mRNA_F-distichus_contig103037.268.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103037.268.1
Unique NamemRNA_F-distichus_contig103037.268.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103037.268.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.120e-17
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 VKRLKILLSKLQKSNQSKDADIAALKTP-PPPKVFTVDLRVRYRGSVWCLLR 156
            VKRLK LLSKLQKS+ SKDAD+AALK P PPPK FTV LRVR+ GS WC ++
Sbjct:    2 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVK 53
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BLAST of mRNA_F-distichus_contig103037.268.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.550e-15
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    4 VKRLKILLSKLQKSNQSKDADIAALKTP-PPPKVFTVDLRVRYRGSVWCLLR 156
            VKRLK LLSKLQKS+ SKDAD+AALK P PPPK FTV LRVR+ GS WC ++
Sbjct: 1171 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVK 1222
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103037.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMD5_ECTSI3.120e-1773.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSR4_9PHAE6.550e-1573.08GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103037contigF-distichus_contig103037:352..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002800.1
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.2466352-CDS-F-distichus_contig103037:351..5071622928948.2466352-CDS-F-distichus_contig103037:351..507Fucus distichus monoicousCDSF-distichus_contig103037 352..507 +
1690885078.4384246-CDS-F-distichus_contig103037:351..5071690885078.4384246-CDS-F-distichus_contig103037:351..507Fucus distichus monoicousCDSF-distichus_contig103037 352..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103037.268.1prot_F-distichus_contig103037.268.1Fucus distichus monoicouspolypeptideF-distichus_contig103037 352..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103037.268.1

>prot_F-distichus_contig103037.268.1 ID=prot_F-distichus_contig103037.268.1|Name=mRNA_F-distichus_contig103037.268.1|organism=Fucus distichus monoicous|type=polypeptide|length=52bp
QVKRLKILLSKLQKSNQSKDADIAALKTPPPPKVFTVDLRVRYRGSVWCL
LR
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mRNA from alignment at F-distichus_contig103037:352..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103037.268.1 ID=mRNA_F-distichus_contig103037.268.1|Name=mRNA_F-distichus_contig103037.268.1|organism=Fucus distichus monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at F-distichus_contig103037:352..507+ (Fucus distichus monoicous)
CAGGTGAAGCGCCTCAAGATTCTTCTGTCCAAGCTCCAGAAATCCAACCA
GAGCAAGGACGCCGACATCGCCGCCCTTAAGACCCCCCCACCCCCGAAGG
TCTTCACCGTCGACCTCAGGGTGCGATACCGCGGCAGCGTCTGGTGTCTC
CTCAGG
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Coding sequence (CDS) from alignment at F-distichus_contig103037:352..507+

>mRNA_F-distichus_contig103037.268.1 ID=mRNA_F-distichus_contig103037.268.1|Name=mRNA_F-distichus_contig103037.268.1|organism=Fucus distichus monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at F-distichus_contig103037:352..507+ (Fucus distichus monoicous)
CAGGTGAAGCGCCTCAAGATTCTTCTGTCCAAGCTCCAGAAATCCAACCA
GAGCAAGGACGCCGACATCGCCGCCCTTAAGACCCCCCCACCCCCGAAGG
TCTTCACCGTCGACCTCAGGGTGCGATACCGCGGCAGCGTCTGGTGTCTC
CTCAGGCAGGTGAAGCGCCTCAAGATTCTTCTGTCCAAGCTCCAGAAATC
CAACCAGAGCAAGGACGCCGACATCGCCGCCCTTAAGACCCCCCCACCCC
CGAAGGTCTTCACCGTCGACCTCAGGGTGCGATACCGCGGCAGCGTCTGG
TGTCTCCTCAGG
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