLKEGGLEEALE---ENAILKKRIKDLTKAAAAKDENLHAIMSQLKALQLEFERVKKRAEFDLVARGGQTQKLAFLEHTVSTLRRDLQTNLERRQNLEGKLSILKRSWQNERSLRLQDLHRQDVVSSQKKNAKEAAECTERKWLEAEQQVEILKNKLESRVCELDVQRQINVTQGNEVRAQAAEIELHRADVLRLKRMLYCRQGEISSEKNTSANLRRELLRVRREFISNTSNRSEQQSAF 743
            T G ++GG+   L    +N  L+ +++   +A   K+E L  I   L A + E ER KK A+FDLVA  G+T+KL  LEHTV+TL  DLQTN+ERR                                                WLE+E++ ++L+ K+E ++ EL+ Q ++N  Q  E+ AQAAEIE HR ++L LK+     +GEIS+ ++T+ +LRREL RVRREFI +TSNRSEQQSA 
Sbjct:   14 TPGNEDGGVATDLHVALQNEALENQVQAFQEALEVKEERLRTITGMLTATRKELERAKKSAKFDLVAAEGRTKKLGILEHTVATLHHDLQTNVERR------------------------------------------------WLESEKRAQVLEEKVEQKIHELESQSRVNAAQAGEIEAQAAEIEFHRKEILDLKQ-----EGEISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSAL 203          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1031.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYL7_ECTSI3.640e-6453.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZF3_9PHAE6.120e-3639.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1031contigF-distichus_contig1031:15612..19788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1312
Cds size984
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.7806544-UTR-F-distichus_contig1031:15611..156161622928948.7806544-UTR-F-distichus_contig1031:15611..15616Fucus distichus monoicousUTRF-distichus_contig1031 15612..15616 +
1690885078.6177564-UTR-F-distichus_contig1031:15611..156161690885078.6177564-UTR-F-distichus_contig1031:15611..15616Fucus distichus monoicousUTRF-distichus_contig1031 15612..15616 +
1622928948.9212685-UTR-F-distichus_contig1031:19465..197881622928948.9212685-UTR-F-distichus_contig1031:19465..19788Fucus distichus monoicousUTRF-distichus_contig1031 19466..19788 +
1690885078.7158797-UTR-F-distichus_contig1031:19465..197881690885078.7158797-UTR-F-distichus_contig1031:19465..19788Fucus distichus monoicousUTRF-distichus_contig1031 19466..19788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.7945774-CDS-F-distichus_contig1031:15616..156821622928948.7945774-CDS-F-distichus_contig1031:15616..15682Fucus distichus monoicousCDSF-distichus_contig1031 15617..15682 +
1690885078.6275454-CDS-F-distichus_contig1031:15616..156821690885078.6275454-CDS-F-distichus_contig1031:15616..15682Fucus distichus monoicousCDSF-distichus_contig1031 15617..15682 +
1622928948.8176208-CDS-F-distichus_contig1031:16207..164371622928948.8176208-CDS-F-distichus_contig1031:16207..16437Fucus distichus monoicousCDSF-distichus_contig1031 16208..16437 +
