mRNA_F-distichus_contig103064.270.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103064.270.1
Unique NamemRNA_F-distichus_contig103064.270.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103064.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103064contigF-distichus_contig103064:1399..1920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103064.270.1prot_F-distichus_contig103064.270.1Fucus distichus monoicouspolypeptideF-distichus_contig103064 1434..1920 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.3476195-UTR-F-distichus_contig103064:1398..14331622928948.3476195-UTR-F-distichus_contig103064:1398..1433Fucus distichus monoicousUTRF-distichus_contig103064 1399..1433 -
1690885078.4689846-UTR-F-distichus_contig103064:1398..14331690885078.4689846-UTR-F-distichus_contig103064:1398..1433Fucus distichus monoicousUTRF-distichus_contig103064 1399..1433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.3606663-CDS-F-distichus_contig103064:1433..15231622928948.3606663-CDS-F-distichus_contig103064:1433..1523Fucus distichus monoicousCDSF-distichus_contig103064 1434..1523 -
1690885078.4840524-CDS-F-distichus_contig103064:1433..15231690885078.4840524-CDS-F-distichus_contig103064:1433..1523Fucus distichus monoicousCDSF-distichus_contig103064 1434..1523 -
1622928948.37411-CDS-F-distichus_contig103064:1803..19201622928948.37411-CDS-F-distichus_contig103064:1803..1920Fucus distichus monoicousCDSF-distichus_contig103064 1804..1920 -
1690885078.496091-CDS-F-distichus_contig103064:1803..19201690885078.496091-CDS-F-distichus_contig103064:1803..1920Fucus distichus monoicousCDSF-distichus_contig103064 1804..1920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103064.270.1

>prot_F-distichus_contig103064.270.1 ID=prot_F-distichus_contig103064.270.1|Name=mRNA_F-distichus_contig103064.270.1|organism=Fucus distichus monoicous|type=polypeptide|length=69bp
GLQASLSAQSTPLEDSFDRSTNQSGCSKTSQACCGRPSQLTQHEPLRKSA
ITQAKQRPRPQQPLRVHG*
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mRNA from alignment at F-distichus_contig103064:1399..1920-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103064.270.1 ID=mRNA_F-distichus_contig103064.270.1|Name=mRNA_F-distichus_contig103064.270.1|organism=Fucus distichus monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at F-distichus_contig103064:1399..1920- (Fucus distichus monoicous)
GGGCTTCAGGCTTCTCTATCGGCACAGTCGACGCCGCTTGAGGACTCCTT
CGACCGGTCCACCAATCAAAGTGGCTGCTCTAAAACGTCTCAAGCTTGCT
GCGGTCGCCCCAGTCAGGTAGAACCTAAACCTTGTCCGCCCTCTTTCGCT
TTTTTTTCCTCTGTCGGTTTTCGGATGCCTTGTTTCGCTCTTCTCTCACC
CACACGGCCAAAAACCTACATCCACTGCCCCCTTCCCATACTGTGCTGTA
CCAAACCCCGACCCCAGTGCCGAGTGTGTGCACAGTGGTGGTGTTCCAGT
CCCCCCCCGTCATACCAAATAGCCGACGCTCCTCTGCCACGCAGTCCGTC
CATTGTTTCTCCTTCCCCGTCGGCCCACGTTTTCTCGCGTCTTCCAGCTC
ACCCAACATGAGCCTCTTCGGAAATCTGCCATCACCCAAGCGAAGCAGCG
CCCCCGACCTCAACAACCTCTTCGTGTGCACGGTTGAGCAAGCTGTGATG
TGTACAATCATTTGTTTCTAAA
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Coding sequence (CDS) from alignment at F-distichus_contig103064:1399..1920-

>mRNA_F-distichus_contig103064.270.1 ID=mRNA_F-distichus_contig103064.270.1|Name=mRNA_F-distichus_contig103064.270.1|organism=Fucus distichus monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at F-distichus_contig103064:1399..1920- (Fucus distichus monoicous)
GGGCTTCAGGCTTCTCTATCGGCACAGTCGACGCCGCTTGAGGACTCCTT
CGACCGGTCCACCAATCAAAGTGGCTGCTCTAAAACGTCTCAAGCTTGCT
GCGGTCGCCCCAGTCAGGGGCTTCAGGCTTCTCTATCGGCACAGTCGACG
CCGCTTGAGGACTCCTTCGACCGGTCCACCAATCAAAGTGGCTGCTCTAA
AACGTCTCAAGCTTGCTGCGGTCGCCCCAGTCAGCTCACCCAACATGAGC
CTCTTCGGAAATCTGCCATCACCCAAGCGAAGCAGCGCCCCCGACCTCAA
CAACCTCTTCGTGTGCACGGTTGACTCACCCAACATGAGCCTCTTCGGAA
ATCTGCCATCACCCAAGCGAAGCAGCGCCCCCGACCTCAACAACCTCTTC
GTGTGCACGGTTGA
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