mRNA_F-distichus_contig103084.272.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103084.272.1
Unique NamemRNA_F-distichus_contig103084.272.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.150e-8
Identity = 45/141 (31.91%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:   43 YMTALNCTVASVPAREYVFVLTDANATTGKRGEGGGEAD-----------------------------SKVLQKVACPTRSKAPTAPRDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            + TA +  +  V +R+++ VL DANA TG+R +G  +A                              S   +K       ++    ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:  118 FWTAPDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTSTCFRKCGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 256
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-7
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 1 
Query:   49 TALNCTVASVPAREYVFVLTDANATTGKRGEGGGEADSKVL----------------------QKVACPTRSKAPTAP-----------RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            TAL+  +  + + +Y+ VL DANA TG+R +G    D+K++                      Q     T  + P              ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:  610 TALDAAIREIHSCDYLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 748
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5JM98_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM98_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.420e-5
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRRKR 384
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR R
Sbjct:  264 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRRAR 317
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5L3K6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3K6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.570e-5
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:   69 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 120
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.280e-5
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:  207 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 258
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.360e-5
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:  207 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 258
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5L2J6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.710e-5
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:  187 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 238
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.720e-5
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:  310 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 361
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5KG50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG50_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.760e-5
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:  328 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 379
[Close]
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Match: A0A6H5JT65_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT65_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.950e-5
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  217 RDKARLDYILTKQAGRRLIRCVNVRRPPLEAPESEHNLVYAKVRIPRRSAPNRR 378
            ++K RLD+IL +QA RR +R V+V+R  ++  +S+HNLV   VR+P R APNRR
Sbjct:   69 KEKYRLDFILMRQADRRFVRNVSVKR--VDFKDSDHNLVLTTVRLPPRVAPNRR 120
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103084.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JM04_9PHAE2.150e-831.91Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JD10_9PHAE1.120e-732.87Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JM98_9PHAE5.420e-551.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L3K6_9PHAE5.570e-551.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE6.280e-551.85Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K259_9PHAE6.360e-551.85Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L2J6_9PHAE6.710e-551.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KV75_9PHAE6.720e-551.85Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KG50_9PHAE6.760e-551.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT65_9PHAE6.950e-551.85Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103084contigF-distichus_contig103084:1322..1705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.483511-CDS-F-distichus_contig103084:1321..17051622928948.483511-CDS-F-distichus_contig103084:1321..1705Fucus distichus monoicousCDSF-distichus_contig103084 1322..1705 -
1690885078.5246947-CDS-F-distichus_contig103084:1321..17051690885078.5246947-CDS-F-distichus_contig103084:1321..1705Fucus distichus monoicousCDSF-distichus_contig103084 1322..1705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103084.272.1prot_F-distichus_contig103084.272.1Fucus distichus monoicouspolypeptideF-distichus_contig103084 1322..1705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103084.272.1

>prot_F-distichus_contig103084.272.1 ID=prot_F-distichus_contig103084.272.1|Name=mRNA_F-distichus_contig103084.272.1|organism=Fucus distichus monoicous|type=polypeptide|length=128bp
YAPTEQAPEGQEAKYMTALNCTVASVPAREYVFVLTDANATTGKRGEGGG
EADSKVLQKVACPTRSKAPTAPRDKARLDYILTKQAGRRLIRCVNVRRPP
LEAPESEHNLVYAKVRIPRRSAPNRRKR
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mRNA from alignment at F-distichus_contig103084:1322..1705-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103084.272.1 ID=mRNA_F-distichus_contig103084.272.1|Name=mRNA_F-distichus_contig103084.272.1|organism=Fucus distichus monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at F-distichus_contig103084:1322..1705- (Fucus distichus monoicous)
TACGCCCCGACCGAGCAAGCGCCGGAGGGGCAGGAGGCCAAATACATGAC
AGCCCTCAACTGCACCGTAGCATCAGTGCCCGCTCGGGAATACGTCTTCG
TTTTAACAGACGCGAACGCCACGACAGGGAAGAGAGGTGAGGGCGGAGGA
GAAGCAGACAGCAAGGTGTTGCAAAAAGTGGCGTGCCCTACACGTTCCAA
AGCGCCAACTGCACCAAGAGACAAAGCACGTTTGGATTATATCCTGACAA
AGCAGGCAGGCCGCCGACTCATCCGCTGCGTTAATGTCCGCCGGCCCCCC
TTAGAGGCACCAGAATCGGAACACAATCTCGTGTACGCGAAGGTCCGCAT
TCCACGCAGGTCCGCACCAAACCGAAGAAAGAGG
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Coding sequence (CDS) from alignment at F-distichus_contig103084:1322..1705-

>mRNA_F-distichus_contig103084.272.1 ID=mRNA_F-distichus_contig103084.272.1|Name=mRNA_F-distichus_contig103084.272.1|organism=Fucus distichus monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at F-distichus_contig103084:1322..1705- (Fucus distichus monoicous)
TACGCCCCGACCGAGCAAGCGCCGGAGGGGCAGGAGGCCAAATACATGAC
AGCCCTCAACTGCACCGTAGCATCAGTGCCCGCTCGGGAATACGTCTTCG
TTTTAACAGACGCGAACGCCACGACAGGGAAGAGAGGTGAGGGCGGAGGA
GAAGCAGACAGCAAGGTGTTGCAAAAAGTGGCGTGCCCTACACGTTCCAA
AGCGCCAACTGCACCAAGAGACAAAGCACGTTTGGATTATATCCTGACAA
AGCAGGCAGGCCGCCGACTCATCCGCTGCGTTAATGTCCGCCGGCCCCCC
TTAGAGGCACCAGAATCGGAACACAATCTCGTGTACGCGAAGGTCCGCAT
TCCACGCAGGTCCGCACCAAACCGAAGAAAGAGGTACGCCCCGACCGAGC
AAGCGCCGGAGGGGCAGGAGGCCAAATACATGACAGCCCTCAACTGCACC
GTAGCATCAGTGCCCGCTCGGGAATACGTCTTCGTTTTAACAGACGCGAA
CGCCACGACAGGGAAGAGAGGTGAGGGCGGAGGAGAAGCAGACAGCAAGG
TGTTGCAAAAAGTGGCGTGCCCTACACGTTCCAAAGCGCCAACTGCACCA
AGAGACAAAGCACGTTTGGATTATATCCTGACAAAGCAGGCAGGCCGCCG
ACTCATCCGCTGCGTTAATGTCCGCCGGCCCCCCTTAGAGGCACCAGAAT
CGGAACACAATCTCGTGTACGCGAAGGTCCGCATTCCACGCAGGTCCGCA
CCAAACCGAAGAAAGAGG
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