1690885078.6378-CDS-F-distichus_contig1031:16207..164371690885078.6378-CDS-F-distichus_contig1031:16207..16437Fucus distichus monoicousCDSF-distichus_contig1031 16208..16437 +
1622928948.8372948-CDS-F-distichus_contig1031:17147..172171622928948.8372948-CDS-F-distichus_contig1031:17147..17217Fucus distichus monoicousCDSF-distichus_contig1031 17148..17217 +
1690885078.6488078-CDS-F-distichus_contig1031:17147..172171690885078.6488078-CDS-F-distichus_contig1031:17147..17217Fucus distichus monoicousCDSF-distichus_contig1031 17148..17217 +
1622928948.8560016-CDS-F-distichus_contig1031:17613..177301622928948.8560016-CDS-F-distichus_contig1031:17613..17730Fucus distichus monoicousCDSF-distichus_contig1031 17614..17730 +
1690885078.6621232-CDS-F-distichus_contig1031:17613..177301690885078.6621232-CDS-F-distichus_contig1031:17613..17730Fucus distichus monoicousCDSF-distichus_contig1031 17614..17730 +
1622928948.8686748-CDS-F-distichus_contig1031:18031..181531622928948.8686748-CDS-F-distichus_contig1031:18031..18153Fucus distichus monoicousCDSF-distichus_contig1031 18032..18153 +
1690885078.6846092-CDS-F-distichus_contig1031:18031..181531690885078.6846092-CDS-F-distichus_contig1031:18031..18153Fucus distichus monoicousCDSF-distichus_contig1031 18032..18153 +
1622928948.8827074-CDS-F-distichus_contig1031:18528..187251622928948.8827074-CDS-F-distichus_contig1031:18528..18725Fucus distichus monoicousCDSF-distichus_contig1031 18529..18725 +
1690885078.6933367-CDS-F-distichus_contig1031:18528..187251690885078.6933367-CDS-F-distichus_contig1031:18528..18725Fucus distichus monoicousCDSF-distichus_contig1031 18529..18725 +
1622928948.9013011-CDS-F-distichus_contig1031:19283..194651622928948.9013011-CDS-F-distichus_contig1031:19283..19465Fucus distichus monoicousCDSF-distichus_contig1031 19284..19465 +
1690885078.7054102-CDS-F-distichus_contig1031:19283..194651690885078.7054102-CDS-F-distichus_contig1031:19283..19465Fucus distichus monoicousCDSF-distichus_contig1031 19284..19465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1031.275.1prot_F-distichus_contig1031.275.1Fucus distichus monoicouspolypeptideF-distichus_contig1031 15617..19465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1031.275.1

>prot_F-distichus_contig1031.275.1 ID=prot_F-distichus_contig1031.275.1|Name=mRNA_F-distichus_contig1031.275.1|organism=Fucus distichus monoicous|type=polypeptide|length=328bp
MDAMDLTGGLKEGGLEEALEENAILKKRIKDLTKAAAAKDENLHAIMSQL
KALQLEFERVKKRAEFDLVARGGQTQKLAFLEHTVSTLRRDLQTNLERRQ
NLEGKLSILKRSWQNERSLRLQDLHRQDVVSSQKKNAKEAAECTERKWLE
AEQQVEILKNKLESRVCELDVQRQINVTQGNEVRAQAAEIELHRADVLRL
KRMLYCRQGEISSEKNTSANLRRELLRVRREFISNTSNRSEQQSAFERVA
VNDGNRVAAPAIDRSKQGRGCRVKARRNASANSAASTLFVPGSLHLGMGL
GLKKAPAWNPPAGSAKVILESIMEKHR*
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mRNA from alignment at F-distichus_contig1031:15612..19788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1031.275.1 ID=mRNA_F-distichus_contig1031.275.1|Name=mRNA_F-distichus_contig1031.275.1|organism=Fucus distichus monoicous|type=mRNA|length=4177bp|location=Sequence derived from alignment at F-distichus_contig1031:15612..19788+ (Fucus distichus monoicous)
ATGTCATGGATGCCATGGATCTTACGGGTGGTCTGAAGGAGGGAGGGCTC GAAGAAGCGCTGGAAGAAAATGTACAGTACTACCTACCACTACTGGAGAA AGAAGCGAAGCACCTCACTCAACGTCAAAATATATGTGTTGTGTGTGTGT GTTCGTGTGTTTTGTACAAGAACAGAAAATACTTGTAAAAGTACAAAGCC TTTTTCAGTCTGCGGGTCGAAGTGGAACCTATTCCTCAAGGAGGCACATA AACTGTAGTGTGGCAGTATGAATGTGGCCGCACCAACATCTTCGAATGAA ATCGCGTGGTCGCCACGTCTCCCGACATCCACTACTATTACTATGCACAA CACTCTTGCGTCTAATCCAGTCAATCCAGATAACCCAGCTAATCCAGCTA ATCCAGGTCAGCTACGCTCTCCCACTCGATCGAATTATTTGACGCAGCGA GTGAGTCACGTAGTACTCGGATGCTGGCCTCTTAAAGGTTTACCTCTCTT TACAAACGGTAATATTAAAAAAATAGGGCAAAGCTAACCAACGAAAACAT GTATCTCACTGAGACGTTGAACTTCTTTGTTCGGGATGGTGGGTAGGCCA TCCTCAAGAAGCGCATCAAGGATTTGACGAAGGCTGCAGCAGCCAAGGAT GAAAATTTGCATGCAATCATGTCTCAACTGAAGGCACTGCAACTGGAGTT CGAGAGAGTAAAGAAAAGAGCCGAGTTCGACCTCGTCGCTCGAGGGGGGC AAACACAGAAGCTAGCTTTTTTGGAGCATACCGTATCAACTTTGCGCCGG GATCTACAGACCAACTTGGAGCGCCGGTGCGACCTTCAGAATTTGGATGA CGAAGAACGCTGCCGCCGCCGTGACGGCAAAAGCAAAATACATGACATAC GAGTAGTGTATTGCAATCTCGGGGCATATCTCTACTATGTCAGCCCCTAA ACTAAAGGTTAGGTATATATTAGGTAAAATCATTTTATATTATCGATTCT AGGGCTGTGGGAGTACATTCTGCACAACACATAACACATGATGACATGTG CATACGGTACATTTATGCATGCTTCCAACCCGATATACTCTATAAGGTAT ACTGTATCGGGTATAGTCTAGACCCGGTGACACTACTTTTGGAGTCTTTG AAGGGGAGGTTTTGTGTGTAATTGGATATGTTATTAATAGTGTTGGCATA CTGCATACTGGTCGTACAGTACATCATACATAACATGCTCTAATCTTAAT CCTAGCATGAAGAATCAATAATAATAGTCTATCATACCCATCGTAAATAA TTTAGAACTCTCCTCCTCTTGTGTCTTGATACATCATGTATATATAATAA TGTATATATACCATGCAGCATGCACTCGGAAGGGGGGGGGGGTGTATTGT ATTACATACACTGTTGTTGTCAGGCGGATGATTCACCGTGCGCCTCTCCT TGTTACGTCGCATTAAAACATGAAAACATCAACATCAAAACATGGAAACA CCAAAACAAAACATTAACGGTTTCTTGTACACGTAGGCAGAATTTGGAGG GAAAATTGTCTATCCTGAAACGCTCGTGGCAGAACGAGCGCAGCCTCCGG TTACAGGTCAGGTGCAGTTCGTCCCTGTCTTACGGGCCCGACTTAAAACA TCTACTCTGTGTTGTACAGTACAGTACTGCTATATCATTAGTATTCAAGT TGGTTTATTGATATAAACACGTCCAGTCCCCGTTACAGCAGTATTAAGCG TGCCGGTATAATGTACCTGGTACAGTTAACTATTTAATAGTAGACTTTCA CTAAATATGAATAACACATGCATTTATCATGTACTCAAAATGTGTTTGTT TTGTTTTTGTCTTCTGGTGTCCCTGCATGGCGATTAATGGAAGTGTACAG CATAGCGATGGGCTTCTCCCCGATATTATACTGTTGACCCAATGTTAGCT CGTCAAGACCCTTGCCTTGTCCGTTCTACCAACTCTGTGACTTTGTCGCC AGGACTTGCATCGACAAGATGTTGTATCCTCTCAAAAAAAGAATGCGAAG GAGGCTGCCGAGTGCACCGAACGAAAGTGGCTCGAAGCTGAACAACAAGT GGAGATCCTAAAAAATAAGGTGAGGCCTACATACAGTACCGGTACAGTAA AGACTTTTTTTTAACATTTCGAGTACTCATTTGCTACATATTATATACAT TGTCCTGTTTTCAGCTATAATGCTACAGAGACCCGGAGCTGAGATGGGGA CTAAAGGCAATGTTGGTATTAATATCTCGCAGTGCCAAAATTTTGGATCC ATCAATTTAAGCCTCGGCTGAGCTTGTATACTAGGATCCGGAGCGAATTG CACCGGATATTTCCTATGTTTCCGCACATCCTAACGGCCATATTAACTCG ACGAACGGACGAACGGACAGCTGGAGTCGCGCGTTTGCGAGCTCGATGTC CAGCGTCAGATCAACGTCACCCAGGGGAATGAGGTTCGTGCTCAAGCGGC AGAGATCGAGCTGCATCGGGCAGATGTTCTCCGTCTGAAACGGTGCGCAC GTTCCTGCCACGTAGCCGAAGACTAGTACTGGCATTGGTACATGTTCCTG TTGCGTCTTTCAGGGATTGTGGTCCAGAGTGCATCCGGGTCGCGTCAAGT TGATTTGTACAGTACTCGTACAATACTTTGGAGAGCTTGTACATCACACT ATACTAATCCGTATACACTAATGCGTACACTACTGCGTACACTACTGCGG TTTTGATAGGGCGTACACTAGCGGGTCTCGAAAATCGGCATGTTTTCTCG ACCAGAGTCGTAGTCGTAGTTGTAGTTCTAGTTGTTCAGGCGAGATCCAA GACATTGGAACAAGGTGCGAAAATATCTGCCTCGGCTAATCAACCTAAGC AACTCGGGCTCTGGCAGGATGCTCTACTGCCGACAAGGCGAGATATCGTC AGAAAAAAATACCTCCGCGAACTTACGACGGGAATTGTTGCGCGTCCGGA GAGAGTTTATCTCGAACACTTCCAACCGAAGCGAACAACAGAGCGCTTTC GAGAGGGTTGCAGTGAACGATGGAAATCGCGTTGCGGCACCAGCGATCGA TCGCTCTAAACAGGGTATGTCCACGGTATGCCGACAGGATCATCATGAAC GATCTAAACAATCCTAACAATTAATCCCGTACAAGTACAAGTATCAAGTA TCTCGTTTATTAATATGACGCATCGTTCTTGCAAGCGGAGGGAGGCTCAT CAAGAGGTCAAGAGGTCGTCCGCGCGGACGCTACACTAAATAGTACAAGT ATTAATATTATTATTATATTCCTGTCAAAAGTGAATTCTTCATTATTTGG CGATCGAAGAGCCCAACACCAGTACACTATTAATATCAATCCCGAGAGAC CACGAGCTTGCTCCCCAGGTCAGGTGCCTTAAGGGGCTGGTTTCCGGTGA CTCGTCAACGAGTTCGCATATAGAGGTGTCGCTACCGACACTCCCCCCTG AGAAATCCTGTTGTATGAACTCACGCCATTTATAATATAATCAATGGTCT TTTGGTCGAACATTTCCTAACCAACAACGTCAACAATCACACGCTGTGGC GAAAAGGTTGCACACCACCAACGACAGCGACGCATCAGTCTCGAGATGTC ATGCTGTGTTATGCTGCAGCAGGTAGGGGATGTCGGGTTAAGGCGCGTAG GAATGCTTCGGCCAATAGCGCTGCTTCGACTTTATTTGTGCCGGGATCAT TGCACCTTGGAATGGGTCTGGGTCTGAAGAAAGCACCGGCCTGGAATCCT CCTGCGGGATCCGCCAAAGTTATATTAGAGTCTATTATGGAGAAGCATCG ATGACGGTGAATCCTGACCAGGGAACTCTATGACGGAGAGAGGGAAGTTC AATCATAAGGCTGGTCAGAGACGAACCAGCACTGTGGTACGACAATGGTG GAGTCAACTGCAAAACGATCATTCAGGATCCTAAGCCAGGATGCAGGATT GGATACCCACGCAGCCGTGCTTGCACCAAAGGCTGTCATGTCTGGTTTTG ATAGTAATAGTTGGAGACCGTACAGTATGGGCAAGCGCGGCGAGTAAGCT TGTCTGGGAGTGAGGGCCCAAAATTGGCAGAAAAATATCAAAGTGATCAG AGTCAAAAGTTGAACAAACCATAAAAC
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Coding sequence (CDS) from alignment at F-distichus_contig1031:15612..19788+

>mRNA_F-distichus_contig1031.275.1 ID=mRNA_F-distichus_contig1031.275.1|Name=mRNA_F-distichus_contig1031.275.1|organism=Fucus distichus monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at F-distichus_contig1031:15612..19788+ (Fucus distichus monoicous)
ATGGATGCCATGGATCTTACGGGTGGTCTGAAGGAGGGAGGGCTCGAAGA
AGCGCTGGAAGAAAATATGGATGCCATGGATCTTACGGGTGGTCTGAAGG
AGGGAGGGCTCGAAGAAGCGCTGGAAGAAAATGCCATCCTCAAGAAGCGC
ATCAAGGATTTGACGAAGGCTGCAGCAGCCAAGGATGAAAATTTGCATGC
AATCATGTCTCAACTGAAGGCACTGCAACTGGAGTTCGAGAGAGTAAAGA
AAAGAGCCGAGTTCGACCTCGTCGCTCGAGGGGGGCAAACACAGAAGCTA
GCTTTTTTGGAGCATACCGTATCAACTTTGCGCCGGGATCTACAGACCAA
CTTGGAGCGCCGGCCATCCTCAAGAAGCGCATCAAGGATTTGACGAAGGC
TGCAGCAGCCAAGGATGAAAATTTGCATGCAATCATGTCTCAACTGAAGG
CACTGCAACTGGAGTTCGAGAGAGTAAAGAAAAGAGCCGAGTTCGACCTC
GTCGCTCGAGGGGGGCAAACACAGAAGCTAGCTTTTTTGGAGCATACCGT
ATCAACTTTGCGCCGGGATCTACAGACCAACTTGGAGCGCCGGCAGAATT
TGGAGGGAAAATTGTCTATCCTGAAACGCTCGTGGCAGAACGAGCGCAGC
CTCCGGTTACAGGCAGAATTTGGAGGGAAAATTGTCTATCCTGAAACGCT
CGTGGCAGAACGAGCGCAGCCTCCGGTTACAGGACTTGCATCGACAAGAT
GTTGTATCCTCTCAAAAAAAGAATGCGAAGGAGGCTGCCGAGTGCACCGA
ACGAAAGTGGCTCGAAGCTGAACAACAAGTGGAGATCCTAAAAAATAAGG
ACTTGCATCGACAAGATGTTGTATCCTCTCAAAAAAAGAATGCGAAGGAG
GCTGCCGAGTGCACCGAACGAAAGTGGCTCGAAGCTGAACAACAAGTGGA
GATCCTAAAAAATAAGCTGGAGTCGCGCGTTTGCGAGCTCGATGTCCAGC
GTCAGATCAACGTCACCCAGGGGAATGAGGTTCGTGCTCAAGCGGCAGAG
ATCGAGCTGCATCGGGCAGATGTTCTCCGTCTGAAACGCTGGAGTCGCGC
GTTTGCGAGCTCGATGTCCAGCGTCAGATCAACGTCACCCAGGGGAATGA
GGTTCGTGCTCAAGCGGCAGAGATCGAGCTGCATCGGGCAGATGTTCTCC
GTCTGAAACGGATGCTCTACTGCCGACAAGGCGAGATATCGTCAGAAAAA
AATACCTCCGCGAACTTACGACGGGAATTGTTGCGCGTCCGGAGAGAGTT
TATCTCGAACACTTCCAACCGAAGCGAACAACAGAGCGCTTTCGAGAGGG
TTGCAGTGAACGATGGAAATCGCGTTGCGGCACCAGCGATCGATCGCTCT
AAACAGGGATGCTCTACTGCCGACAAGGCGAGATATCGTCAGAAAAAAAT
ACCTCCGCGAACTTACGACGGGAATTGTTGCGCGTCCGGAGAGAGTTTAT
CTCGAACACTTCCAACCGAAGCGAACAACAGAGCGCTTTCGAGAGGGTTG
CAGTGAACGATGGAAATCGCGTTGCGGCACCAGCGATCGATCGCTCTAAA
CAGGGTAGGGGATGTCGGGTTAAGGCGCGTAGGAATGCTTCGGCCAATAG
CGCTGCTTCGACTTTATTTGTGCCGGGATCATTGCACCTTGGAATGGGTC
TGGGTCTGAAGAAAGCACCGGCCTGGAATCCTCCTGCGGGATCCGCCAAA
GTTATATTAGAGTCTATTATGGAGAAGCATCGATGAGTAGGGGATGTCGG
GTTAAGGCGCGTAGGAATGCTTCGGCCAATAGCGCTGCTTCGACTTTATT
TGTGCCGGGATCATTGCACCTTGGAATGGGTCTGGGTCTGAAGAAAGCAC
CGGCCTGGAATCCTCCTGCGGGATCCGCCAAAGTTATATTAGAGTCTATT
ATGGAGAAGCATCGATGA
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